Wall clock time and date at job start Tue Mar 31 2020 15:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48504 * 109.46842 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47450 * 300.00069 * 3 2 1 6 6 H 1.48498 * 109.46993 * 60.00508 * 3 2 1 7 7 C 1.38810 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00153 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.47873 * 126.94168 * 359.97438 * 9 7 2 11 11 C 1.56020 * 105.10040 * 182.02033 * 10 9 7 12 12 H 1.09003 * 116.24719 * 159.68356 * 11 10 9 13 13 C 1.57081 * 99.60887 * 32.80202 * 11 10 9 14 14 C 1.49284 * 126.94534 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.15582 * 16.68697 * 14 9 7 16 16 C 1.55999 * 104.30239 * 246.60380 * 14 9 7 17 17 N 1.47865 * 105.11469 * 289.08897 * 16 14 9 18 18 C 1.34777 * 126.94462 * 181.91012 * 17 16 14 19 19 O 1.21653 * 119.99992 * 179.68013 * 18 17 16 20 20 C 1.47008 * 120.00226 * 359.95282 * 18 17 16 21 21 C 1.33681 * 124.66256 * 179.72746 * 20 18 17 22 22 C 1.40416 * 115.57358 * 179.97438 * 21 20 18 23 23 C 1.41571 * 128.85282 * 180.02562 * 22 21 20 24 24 C 1.35918 * 120.49455 * 179.97438 * 23 22 21 25 25 C 1.38963 * 120.69885 * 0.02562 * 24 23 22 26 26 C 1.37400 * 120.18632 * 359.97438 * 25 24 23 27 27 C 1.39899 * 120.17605 * 0.02562 * 26 25 24 28 28 S 1.75488 * 124.65552 * 359.42562 * 20 18 17 29 29 H 0.97008 * 119.99768 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.31612 * 63.11634 * 10 9 7 31 31 H 1.08994 * 110.40110 * 300.96945 * 10 9 7 32 32 H 1.09008 * 112.36456 * 64.27566 * 13 11 10 33 33 H 1.09000 * 112.36749 * 191.71298 * 13 11 10 34 34 H 1.09003 * 110.40787 * 170.12189 * 16 14 9 35 35 H 1.09002 * 110.21353 * 47.94572 * 16 14 9 36 36 H 1.08001 * 122.20826 * 359.94352 * 21 20 18 37 37 H 1.08002 * 119.75127 * 0.02562 * 23 22 21 38 38 H 1.07997 * 119.64933 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.91398 * 180.02562 * 25 24 23 40 40 H 1.07997 * 119.91010 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1424 -2.5668 0.0005 11 6 -0.3639 -4.1103 0.0531 12 1 -1.3411 -4.4455 0.4009 13 6 0.8845 -4.5253 0.9113 14 6 1.9101 -3.7617 -0.0016 15 1 2.9607 -3.8370 0.2785 16 6 1.5076 -4.3508 -1.3889 17 7 0.0499 -4.5831 -1.3010 18 6 -0.7436 -5.1189 -2.2494 19 8 -1.9338 -5.2582 -2.0393 20 6 -0.1701 -5.5405 -3.5356 21 6 -0.8679 -6.0861 -4.5369 22 6 -0.1264 -6.4172 -5.6825 23 6 -0.5741 -7.0005 -6.8922 24 6 0.3001 -7.2502 -7.9026 25 6 1.6477 -6.9388 -7.7678 26 6 2.1130 -6.3719 -6.6059 27 6 1.2326 -6.1054 -5.5518 28 16 1.5234 -5.3900 -3.9704 29 1 -0.4850 0.8401 0.0004 30 1 -0.5747 -2.1533 -0.9107 31 1 -0.5824 -2.0913 0.8770 32 1 0.8464 -4.1193 1.9223 33 1 1.0496 -5.6027 0.9094 34 1 2.0304 -5.2901 -1.5692 35 1 1.7296 -3.6352 -2.1806 36 1 -1.9315 -6.2610 -4.4690 37 1 -1.6183 -7.2483 -7.0135 38 1 -0.0563 -7.6952 -8.8197 39 1 2.3312 -7.1423 -8.5788 40 1 3.1611 -6.1313 -6.5061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032503921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:50 Heat of formation + Delta-G solvation = 75.545815 kcal Electronic energy + Delta-G solvation = -25090.078782 eV Core-core repulsion = 21577.014178 eV Total energy + Delta-G solvation = -3513.064604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22308 -39.71835 -37.95563 -35.14682 -33.72647 -31.73311 -31.18708 -29.81188 -28.87917 -28.58285 -25.35798 -24.76520 -23.53902 -23.11374 -21.53033 -20.00999 -19.88080 -18.86539 -18.13572 -17.10591 -16.53166 -16.02464 -15.74989 -15.39857 -15.00454 -14.78450 -14.30094 -13.94596 -13.80019 -13.75009 -13.44747 -13.19687 -13.08154 -12.25989 -12.00788 -11.92831 -11.75131 -11.41858 -11.39181 -11.27415 -11.08361 -11.00045 -10.91401 -10.68075 -10.52773 -10.22027 -10.09484 -9.84085 -9.77162 -9.67714 -8.75926 -8.63349 -8.18654 -7.74340 -6.98435 -5.80989 -3.16007 0.29265 1.09967 1.43997 1.89762 1.95215 3.18547 3.34520 3.35245 3.40182 3.43437 3.62792 4.37972 4.46949 4.63276 4.72698 4.88850 5.05854 5.09359 5.11065 5.18908 5.28452 5.50009 5.50628 5.55298 5.65917 5.70060 5.77690 5.80270 5.82387 6.05760 6.14094 6.21085 6.24714 6.29520 6.32577 6.40958 6.51307 6.60081 6.67415 7.37232 7.42617 7.67718 7.90700 8.04861 8.38705 9.05473 9.66467 10.34384 11.31132 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.003567 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.405446 B = 7848.493544 C = 8573.691412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.173 3.827 11 C 0.100 3.900 12 H 0.117 0.883 13 C -0.151 4.151 14 C 0.147 3.853 15 H 0.111 0.889 16 C 0.069 3.931 17 N -0.598 5.598 18 C 0.596 3.404 19 O -0.541 6.541 20 C -0.204 4.204 21 C -0.057 4.057 22 C -0.083 4.083 23 C -0.071 4.071 24 C -0.126 4.126 25 C -0.100 4.100 26 C -0.085 4.085 27 C -0.154 4.154 28 S 0.154 5.846 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -15.452 -10.847 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.002 4.002 12 H 0.135 0.865 13 C -0.191 4.191 14 C 0.038 3.962 15 H 0.128 0.872 16 C -0.058 4.058 17 N -0.331 5.331 18 C 0.384 3.616 19 O -0.421 6.421 20 C -0.323 4.323 21 C -0.090 4.090 22 C -0.091 4.091 23 C -0.091 4.091 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.269 4.269 28 S 0.423 5.577 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.310 -14.641 -9.952 18.220 hybrid contribution -0.830 0.454 -0.974 1.358 sum 3.480 -14.187 -10.926 18.242 Atomic orbital electron populations 1.69924 1.04976 1.25301 1.56225 1.24832 0.95695 0.97787 1.01847 0.86034 0.78700 0.83637 0.77273 1.20402 1.21750 1.21695 1.19094 0.90465 0.81950 1.44614 0.89981 1.45267 1.01334 0.99283 1.86069 1.21960 0.84748 0.86959 1.01570 1.24430 0.98060 0.97838 0.79875 0.86481 1.24187 0.96461 0.99081 0.99329 1.23127 0.96817 0.86284 0.89984 0.87170 1.23494 0.79884 0.99547 1.02865 1.49064 1.09335 1.59142 1.15519 1.16633 0.85469 0.77862 0.81670 1.90786 1.14366 1.57280 1.79705 1.23802 0.98049 1.10422 1.00044 1.20169 1.01461 0.96889 0.90453 1.18228 0.92117 1.03186 0.95618 1.20828 0.99962 0.96924 0.91373 1.20659 0.93545 1.01410 0.99059 1.21085 0.95865 0.98222 0.97023 1.20492 0.98708 0.99679 0.91879 1.23547 0.97313 1.05134 1.00955 1.84748 1.05211 1.62096 1.05653 0.93563 0.93352 0.92262 0.89393 0.91461 0.92017 0.90157 0.82994 0.85487 0.85571 0.85331 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.56 55.49 0.59 -25.93 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.11 10.38 -15.06 -0.16 -6.26 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.09 3.03 -156.34 -0.47 -14.57 16 10 C 0.17 4.10 4.77 -1.67 -0.01 4.10 16 11 C 0.10 1.93 5.24 -62.56 -0.33 1.60 16 12 H 0.12 2.17 8.05 -51.93 -0.42 1.76 16 13 C -0.15 -2.50 6.81 -22.29 -0.15 -2.65 16 14 C 0.15 2.68 5.52 -62.55 -0.35 2.33 16 15 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.07 1.19 4.54 -1.69 -0.01 1.19 16 17 N -0.60 -11.36 2.95 -158.20 -0.47 -11.83 16 18 C 0.60 11.62 7.87 -12.71 -0.10 11.52 16 19 O -0.54 -11.85 17.06 5.23 0.09 -11.77 16 20 C -0.20 -3.40 6.27 -37.63 -0.24 -3.64 16 21 C -0.06 -0.85 9.79 -40.36 -0.40 -1.25 16 22 C -0.08 -1.11 5.87 -107.13 -0.63 -1.74 16 23 C -0.07 -0.75 10.03 -39.14 -0.39 -1.14 16 24 C -0.13 -1.13 9.94 -40.14 -0.40 -1.53 16 25 C -0.10 -0.90 10.03 -39.62 -0.40 -1.29 16 26 C -0.09 -0.91 10.07 -39.26 -0.40 -1.31 16 27 C -0.15 -2.03 6.50 -38.28 -0.25 -2.28 16 28 S 0.15 2.20 18.71 -107.50 -2.01 0.18 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 31 H 0.06 1.54 7.46 -51.93 -0.39 1.15 16 32 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 35 H 0.08 1.53 7.14 -51.93 -0.37 1.16 16 36 H 0.15 2.14 7.96 -52.49 -0.42 1.72 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -31.83 340.27 -11.31 -43.14 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.86 Total: 1.71 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.29 Total: -2.56 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.35 Total: -52.32 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.01 Total: 0.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.83 -11.31 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032503921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.684 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds