Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46992 * 2 1 4 4 S 1.81404 * 109.47200 * 239.99960 * 2 1 3 5 5 C 1.76197 * 102.99930 * 65.00087 * 4 2 1 6 6 C 1.39199 * 119.71295 * 180.02562 * 5 4 2 7 7 C 1.38261 * 119.09749 * 180.02562 * 6 5 4 8 8 C 1.38907 * 118.51309 * 359.97438 * 7 6 5 9 9 C 1.38030 * 119.34132 * 0.26437 * 8 7 6 10 10 N 1.31970 * 120.85935 * 359.44186 * 9 8 7 11 11 C 1.50690 * 109.47146 * 119.99900 * 2 1 3 12 12 O 1.21280 * 120.00194 * 100.00159 * 11 2 1 13 13 N 1.34780 * 120.00048 * 280.00490 * 11 2 1 14 14 C 1.39239 * 120.00246 * 176.69786 * 13 11 2 15 15 C 1.39476 * 119.83616 * 217.48352 * 14 13 11 16 16 C 1.36374 * 120.17177 * 179.75905 * 15 14 13 17 17 C 1.40871 * 119.82381 * 0.51603 * 16 15 14 18 18 C 1.41160 * 120.16103 * 179.71682 * 17 16 15 19 19 H 1.07995 * 119.99469 * 157.97572 * 18 17 16 20 20 C 1.39906 * 120.00021 * 337.97995 * 18 17 16 21 21 N 1.30876 * 119.99962 * 327.60340 * 20 18 17 22 22 Si 1.86799 * 119.99929 * 147.60490 * 20 18 17 23 23 H 1.48505 * 109.46944 * 94.98507 * 22 20 18 24 24 H 1.48507 * 109.46827 * 214.98223 * 22 20 18 25 25 H 1.48496 * 109.46994 * 334.98515 * 22 20 18 26 26 C 1.40867 * 119.67409 * 359.73662 * 17 16 15 27 27 C 1.36368 * 119.83026 * 0.02562 * 26 17 16 28 28 H 1.08992 * 109.47353 * 299.99976 * 1 2 3 29 29 H 1.08999 * 109.47034 * 60.00327 * 1 2 3 30 30 H 1.09004 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.45070 * 359.96973 * 6 5 4 32 32 H 1.08010 * 120.74662 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.33177 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.57271 * 179.72589 * 9 8 7 35 35 H 0.96998 * 119.99878 * 356.69133 * 13 11 2 36 36 H 1.08007 * 119.91374 * 0.02562 * 15 14 13 37 37 H 1.08001 * 120.08595 * 180.24814 * 16 15 14 38 38 H 0.96997 * 119.99860 * 180.02562 * 21 20 18 39 39 H 1.08004 * 120.08319 * 179.97438 * 26 17 16 40 40 H 1.07995 * 119.92072 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5828 0.1846 -2.7922 6 6 1.8673 -0.1582 -4.1110 7 6 1.4285 0.6672 -5.1298 8 6 0.7166 1.8122 -4.7955 9 6 0.4743 2.0939 -3.4662 10 7 0.9002 1.2852 -2.5143 11 6 2.0323 -0.7103 1.2304 12 8 2.4065 -1.8616 1.1557 13 7 2.0658 -0.0663 2.4139 14 6 2.4647 -0.7428 3.5637 15 6 1.8340 -0.4774 4.7790 16 6 2.2159 -1.1395 5.9084 17 6 3.2576 -2.0859 5.8473 18 6 3.6627 -2.7711 7.0131 19 1 4.1810 -3.7150 6.9320 20 6 3.3926 -2.2273 8.2736 21 7 3.3742 -0.9288 8.4358 22 14 3.0582 -3.3547 9.7250 23 1 4.3172 -3.5746 10.4812 24 1 2.0485 -2.7284 10.6158 25 1 2.5432 -4.6572 9.2316 26 6 3.8934 -2.3447 4.6172 27 6 3.4972 -1.6782 3.4954 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.4239 -1.0561 -4.3353 32 1 1.6340 0.4266 -6.1625 33 1 0.3603 2.4778 -5.5679 34 1 -0.0750 2.9855 -3.2019 35 1 1.8121 0.8685 2.4647 36 1 1.0382 0.2514 4.8250 37 1 1.7239 -0.9358 6.8480 38 1 3.1873 -0.5518 9.3097 39 1 4.6931 -3.0686 4.5629 40 1 3.9839 -1.8752 2.5517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023190332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = 21.775298 kcal Electronic energy + Delta-G solvation = -23569.563795 eV Core-core repulsion = 20054.167526 eV Total energy + Delta-G solvation = -3515.396269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16444 -39.72632 -37.30605 -34.49956 -33.62260 -32.94371 -32.35505 -31.49468 -29.57952 -28.95147 -25.50186 -24.16980 -23.97750 -23.74438 -21.65357 -20.78708 -19.76716 -18.45747 -17.41945 -16.90541 -16.62182 -16.52647 -16.14960 -15.31586 -15.10283 -14.94940 -14.48226 -14.12351 -14.06627 -13.86000 -13.40582 -13.21486 -12.77700 -12.70959 -12.37074 -12.09898 -12.05636 -11.92153 -11.76619 -11.41418 -11.16083 -10.96281 -10.55618 -10.35874 -10.30287 -10.17921 -9.99995 -9.80989 -9.76248 -9.47499 -9.09894 -8.72498 -7.68308 -7.56718 -7.17671 -6.90950 -4.29240 0.70720 0.94260 1.21883 2.05839 2.55272 2.92865 3.04188 3.08365 3.10855 3.29061 3.41283 3.68778 3.87907 4.24358 4.47754 4.51450 4.77775 4.80385 4.85576 4.89631 4.95068 5.11253 5.37624 5.57874 5.65435 5.65668 5.74899 5.85066 6.07133 6.17193 6.29578 6.40865 6.73685 6.92062 6.98148 7.11599 7.26248 7.46872 7.54255 7.64781 7.85136 8.00144 8.21923 8.24404 8.52414 8.68518 8.82087 8.96927 9.99917 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.002120 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.935890 B =13205.915792 C =13578.716144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.115 0.885 4 S 0.004 5.996 5 C 0.110 3.890 6 C -0.153 4.153 7 C -0.058 4.058 8 C -0.187 4.187 9 C 0.113 3.887 10 N -0.491 5.491 11 C 0.516 3.484 12 O -0.519 6.519 13 N -0.638 5.638 14 C -0.025 4.025 15 C -0.099 4.099 16 C -0.172 4.172 17 C 0.113 3.887 18 C -0.464 4.464 19 H 0.083 0.917 20 C 0.088 3.912 21 N -0.768 5.768 22 Si 0.896 3.104 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.224 4.224 27 C -0.064 4.064 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 7.625 -20.349 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.230 4.230 3 H 0.133 0.867 4 S 0.246 5.754 5 C -0.139 4.139 6 C -0.180 4.180 7 C -0.085 4.085 8 C -0.211 4.211 9 C -0.047 4.047 10 N -0.204 5.204 11 C 0.300 3.700 12 O -0.396 6.396 13 N -0.281 5.281 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.192 4.192 17 C 0.111 3.889 18 C -0.491 4.491 19 H 0.101 0.899 20 C -0.134 4.134 21 N -0.391 5.391 22 Si 0.720 3.280 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.244 4.244 27 C -0.083 4.083 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.603 6.129 -19.270 20.983 hybrid contribution -0.862 1.281 -0.095 1.547 sum -6.465 7.410 -19.365 21.718 Atomic orbital electron populations 1.21966 0.90296 1.03575 1.03941 1.23437 1.01714 1.03633 0.94237 0.86734 1.86251 1.67231 1.28191 0.93687 1.23586 0.97177 0.96038 0.97059 1.21639 1.02931 1.01841 0.91559 1.21492 0.94267 0.93253 0.99527 1.22051 1.02015 0.99019 0.97971 1.22756 0.95511 0.97387 0.89013 1.68146 1.11525 1.03778 1.36969 1.19619 0.79601 0.86847 0.83928 1.90727 1.47146 1.16923 1.84754 1.42787 1.65558 1.13292 1.06488 1.17027 1.03699 1.06146 0.84792 1.20160 0.98747 1.00554 0.92476 1.20619 1.00282 1.01803 0.96448 1.17608 0.89356 0.89802 0.92172 1.19524 1.33375 1.06364 0.89864 0.89943 1.25956 0.91767 0.94887 1.00815 1.69946 1.30711 1.12645 1.25791 0.86500 0.79240 0.82035 0.80262 1.19434 1.19870 1.18055 1.20596 1.04025 1.06384 0.93371 1.20301 0.94504 0.96043 0.97500 0.91288 0.89798 0.91421 0.84299 0.84465 0.84772 0.82564 0.77086 0.89233 0.87438 0.90562 0.88666 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.01 37.16 0.33 -1.36 16 2 C -0.10 -1.35 2.68 -27.89 -0.07 -1.42 16 3 H 0.11 1.42 8.13 -51.92 -0.42 1.00 16 4 S 0.00 0.05 20.58 -107.50 -2.21 -2.16 16 5 C 0.11 1.29 6.85 -16.92 -0.12 1.17 16 6 C -0.15 -1.45 9.84 -39.22 -0.39 -1.84 16 7 C -0.06 -0.42 10.16 -39.33 -0.40 -0.82 16 8 C -0.19 -1.29 10.10 -39.41 -0.40 -1.68 16 9 C 0.11 0.95 11.17 -17.57 -0.20 0.75 16 10 N -0.49 -5.47 7.45 -12.10 -0.09 -5.56 16 11 C 0.52 9.23 6.81 -10.99 -0.07 9.16 16 12 O -0.52 -11.32 13.66 5.56 0.08 -11.25 16 13 N -0.64 -11.46 5.30 -9.74 -0.05 -11.51 16 14 C -0.02 -0.55 6.25 -83.57 -0.52 -1.08 16 15 C -0.10 -2.27 9.90 -39.79 -0.39 -2.66 16 16 C -0.17 -4.39 8.74 -39.26 -0.34 -4.73 16 17 C 0.11 3.04 5.57 -106.80 -0.60 2.44 16 18 C -0.46 -12.25 8.94 -37.85 -0.34 -12.59 16 19 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 20 C 0.09 2.16 4.77 -17.33 -0.08 2.08 16 21 N -0.77 -19.32 11.78 55.55 0.65 -18.66 16 22 Si 0.90 18.17 29.66 -169.99 -5.04 13.13 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.22 -5.74 9.74 -39.26 -0.38 -6.13 16 27 C -0.06 -1.55 8.59 -39.79 -0.34 -1.89 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.97 5.96 -51.93 -0.31 0.66 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 34 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.40 5.66 8.82 -40.82 -0.36 5.30 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.11 2.78 6.52 -52.49 -0.34 2.43 16 38 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 39 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 40 H 0.10 2.47 6.45 -52.49 -0.34 2.13 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -30.90 355.73 -10.33 -41.22 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.71 Total: 10.02 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -4.31 Total: -20.59 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.51 Total: -35.73 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.13 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.21 Total: -2.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.90 -10.33 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023190332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.000 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds