Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46992 * 2 1 4 4 S 1.81404 * 109.47200 * 239.99960 * 2 1 3 5 5 C 1.76197 * 102.99930 * 65.00087 * 4 2 1 6 6 C 1.39199 * 119.71295 * 180.02562 * 5 4 2 7 7 C 1.38261 * 119.09749 * 180.02562 * 6 5 4 8 8 C 1.38907 * 118.51309 * 359.97438 * 7 6 5 9 9 C 1.38030 * 119.34132 * 0.26437 * 8 7 6 10 10 N 1.31970 * 120.85935 * 359.44186 * 9 8 7 11 11 C 1.50690 * 109.47146 * 119.99900 * 2 1 3 12 12 O 1.21280 * 120.00194 * 100.00159 * 11 2 1 13 13 N 1.34780 * 120.00048 * 280.00490 * 11 2 1 14 14 C 1.39239 * 120.00246 * 176.69786 * 13 11 2 15 15 C 1.39476 * 119.83616 * 217.48352 * 14 13 11 16 16 C 1.36374 * 120.17177 * 179.75905 * 15 14 13 17 17 C 1.40871 * 119.82381 * 0.51603 * 16 15 14 18 18 C 1.41160 * 120.16103 * 179.71682 * 17 16 15 19 19 H 1.07995 * 119.99469 * 157.97572 * 18 17 16 20 20 C 1.39906 * 120.00021 * 337.97995 * 18 17 16 21 21 N 1.30876 * 119.99962 * 327.60340 * 20 18 17 22 22 Si 1.86799 * 119.99929 * 147.60490 * 20 18 17 23 23 H 1.48505 * 109.46944 * 94.98507 * 22 20 18 24 24 H 1.48507 * 109.46827 * 214.98223 * 22 20 18 25 25 H 1.48496 * 109.46994 * 334.98515 * 22 20 18 26 26 C 1.40867 * 119.67409 * 359.73662 * 17 16 15 27 27 C 1.36368 * 119.83026 * 0.02562 * 26 17 16 28 28 H 1.08992 * 109.47353 * 299.99976 * 1 2 3 29 29 H 1.08999 * 109.47034 * 60.00327 * 1 2 3 30 30 H 1.09004 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.45070 * 359.96973 * 6 5 4 32 32 H 1.08010 * 120.74662 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.33177 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.57271 * 179.72589 * 9 8 7 35 35 H 0.96998 * 119.99878 * 356.69133 * 13 11 2 36 36 H 1.08007 * 119.91374 * 0.02562 * 15 14 13 37 37 H 1.08001 * 120.08595 * 180.24814 * 16 15 14 38 38 H 0.96997 * 119.99860 * 180.02562 * 21 20 18 39 39 H 1.08004 * 120.08319 * 179.97438 * 26 17 16 40 40 H 1.07995 * 119.92072 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5828 0.1846 -2.7922 6 6 1.8673 -0.1582 -4.1110 7 6 1.4285 0.6672 -5.1298 8 6 0.7166 1.8122 -4.7955 9 6 0.4743 2.0939 -3.4662 10 7 0.9002 1.2852 -2.5143 11 6 2.0323 -0.7103 1.2304 12 8 2.4065 -1.8616 1.1557 13 7 2.0658 -0.0663 2.4139 14 6 2.4647 -0.7428 3.5637 15 6 1.8340 -0.4774 4.7790 16 6 2.2159 -1.1395 5.9084 17 6 3.2576 -2.0859 5.8473 18 6 3.6627 -2.7711 7.0131 19 1 4.1810 -3.7150 6.9320 20 6 3.3926 -2.2273 8.2736 21 7 3.3742 -0.9288 8.4358 22 14 3.0582 -3.3547 9.7250 23 1 4.3172 -3.5746 10.4812 24 1 2.0485 -2.7284 10.6158 25 1 2.5432 -4.6572 9.2316 26 6 3.8934 -2.3447 4.6172 27 6 3.4972 -1.6782 3.4954 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.4239 -1.0561 -4.3353 32 1 1.6340 0.4266 -6.1625 33 1 0.3603 2.4778 -5.5679 34 1 -0.0750 2.9855 -3.2019 35 1 1.8121 0.8685 2.4647 36 1 1.0382 0.2514 4.8250 37 1 1.7239 -0.9358 6.8480 38 1 3.1873 -0.5518 9.3097 39 1 4.6931 -3.0686 4.5629 40 1 3.9839 -1.8752 2.5517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023190332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = 4.798810 kcal Electronic energy + Delta-G solvation = -23570.299951 eV Core-core repulsion = 20054.167526 eV Total energy + Delta-G solvation = -3516.132424 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30838 -40.82664 -39.13230 -36.25302 -35.06677 -34.23740 -33.23772 -32.15118 -31.49016 -30.79400 -27.15640 -25.50077 -24.67330 -24.45073 -23.43352 -22.58855 -21.32025 -19.47284 -19.26445 -18.32614 -17.93809 -17.26824 -17.12275 -16.92137 -16.39455 -16.05047 -15.80832 -15.50480 -15.23971 -14.96795 -14.82077 -14.47616 -14.12514 -13.98970 -13.82727 -13.76512 -13.42857 -13.22157 -12.99618 -12.85907 -12.69431 -12.53880 -12.33291 -11.92952 -11.61738 -11.31121 -11.18269 -10.98824 -10.83459 -10.71230 -10.54239 -10.47729 -9.50744 -9.05461 -8.75870 -8.63920 -6.25785 0.04241 0.21892 0.32747 0.79015 1.10810 1.12426 1.36088 1.41117 1.53502 1.68330 2.19047 2.25058 2.61992 2.76542 3.55836 3.63729 3.69745 3.80298 3.99030 4.01477 4.16875 4.22413 4.36774 4.43630 4.45877 4.62259 4.73730 4.80180 4.87454 5.07911 5.09540 5.11841 5.13349 5.24558 5.27332 5.39843 5.61510 5.71840 5.82935 5.98455 6.05363 6.32425 6.56674 6.62241 6.78884 6.86753 6.95115 7.27058 8.18470 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.002120 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.935890 B =13205.915792 C =13578.716144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 H 0.132 0.868 4 S -0.052 6.052 5 C 0.092 3.908 6 C -0.162 4.162 7 C -0.056 4.056 8 C -0.173 4.173 9 C 0.100 3.900 10 N -0.510 5.510 11 C 0.517 3.483 12 O -0.560 6.560 13 N -0.631 5.631 14 C -0.011 4.011 15 C -0.096 4.096 16 C -0.190 4.190 17 C 0.085 3.915 18 C -0.503 4.503 19 H 0.075 0.925 20 C 0.052 3.948 21 N -0.796 5.796 22 Si 0.972 3.028 23 H -0.259 1.259 24 H -0.260 1.260 25 H -0.262 1.262 26 C -0.246 4.246 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.144 0.856 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.417 0.583 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.295 0.705 39 H 0.092 0.908 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 9.716 -21.982 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.211 4.211 3 H 0.150 0.850 4 S 0.190 5.810 5 C -0.155 4.155 6 C -0.189 4.189 7 C -0.084 4.084 8 C -0.195 4.195 9 C -0.060 4.060 10 N -0.223 5.223 11 C 0.303 3.697 12 O -0.439 6.439 13 N -0.276 5.276 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.210 4.210 17 C 0.082 3.918 18 C -0.530 4.530 19 H 0.093 0.907 20 C -0.168 4.168 21 N -0.419 5.419 22 Si 0.792 3.208 23 H -0.184 1.184 24 H -0.184 1.184 25 H -0.186 1.186 26 C -0.266 4.266 27 C -0.095 4.095 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.254 0.746 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.379 8.271 -20.931 23.684 hybrid contribution -0.343 0.776 0.136 0.859 sum -7.722 9.046 -20.795 23.956 Atomic orbital electron populations 1.21936 0.88864 1.03020 1.05171 1.23238 1.02497 1.03443 0.91896 0.85019 1.86355 1.68836 1.30460 0.95379 1.23277 0.99201 0.96656 0.96399 1.21854 1.03116 1.02619 0.91272 1.21925 0.93268 0.92699 1.00467 1.22501 1.00031 0.98782 0.98209 1.23310 0.95495 0.97752 0.89448 1.68029 1.11941 1.03970 1.38405 1.20299 0.78202 0.86460 0.84747 1.90714 1.48619 1.19033 1.85497 1.42678 1.65388 1.14210 1.05340 1.17072 1.02179 1.04934 0.86268 1.20437 0.99066 1.00450 0.91603 1.20657 1.00509 1.02615 0.97170 1.17922 0.90312 0.90854 0.92705 1.19721 1.35430 1.06660 0.91200 0.90674 1.26743 0.90777 0.96317 1.02983 1.69937 1.30642 1.14091 1.27257 0.85360 0.79545 0.79350 0.76523 1.18379 1.18360 1.18595 1.20713 1.04619 1.07272 0.93960 1.20397 0.95402 0.96803 0.96869 0.89774 0.88733 0.92857 0.83852 0.81233 0.81246 0.79981 0.74600 0.85672 0.88157 0.89377 0.89006 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.01 71.98 0.65 -2.38 16 2 C -0.08 -2.11 2.68 29.85 0.08 -2.03 16 3 H 0.13 3.06 8.13 -2.39 -0.02 3.04 16 4 S -0.05 -1.46 20.58 -56.49 -1.16 -2.62 16 5 C 0.09 2.08 6.85 84.83 0.58 2.66 16 6 C -0.16 -2.83 9.84 22.51 0.22 -2.61 16 7 C -0.06 -0.63 10.16 22.44 0.23 -0.40 16 8 C -0.17 -1.66 10.10 22.38 0.23 -1.43 16 9 C 0.10 1.35 11.17 84.62 0.95 2.30 16 10 N -0.51 -10.37 7.45 -192.21 -1.43 -11.80 16 11 C 0.52 18.42 6.81 87.65 0.60 19.02 16 12 O -0.56 -25.06 13.66 -3.03 -0.04 -25.11 16 13 N -0.63 -22.02 5.30 -303.11 -1.61 -23.63 16 14 C -0.01 -0.51 6.25 38.57 0.24 -0.27 16 15 C -0.10 -4.32 9.90 22.13 0.22 -4.10 16 16 C -0.19 -9.88 8.74 22.48 0.20 -9.68 16 17 C 0.08 4.73 5.57 -21.27 -0.12 4.61 16 18 C -0.50 -27.64 8.94 23.39 0.21 -27.43 16 19 H 0.08 4.07 8.02 -2.91 -0.02 4.04 16 20 C 0.05 2.58 4.77 85.24 0.41 2.99 16 21 N -0.80 -40.44 11.78 21.82 0.26 -40.19 16 22 Si 0.97 37.49 29.66 68.60 2.03 39.53 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 C -0.25 -13.25 9.74 22.48 0.22 -13.03 16 27 C -0.07 -3.76 8.59 22.13 0.19 -3.57 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 2.02 5.96 -2.39 -0.01 2.00 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.42 11.01 8.82 -92.71 -0.82 10.20 16 36 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.10 5.28 6.52 -2.91 -0.02 5.26 16 38 H 0.30 13.26 8.30 -92.71 -0.77 12.49 16 39 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.10 5.00 6.45 -2.91 -0.02 4.98 16 Total: -1.00 -70.41 355.73 3.40 -67.00 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.26 Total: 32.18 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 5.09 Total: -35.37 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.78 Total: -75.61 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.04 Total: -25.11 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -1.16 Total: -2.62 kcal Total: -70.41 3.40 -67.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023190332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.803 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds