Wall clock time and date at job start Tue Mar 31 2020 14:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 N 1.46506 * 109.46916 * 64.99869 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00226 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00275 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00062 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46718 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47209 * 119.99613 * 10 8 6 13 13 H 1.48499 * 109.47208 * 240.00196 * 10 8 6 14 14 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 15 15 N 1.46499 * 109.46840 * 294.99527 * 14 2 1 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 2 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47064 * 180.02562 * 18 16 15 20 20 C 1.38267 * 119.96369 * 269.72647 * 19 18 16 21 21 C 1.38201 * 120.04349 * 179.72851 * 20 19 18 22 22 C 1.38446 * 119.98755 * 0.52099 * 21 20 19 23 23 F 1.35101 * 120.03459 * 179.73015 * 22 21 20 24 24 C 1.38547 * 119.93771 * 359.75182 * 22 21 20 25 25 Cl 1.73609 * 120.02416 * 180.02562 * 24 22 21 26 26 C 1.38210 * 119.97121 * 90.00142 * 19 18 16 27 27 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 29 29 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 30 30 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 31 31 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 32 32 H 0.96999 * 119.99735 * 0.02562 * 5 4 2 33 33 H 0.96997 * 120.00544 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47398 * 54.99853 * 14 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 14 2 1 36 36 H 0.97000 * 120.00420 * 0.02562 * 15 14 2 37 37 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 38 38 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 39 39 H 1.07988 * 119.98044 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00534 * 180.25124 * 21 20 19 41 41 H 1.08006 * 119.99261 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 2.0019 -0.4205 -3.6855 7 1 2.5630 -1.3378 -3.7864 8 6 1.6351 0.2966 -4.8160 9 7 0.9510 1.4143 -4.6932 10 14 2.1125 -0.3246 -6.5118 11 1 2.8734 -1.5930 -6.3782 12 1 0.8863 -0.5646 -7.3144 13 1 2.9580 0.6900 -7.1908 14 6 2.0400 -0.7213 1.2493 15 7 1.6525 0.0354 2.4423 16 6 1.9964 -0.4130 3.6659 17 8 2.6263 -1.4431 3.7793 18 6 1.5973 0.3651 4.8933 19 6 2.1007 -0.3446 6.1237 20 6 1.3063 -1.2861 6.7515 21 6 1.7685 -1.9420 7.8767 22 6 3.0236 -1.6485 8.3821 23 9 3.4742 -2.2851 9.4852 24 6 3.8169 -0.7008 7.7558 25 17 5.3913 -0.3315 8.3872 26 6 3.3538 -0.0496 6.6268 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7996 -1.2056 31 1 1.6053 -1.7199 -1.2951 32 1 1.1489 0.8593 -2.3518 33 1 0.6950 1.9156 -5.4831 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 1.1483 0.8592 2.3517 37 1 2.0312 1.3640 4.8473 38 1 0.5109 0.4426 4.9370 39 1 0.3255 -1.5120 6.3601 40 1 1.1491 -2.6802 8.3642 41 1 3.9717 0.6890 6.1378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753634351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:41 Heat of formation + Delta-G solvation = -66.342925 kcal Electronic energy + Delta-G solvation = -24054.212164 eV Core-core repulsion = 20102.181872 eV Total energy + Delta-G solvation = -3952.030293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.31524 -40.37081 -39.11930 -37.02388 -36.78729 -34.41424 -33.11466 -32.40943 -31.39607 -30.11497 -28.13865 -26.34642 -25.15257 -23.63934 -22.78937 -22.06624 -20.65684 -19.85746 -18.21849 -17.47959 -17.17830 -16.84686 -16.66685 -16.09859 -15.79705 -15.59620 -14.74988 -14.59741 -14.46097 -14.30288 -13.99997 -13.85369 -13.62156 -13.25016 -13.06229 -12.85845 -12.56746 -12.40746 -12.20282 -12.06916 -11.82994 -11.75515 -11.32042 -11.09835 -10.95185 -10.74971 -10.61092 -10.46924 -10.12698 -9.96308 -9.70891 -9.41165 -9.11246 -8.98527 -8.90969 -6.95226 -5.79971 -3.08373 0.51671 0.64496 1.61137 2.48584 2.82402 3.26297 3.41666 3.47850 3.49762 3.66864 4.07288 4.18619 4.56749 4.57096 4.64322 4.66669 4.83888 5.01574 5.03487 5.16407 5.21367 5.33398 5.39804 5.45624 5.55094 5.61924 5.76090 5.90352 5.91811 5.94196 6.06294 6.19164 6.23625 6.34044 6.41504 6.60950 6.73315 6.82574 7.38035 7.68646 8.08888 8.39184 9.50645 10.07562 10.42300 11.43056 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.001743 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.296391 B =16061.341012 C =16424.000497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.724 5.724 16 C 0.510 3.490 17 O -0.534 6.534 18 C -0.104 4.104 19 C -0.061 4.061 20 C -0.071 4.071 21 C -0.140 4.140 22 C 0.107 3.893 23 F -0.128 7.128 24 C -0.071 4.071 25 Cl -0.051 7.051 26 C -0.068 4.068 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -0.743 28.950 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.410 6.410 18 C -0.144 4.144 19 C -0.062 4.062 20 C -0.089 4.089 21 C -0.159 4.159 22 C 0.086 3.914 23 F -0.107 7.107 24 C -0.099 4.099 25 Cl -0.022 7.022 26 C -0.087 4.087 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.261 -1.604 28.983 29.028 hybrid contribution 0.088 0.299 -0.827 0.884 sum 0.349 -1.305 28.155 28.188 Atomic orbital electron populations 1.21793 0.94653 1.01931 1.01493 1.21552 0.96707 1.00495 0.94189 0.90519 1.20580 0.96631 0.94223 0.85395 1.42344 1.66936 1.27672 1.00598 1.19284 1.28578 1.05431 0.83640 0.91089 1.24741 1.01032 0.97424 0.97891 1.69660 1.43621 1.16631 1.28398 0.86108 0.77601 0.77853 0.84589 1.20529 1.21868 1.21875 1.21428 1.00175 0.95256 0.82862 1.46070 1.57681 1.27978 1.05899 1.20398 0.79844 0.85873 0.84370 1.90754 1.39413 1.24261 1.86610 1.20700 1.03708 0.99898 0.90085 1.19278 0.93793 0.97386 0.95720 1.20984 1.00228 0.93932 0.93763 1.21097 0.94314 1.02200 0.98242 1.17421 0.93614 0.94292 0.86030 1.91540 1.89141 1.80030 1.49973 1.20922 0.89315 1.00931 0.98739 1.98394 1.23850 1.93679 1.86284 1.20816 0.95395 0.99153 0.93316 0.92834 0.93905 0.91139 0.96129 0.95998 0.78216 0.93573 0.91329 0.91341 0.76428 0.87349 0.87235 0.84293 0.83661 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.16 3.08 5.65 -4.04 -0.02 3.05 16 5 N -0.73 -17.92 5.33 -59.91 -0.32 -18.24 16 6 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 15 N -0.72 -7.06 5.28 -60.29 -0.32 -7.37 16 16 C 0.51 5.27 7.82 -10.98 -0.09 5.19 16 17 O -0.53 -7.93 16.03 5.56 0.09 -7.84 16 18 C -0.10 -0.64 5.83 -29.03 -0.17 -0.81 16 19 C -0.06 -0.48 4.37 -104.62 -0.46 -0.94 16 20 C -0.07 -0.52 9.70 -39.58 -0.38 -0.90 16 21 C -0.14 -1.08 10.03 -39.52 -0.40 -1.47 16 22 C 0.11 1.02 7.28 -39.39 -0.29 0.73 16 23 F -0.13 -1.32 16.84 2.25 0.04 -1.29 16 24 C -0.07 -0.69 6.33 -39.44 -0.25 -0.94 16 25 Cl -0.05 -0.49 28.62 -51.86 -1.48 -1.97 16 26 C -0.07 -0.59 9.48 -39.56 -0.38 -0.96 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.45 7.18 -51.93 -0.37 0.07 16 29 H 0.07 1.15 7.18 -51.93 -0.37 0.78 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 2.89 7.65 -40.82 -0.31 2.57 16 37 H 0.11 0.43 8.08 -51.93 -0.42 0.02 16 38 H 0.11 0.39 8.08 -51.93 -0.42 -0.02 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -33.44 368.68 -8.85 -42.29 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.53 Total: 4.84 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.58 Total: -6.14 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.09 Total: -52.67 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.44 -8.85 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753634351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.053 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds