Wall clock time and date at job start Tue Mar 31 2020 16:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34959 * 125.63102 * 2 1 4 4 C 1.35488 * 108.98082 * 180.02562 * 3 2 1 5 5 C 1.39796 * 107.84370 * 359.77736 * 4 3 2 6 6 C 1.37690 * 125.63583 * 180.02562 * 2 1 3 7 7 C 1.46492 * 126.26492 * 359.92405 * 6 2 1 8 8 O 1.21623 * 120.00040 * 180.02562 * 7 6 2 9 9 O 1.34894 * 119.99800 * 0.02562 * 7 6 2 10 10 C 1.45207 * 116.99560 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46662 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00208 * 359.72502 * 11 10 9 13 13 N 1.34771 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.39242 * 120.00283 * 175.70147 * 13 11 10 15 15 C 1.39478 * 119.83626 * 214.99647 * 14 13 11 16 16 C 1.36371 * 120.16900 * 179.76076 * 15 14 13 17 17 C 1.40871 * 119.82814 * 0.51466 * 16 15 14 18 18 C 1.41151 * 120.16332 * 179.71947 * 17 16 15 19 19 H 1.08008 * 119.99993 * 214.80476 * 18 17 16 20 20 C 1.39908 * 120.00071 * 34.80442 * 18 17 16 21 21 N 1.30860 * 120.00207 * 355.55453 * 20 18 17 22 22 Si 1.86802 * 119.99797 * 175.55254 * 20 18 17 23 23 H 1.48502 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46723 * 119.99806 * 22 20 18 25 25 H 1.48497 * 109.47173 * 239.99773 * 22 20 18 26 26 C 1.40861 * 119.67150 * 359.73935 * 17 16 15 27 27 C 1.36375 * 119.83011 * 0.02562 * 26 17 16 28 28 H 1.09007 * 109.46778 * 269.95467 * 1 2 3 29 29 H 1.08996 * 109.47034 * 29.95675 * 1 2 3 30 30 H 1.08995 * 109.46776 * 149.96002 * 1 2 3 31 31 H 1.08000 * 125.51362 * 0.02562 * 3 2 1 32 32 H 1.08001 * 126.07725 * 179.97438 * 4 3 2 33 33 H 1.08007 * 126.51464 * 180.22716 * 5 4 3 34 34 H 1.09000 * 109.47262 * 60.00280 * 10 9 7 35 35 H 1.08998 * 109.47264 * 300.00000 * 10 9 7 36 36 H 0.97002 * 120.00323 * 355.71108 * 13 11 10 37 37 H 1.08002 * 119.91712 * 0.02562 * 15 14 13 38 38 H 1.08005 * 120.08599 * 180.25484 * 16 15 14 39 39 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.08717 * 179.97438 * 26 17 16 41 41 H 1.08003 * 119.91537 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5494 0.7087 -0.0006 5 6 3.5785 -0.6889 0.0042 6 6 2.2673 -1.1191 -0.0005 7 6 1.8122 -2.5115 0.0004 8 8 2.6244 -3.4167 0.0003 9 8 0.4922 -2.7896 0.0014 10 6 0.1141 -4.1916 0.0018 11 6 -1.3886 -4.3064 0.0022 12 8 -2.0733 -3.3053 0.0073 13 7 -1.9715 -5.5215 0.0021 14 6 -3.3568 -5.6291 0.0929 15 6 -3.9258 -6.6931 0.7926 16 6 -5.2816 -6.8025 0.8900 17 6 -6.1081 -5.8433 0.2724 18 6 -7.5124 -5.9530 0.3637 19 1 -8.1329 -5.6482 -0.4661 20 6 -8.1005 -6.4564 1.5291 21 7 -7.3476 -6.9066 2.5001 22 14 -9.9605 -6.4859 1.6989 23 1 -10.5787 -5.9253 0.4705 24 1 -10.4181 -7.8860 1.8880 25 1 -10.3634 -5.6706 2.8728 26 6 -5.5262 -4.7746 -0.4370 27 6 -4.1686 -4.6758 -0.5216 28 1 -0.3633 -0.0008 1.0278 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5144 31 1 1.9023 2.1190 0.0004 32 1 4.4088 1.3628 -0.0011 33 1 4.4597 -1.3134 0.0085 34 1 0.5161 -4.6762 0.8915 35 1 0.5148 -4.6762 -0.8885 36 1 -1.4261 -6.3212 -0.0612 37 1 -3.2909 -7.4299 1.2622 38 1 -5.7207 -7.6247 1.4356 39 1 -7.7553 -7.2560 3.3079 40 1 -6.1534 -4.0357 -0.9134 41 1 -3.7210 -3.8572 -1.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007833726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:57 Heat of formation + Delta-G solvation = -39.936495 kcal Electronic energy + Delta-G solvation = -26193.027643 eV Core-core repulsion = 22232.202479 eV Total energy + Delta-G solvation = -3960.825164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.71403 -40.33539 -39.46029 -37.39174 -36.44993 -34.53601 -33.13647 -33.03129 -30.44014 -29.69833 -29.37705 -28.04472 -26.72098 -24.93801 -23.49661 -21.74667 -20.97123 -20.83396 -20.14646 -19.75934 -18.19545 -17.54005 -17.37419 -16.90994 -16.78052 -16.13381 -15.56970 -15.43065 -15.21036 -14.68566 -14.23888 -13.97829 -13.71467 -13.41332 -13.38317 -12.86678 -12.83000 -12.72072 -12.62569 -12.45457 -12.20453 -12.14640 -11.78216 -11.44900 -11.23530 -11.08010 -10.95121 -10.91807 -10.79296 -10.08677 -9.56693 -9.54168 -9.23311 -9.04179 -8.98145 -8.61118 -7.62456 -6.95857 -6.68117 -4.40983 0.99603 2.12553 2.39467 2.41437 2.56587 2.89522 2.93633 3.02215 3.06499 3.11600 3.23137 3.62842 3.93459 4.45584 4.62762 4.63879 4.70354 4.80574 4.93941 4.98233 5.10228 5.14144 5.21910 5.57383 5.58347 5.79408 5.81836 6.07960 6.12505 6.35153 6.41981 6.63366 6.65886 6.81759 6.88552 6.99222 7.11310 7.21758 7.50920 7.56394 7.64102 7.76937 7.99300 8.13481 8.24046 8.50975 8.60628 8.86397 8.91983 10.22880 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.002136 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.299588 B =13106.880501 C =13788.598473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.413 5.413 3 C 0.031 3.969 4 C -0.218 4.218 5 C -0.098 4.098 6 C -0.050 4.050 7 C 0.538 3.462 8 O -0.503 6.503 9 O -0.333 6.333 10 C 0.052 3.948 11 C 0.500 3.500 12 O -0.513 6.513 13 N -0.644 5.644 14 C 0.000 4.000 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.810 5.810 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.206 4.206 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.278 0.722 40 H 0.097 0.903 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 9.507 -3.277 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.086 5.086 3 C -0.106 4.106 4 C -0.241 4.241 5 C -0.124 4.124 6 C -0.160 4.160 7 C 0.384 3.616 8 O -0.391 6.391 9 O -0.249 6.249 10 C -0.025 4.025 11 C 0.285 3.715 12 O -0.388 6.388 13 N -0.288 5.288 14 C -0.092 4.092 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.437 5.437 22 Si 0.741 3.259 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.226 4.226 27 C -0.103 4.103 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.189 0.811 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.232 0.768 37 H 0.111 0.889 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.627 9.780 -3.026 18.682 hybrid contribution -0.487 -0.513 0.327 0.779 sum 15.140 9.267 -2.698 17.955 Atomic orbital electron populations 1.22444 0.74951 1.05858 1.04774 1.44083 1.07412 1.05248 1.51869 1.22031 0.90832 0.91861 1.05919 1.20876 0.96202 0.94698 1.12352 1.21336 0.94014 0.95116 1.01940 1.19363 0.90857 0.83777 1.21996 1.19856 0.80511 0.88147 0.73105 1.90898 1.54838 1.46349 1.46996 1.86647 1.25443 1.28495 1.84346 1.22753 0.94352 0.80421 1.05014 1.19908 0.88380 0.84515 0.78682 1.90710 1.64173 1.36007 1.47901 1.42777 1.07053 1.07057 1.71936 1.17216 0.79724 1.02694 1.09573 1.20314 0.95914 0.97760 0.99772 1.21205 0.90991 1.00632 1.03343 1.17753 0.93706 0.89086 0.89626 1.19554 0.91963 1.36933 1.00510 0.90474 1.25900 1.00723 0.92636 0.95389 1.69757 1.37001 1.31274 1.05672 0.86133 0.82010 0.78552 0.79216 1.18549 1.19960 1.19950 1.20805 0.93376 0.99798 1.08634 1.20383 0.93486 0.97827 0.98636 0.89900 0.89434 0.87331 0.81083 0.83548 0.83157 0.88061 0.88223 0.76783 0.88941 0.84935 0.91109 0.88509 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 10.56 59.85 0.63 1.20 16 2 N -0.41 -4.31 3.15 -120.40 -0.38 -4.69 16 3 C 0.03 0.26 11.35 -17.16 -0.19 0.06 16 4 C -0.22 -1.87 10.81 -39.98 -0.43 -2.30 16 5 C -0.10 -1.05 10.66 -39.09 -0.42 -1.46 16 6 C -0.05 -0.61 6.88 -82.00 -0.56 -1.18 16 7 C 0.54 7.38 7.92 34.06 0.27 7.65 16 8 O -0.50 -7.59 16.68 -19.36 -0.32 -7.91 16 9 O -0.33 -4.64 7.19 -47.71 -0.34 -4.99 16 10 C 0.05 0.66 5.96 36.01 0.21 0.87 16 11 C 0.50 8.24 7.74 -10.99 -0.09 8.16 16 12 O -0.51 -10.42 13.93 -14.11 -0.20 -10.62 16 13 N -0.64 -10.60 5.30 -9.74 -0.05 -10.65 16 14 C 0.00 -0.01 6.30 -83.57 -0.53 -0.53 16 15 C -0.12 -2.59 9.90 -39.79 -0.39 -2.98 16 16 C -0.14 -3.55 8.62 -39.26 -0.34 -3.89 16 17 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 18 C -0.46 -12.00 9.02 -37.85 -0.34 -12.34 16 19 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 20 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 21 N -0.81 -20.69 10.60 55.55 0.59 -20.10 16 22 Si 0.92 18.67 29.56 -169.99 -5.03 13.65 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.21 -5.08 9.74 -39.26 -0.38 -5.46 16 27 C -0.08 -1.93 8.61 -39.79 -0.34 -2.27 16 28 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.11 1.27 6.15 -51.93 -0.32 0.95 16 31 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.40 4.95 8.82 -40.82 -0.36 4.59 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 3.44 6.13 -52.48 -0.32 3.12 16 39 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 40 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.11 2.42 6.23 -52.48 -0.33 2.09 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -31.88 359.09 -8.59 -40.47 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.68 Total: 10.23 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.59 Total: -10.81 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.16 Total: -35.44 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.86 Total: -23.51 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.88 -8.59 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007833726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.532 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds