Wall clock time and date at job start Tue Mar 31 2020 16:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34959 * 125.63102 * 2 1 4 4 C 1.35488 * 108.98082 * 180.02562 * 3 2 1 5 5 C 1.39796 * 107.84370 * 359.77736 * 4 3 2 6 6 C 1.37690 * 125.63583 * 180.02562 * 2 1 3 7 7 C 1.46492 * 126.26492 * 359.92405 * 6 2 1 8 8 O 1.21623 * 120.00040 * 180.02562 * 7 6 2 9 9 O 1.34894 * 119.99800 * 0.02562 * 7 6 2 10 10 C 1.45207 * 116.99560 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46662 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00208 * 359.72502 * 11 10 9 13 13 N 1.34771 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.39242 * 120.00283 * 175.70147 * 13 11 10 15 15 C 1.39478 * 119.83626 * 214.99647 * 14 13 11 16 16 C 1.36371 * 120.16900 * 179.76076 * 15 14 13 17 17 C 1.40871 * 119.82814 * 0.51466 * 16 15 14 18 18 C 1.41151 * 120.16332 * 179.71947 * 17 16 15 19 19 H 1.08008 * 119.99993 * 214.80476 * 18 17 16 20 20 C 1.39908 * 120.00071 * 34.80442 * 18 17 16 21 21 N 1.30860 * 120.00207 * 355.55453 * 20 18 17 22 22 Si 1.86802 * 119.99797 * 175.55254 * 20 18 17 23 23 H 1.48502 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46723 * 119.99806 * 22 20 18 25 25 H 1.48497 * 109.47173 * 239.99773 * 22 20 18 26 26 C 1.40861 * 119.67150 * 359.73935 * 17 16 15 27 27 C 1.36375 * 119.83011 * 0.02562 * 26 17 16 28 28 H 1.09007 * 109.46778 * 269.95467 * 1 2 3 29 29 H 1.08996 * 109.47034 * 29.95675 * 1 2 3 30 30 H 1.08995 * 109.46776 * 149.96002 * 1 2 3 31 31 H 1.08000 * 125.51362 * 0.02562 * 3 2 1 32 32 H 1.08001 * 126.07725 * 179.97438 * 4 3 2 33 33 H 1.08007 * 126.51464 * 180.22716 * 5 4 3 34 34 H 1.09000 * 109.47262 * 60.00280 * 10 9 7 35 35 H 1.08998 * 109.47264 * 300.00000 * 10 9 7 36 36 H 0.97002 * 120.00323 * 355.71108 * 13 11 10 37 37 H 1.08002 * 119.91712 * 0.02562 * 15 14 13 38 38 H 1.08005 * 120.08599 * 180.25484 * 16 15 14 39 39 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.08717 * 179.97438 * 26 17 16 41 41 H 1.08003 * 119.91537 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5494 0.7087 -0.0006 5 6 3.5785 -0.6889 0.0042 6 6 2.2673 -1.1191 -0.0005 7 6 1.8122 -2.5115 0.0004 8 8 2.6244 -3.4167 0.0003 9 8 0.4922 -2.7896 0.0014 10 6 0.1141 -4.1916 0.0018 11 6 -1.3886 -4.3064 0.0022 12 8 -2.0733 -3.3053 0.0073 13 7 -1.9715 -5.5215 0.0021 14 6 -3.3568 -5.6291 0.0929 15 6 -3.9258 -6.6931 0.7926 16 6 -5.2816 -6.8025 0.8900 17 6 -6.1081 -5.8433 0.2724 18 6 -7.5124 -5.9530 0.3637 19 1 -8.1329 -5.6482 -0.4661 20 6 -8.1005 -6.4564 1.5291 21 7 -7.3476 -6.9066 2.5001 22 14 -9.9605 -6.4859 1.6989 23 1 -10.5787 -5.9253 0.4705 24 1 -10.4181 -7.8860 1.8880 25 1 -10.3634 -5.6706 2.8728 26 6 -5.5262 -4.7746 -0.4370 27 6 -4.1686 -4.6758 -0.5216 28 1 -0.3633 -0.0008 1.0278 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5144 31 1 1.9023 2.1190 0.0004 32 1 4.4088 1.3628 -0.0011 33 1 4.4597 -1.3134 0.0085 34 1 0.5161 -4.6762 0.8915 35 1 0.5148 -4.6762 -0.8885 36 1 -1.4261 -6.3212 -0.0612 37 1 -3.2909 -7.4299 1.2622 38 1 -5.7207 -7.6247 1.4356 39 1 -7.7553 -7.2560 3.3079 40 1 -6.1534 -4.0357 -0.9134 41 1 -3.7210 -3.8572 -1.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007833726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:56 Heat of formation + Delta-G solvation = -57.174883 kcal Electronic energy + Delta-G solvation = -26193.775156 eV Core-core repulsion = 22232.202479 eV Total energy + Delta-G solvation = -3961.572677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51145 -41.51973 -40.76014 -39.08286 -37.57018 -36.19612 -34.78671 -33.85507 -31.68914 -31.42300 -30.74110 -29.36635 -27.44656 -26.65285 -24.52130 -23.42524 -22.65012 -21.61292 -21.40883 -20.93698 -19.30795 -19.02998 -18.81191 -17.94351 -17.86630 -17.68565 -17.00396 -16.50026 -16.37312 -15.92927 -15.66824 -15.34804 -14.98050 -14.60584 -14.43911 -14.27289 -14.17661 -13.96692 -13.70890 -13.60529 -13.31318 -13.27408 -13.21194 -12.92629 -12.89755 -12.77833 -12.49567 -12.00296 -11.99381 -11.78393 -11.40799 -11.26081 -10.88538 -10.66246 -9.78430 -9.48926 -9.35725 -8.77817 -8.52498 -6.35263 0.11532 0.72177 1.10072 1.12229 1.39034 1.39580 1.53880 1.64667 1.67962 1.83068 2.07160 2.23017 2.38475 2.78330 3.50488 3.59855 3.67860 3.95422 3.98586 4.00699 4.16777 4.37731 4.38205 4.41827 4.50256 4.52543 4.81681 4.91010 4.98360 5.08617 5.10784 5.12590 5.25199 5.30078 5.39696 5.67649 5.70295 5.86389 5.88158 5.98278 6.11057 6.23422 6.36389 6.50372 6.60848 6.66560 6.95072 6.96604 7.22855 8.40272 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.002136 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.299588 B =13106.880501 C =13788.598473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.419 5.419 3 C 0.045 3.955 4 C -0.222 4.222 5 C -0.101 4.101 6 C -0.092 4.092 7 C 0.539 3.461 8 O -0.525 6.525 9 O -0.344 6.344 10 C 0.059 3.941 11 C 0.504 3.496 12 O -0.552 6.552 13 N -0.635 5.635 14 C 0.018 3.982 15 C -0.115 4.115 16 C -0.160 4.160 17 C 0.068 3.932 18 C -0.495 4.495 19 H 0.073 0.927 20 C 0.027 3.973 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.269 1.269 26 C -0.221 4.221 27 C -0.094 4.094 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.210 0.790 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.422 0.578 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.861 10.601 -3.138 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.093 5.093 3 C -0.092 4.092 4 C -0.245 4.245 5 C -0.128 4.128 6 C -0.201 4.201 7 C 0.387 3.613 8 O -0.416 6.416 9 O -0.261 6.261 10 C -0.018 4.018 11 C 0.291 3.709 12 O -0.430 6.430 13 N -0.282 5.282 14 C -0.075 4.075 15 C -0.135 4.135 16 C -0.181 4.181 17 C 0.065 3.935 18 C -0.526 4.526 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.468 5.468 22 Si 0.809 3.191 23 H -0.184 1.184 24 H -0.188 1.188 25 H -0.194 1.194 26 C -0.241 4.241 27 C -0.114 4.114 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.227 0.773 32 H 0.191 0.809 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.260 0.740 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.195 10.848 -2.898 20.536 hybrid contribution -0.744 -0.730 0.248 1.072 sum 16.450 10.118 -2.651 19.494 Atomic orbital electron populations 1.22425 0.74755 1.06029 1.04591 1.44228 1.07671 1.05385 1.52027 1.22765 0.90552 0.92821 1.03089 1.21264 0.97436 0.93962 1.11792 1.21628 0.93626 0.96467 1.01089 1.19451 0.91860 0.83707 1.25072 1.20103 0.79973 0.88759 0.72492 1.90869 1.55078 1.47063 1.48562 1.86658 1.25888 1.29001 1.84506 1.22743 0.91058 0.80625 1.07383 1.20527 0.89966 0.83573 0.76871 1.90701 1.65540 1.37373 1.49396 1.42641 1.05318 1.08491 1.71743 1.17250 0.81945 1.01122 1.07158 1.20565 0.95243 0.98527 0.99189 1.21187 0.92364 1.00422 1.04078 1.18067 0.94408 0.90080 0.90910 1.19759 0.92360 1.39026 1.01448 0.90887 1.26743 1.05460 0.91772 0.94543 1.69818 1.38921 1.31821 1.06212 0.85057 0.75947 0.78965 0.79082 1.18381 1.18798 1.19440 1.20933 0.94327 0.99815 1.08989 1.20513 0.93183 0.98538 0.99157 0.90247 0.86500 0.89901 0.77290 0.80859 0.82830 0.85855 0.85520 0.74031 0.85553 0.86296 0.90446 0.88473 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 10.56 127.77 1.35 2.46 16 2 N -0.42 -8.08 3.15 -534.84 -1.68 -9.77 16 3 C 0.05 0.61 11.35 83.58 0.95 1.56 16 4 C -0.22 -3.19 10.81 22.01 0.24 -2.95 16 5 C -0.10 -2.03 10.66 22.59 0.24 -1.79 16 6 C -0.09 -2.18 6.88 40.32 0.28 -1.91 16 7 C 0.54 14.54 7.92 69.97 0.55 15.09 16 8 O -0.53 -15.53 16.68 19.43 0.32 -15.21 16 9 O -0.34 -9.38 7.19 -51.69 -0.37 -9.75 16 10 C 0.06 1.37 5.96 71.24 0.42 1.80 16 11 C 0.50 15.91 7.74 87.66 0.68 16.59 16 12 O -0.55 -22.35 13.93 15.74 0.22 -22.13 16 13 N -0.64 -19.67 5.30 -303.11 -1.61 -21.28 16 14 C 0.02 0.77 6.30 38.56 0.24 1.01 16 15 C -0.12 -5.00 9.90 22.13 0.22 -4.78 16 16 C -0.16 -8.22 8.62 22.48 0.19 -8.02 16 17 C 0.07 3.68 5.55 -21.28 -0.12 3.56 16 18 C -0.50 -26.89 9.02 23.39 0.21 -26.68 16 19 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 20 C 0.03 1.36 5.42 85.24 0.46 1.82 16 21 N -0.84 -43.84 10.60 21.82 0.23 -43.61 16 22 Si 0.99 38.74 29.56 68.60 2.03 40.77 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 26 C -0.22 -11.25 9.74 22.48 0.22 -11.03 16 27 C -0.09 -4.38 8.61 22.13 0.19 -4.19 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.95 6.15 -2.39 -0.01 1.93 16 31 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.42 9.22 8.82 -92.71 -0.82 8.41 16 37 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.12 6.36 6.13 -2.91 -0.02 6.35 16 39 H 0.28 13.47 8.30 -92.71 -0.77 12.70 16 40 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.11 5.03 6.23 -2.91 -0.02 5.01 16 Total: -1.00 -71.93 359.09 5.74 -66.19 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.27 Total: 32.23 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 6.33 Total: -17.45 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -3.06 Total: -74.66 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: 0.17 Total: -47.08 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -71.93 5.74 -66.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007833726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.016 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds