Wall clock time and date at job start Tue Mar 31 2020 15:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47683 * 2 1 4 4 C 1.53006 * 109.47036 * 120.00115 * 2 1 3 5 5 N 1.46495 * 109.47472 * 64.99774 * 4 2 1 6 6 C 1.46502 * 120.00026 * 270.00500 * 5 4 2 7 7 C 1.50699 * 109.46870 * 269.99458 * 6 5 4 8 8 H 1.08001 * 120.00187 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00226 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00739 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99899 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47043 * 89.99531 * 11 9 7 13 13 H 1.48497 * 109.47080 * 209.99624 * 11 9 7 14 14 H 1.48504 * 109.46905 * 330.00066 * 11 9 7 15 15 C 1.34778 * 120.00129 * 89.99961 * 5 4 2 16 16 S 1.71202 * 120.00217 * 180.02562 * 15 5 4 17 17 N 1.34783 * 119.99867 * 0.27537 * 15 5 4 18 18 C 1.40134 * 120.00015 * 174.22080 * 17 15 5 19 19 C 1.38791 * 120.05578 * 315.73691 * 18 17 15 20 20 C 1.38149 * 119.97745 * 179.74754 * 19 18 17 21 21 C 1.38478 * 120.08607 * 0.52425 * 20 19 18 22 22 F 1.35098 * 119.94712 * 179.77122 * 21 20 19 23 23 C 1.38458 * 120.10430 * 359.74731 * 21 20 19 24 24 C 1.38302 * 120.02189 * 359.97438 * 23 21 20 25 25 F 1.35104 * 120.04121 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47445 * 299.99980 * 1 2 3 28 28 H 1.08996 * 109.47238 * 60.00056 * 1 2 3 29 29 H 1.09000 * 109.47334 * 239.99493 * 2 1 3 30 30 H 1.08988 * 109.47528 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46425 * 300.00307 * 3 2 1 32 32 H 1.08998 * 109.46664 * 59.99542 * 3 2 1 33 33 H 1.08997 * 109.46670 * 304.99688 * 4 2 1 34 34 H 1.09003 * 109.47203 * 185.00112 * 4 2 1 35 35 H 1.08992 * 109.47090 * 29.99751 * 6 5 4 36 36 H 1.09000 * 109.46940 * 149.99893 * 6 5 4 37 37 H 0.96997 * 120.00759 * 180.02562 * 10 9 7 38 38 H 0.96996 * 119.99628 * 354.22896 * 17 15 5 39 39 H 1.07994 * 120.00919 * 0.02562 * 19 18 17 40 40 H 1.08003 * 119.95720 * 180.25284 * 20 19 18 41 41 H 1.08000 * 119.98787 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3744 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2076 8 1 1.5506 -2.8638 3.6569 9 6 -0.4983 -3.3811 3.9575 10 7 -0.3266 -3.7078 5.2198 11 14 -2.1920 -3.5137 3.1807 12 1 -2.3637 -4.8678 2.5957 13 1 -3.2311 -3.2869 4.2171 14 1 -2.3276 -2.4918 2.1117 15 6 2.4714 -3.0331 0.6117 16 16 2.0182 -4.6826 0.5426 17 7 3.6496 -2.6356 0.0915 18 6 4.5542 -3.5857 -0.4011 19 6 4.8090 -4.7430 0.3214 20 6 5.6971 -5.6810 -0.1683 21 6 6.3421 -5.4632 -1.3742 22 9 7.2136 -6.3802 -1.8482 23 6 6.0949 -4.3072 -2.0951 24 6 5.2022 -3.3679 -1.6118 25 9 4.9610 -2.2396 -2.3146 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2617 2.1369 34 1 3.1263 -0.6444 1.2952 35 1 -0.3485 -1.7532 1.6919 36 1 0.0042 -3.4297 1.2093 37 1 -1.0792 -4.0180 5.7473 38 1 3.8713 -1.6919 0.0583 39 1 4.3096 -4.9123 1.2639 40 1 5.8920 -6.5834 0.3922 41 1 6.5986 -4.1394 -3.0355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016280197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:37 Heat of formation + Delta-G solvation = -56.110132 kcal Electronic energy + Delta-G solvation = -26027.154551 eV Core-core repulsion = 22089.984481 eV Total energy + Delta-G solvation = -3937.170070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.13615 -49.99139 -41.40330 -39.82768 -37.12453 -35.81681 -34.46475 -31.94337 -31.14064 -29.70026 -28.17041 -28.04245 -25.46013 -24.36130 -23.43236 -22.77665 -21.33652 -19.83014 -19.23032 -19.10789 -19.01028 -18.06697 -17.18301 -17.01977 -16.76718 -16.52007 -16.35212 -16.31352 -15.86565 -15.57747 -15.15818 -15.05974 -14.77889 -14.41826 -14.06193 -13.97116 -13.85214 -13.52854 -13.28962 -13.10726 -12.98715 -12.78247 -12.61715 -12.47435 -12.31126 -12.16272 -12.02085 -11.82348 -11.75669 -11.68649 -10.78839 -10.57748 -10.13046 -9.35112 -8.80055 -8.31262 -8.28373 -6.33610 -0.37947 -0.00232 0.48986 0.87699 1.32864 1.41796 1.43400 1.51441 2.16183 2.32112 2.33099 2.76316 3.06522 3.24477 3.56727 3.59653 3.73125 3.84801 3.96342 4.06208 4.22765 4.26733 4.42103 4.55656 4.63895 4.70186 4.79826 4.83228 4.88796 4.91437 4.98038 4.99127 5.04534 5.10276 5.14939 5.32845 5.36488 5.41304 5.52976 5.58175 5.80767 6.21310 6.22896 6.64490 7.27229 8.86236 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.004428 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.113432 B = 6321.425944 C = 7957.815885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.084 3.916 5 N -0.522 5.522 6 C 0.219 3.781 7 C -0.516 4.516 8 H 0.033 0.967 9 C 0.025 3.975 10 N -0.941 5.941 11 Si 0.932 3.068 12 H -0.280 1.280 13 H -0.279 1.279 14 H -0.236 1.236 15 C 0.575 3.425 16 S -0.715 6.715 17 N -0.626 5.626 18 C 0.089 3.911 19 C -0.028 4.028 20 C -0.150 4.150 21 C 0.131 3.869 22 F -0.130 7.130 23 C -0.175 4.175 24 C 0.121 3.879 25 F -0.127 7.127 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.267 0.733 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.159 0.841 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 9.612 -15.317 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.125 4.125 3 C -0.196 4.196 4 C -0.040 4.040 5 N -0.223 5.223 6 C 0.098 3.902 7 C -0.555 4.555 8 H 0.051 0.949 9 C -0.174 4.174 10 N -0.581 5.581 11 Si 0.756 3.244 12 H -0.206 1.206 13 H -0.204 1.204 14 H -0.159 1.159 15 C 0.214 3.786 16 S -0.583 6.583 17 N -0.257 5.257 18 C -0.006 4.006 19 C -0.051 4.051 20 C -0.170 4.170 21 C 0.111 3.889 22 F -0.108 7.108 23 C -0.196 4.196 24 C 0.099 3.901 25 F -0.106 7.106 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.263 0.737 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.471 8.638 -15.152 20.875 hybrid contribution -0.586 0.601 0.307 0.894 sum 10.884 9.240 -14.845 20.596 Atomic orbital electron populations 1.21986 0.94992 1.01392 1.02901 1.21530 0.96881 0.98042 0.96028 1.21753 1.01770 0.92876 1.03220 1.22422 1.01511 0.78614 1.01470 1.47378 1.19154 1.07336 1.48402 1.20071 0.79749 0.97525 0.92884 1.21127 0.95610 1.44653 0.94143 0.94892 1.25541 1.02901 0.94015 0.94916 1.70006 1.33055 1.46042 1.09038 0.85943 0.79435 0.79815 0.79186 1.20603 1.20408 1.15880 1.21771 0.82321 0.93311 0.81205 1.93355 1.84314 0.99751 1.80859 1.41929 1.13521 1.10361 1.59905 1.17486 0.95155 0.93964 0.94000 1.21007 0.92501 0.91432 1.00138 1.21154 0.97860 1.01754 0.96261 1.17273 0.90896 0.87361 0.93401 1.91531 1.66520 1.64751 1.88042 1.20936 1.01916 0.93087 1.03624 1.16984 0.99751 0.85186 0.88208 1.91514 1.93358 1.48188 1.77502 0.94405 0.91895 0.90873 0.91344 0.91101 0.90998 0.91709 0.88118 0.88645 0.91726 0.93226 0.92382 0.73674 0.84729 0.82288 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.18 71.98 0.59 -2.95 16 2 C -0.10 -2.09 3.13 -10.79 -0.03 -2.12 16 3 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 4 C 0.08 2.12 4.62 86.38 0.40 2.52 16 5 N -0.52 -18.72 2.28 -714.17 -1.63 -20.35 16 6 C 0.22 9.70 3.06 85.63 0.26 9.97 16 7 C -0.52 -28.23 9.94 25.60 0.25 -27.98 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.03 1.42 5.47 84.65 0.46 1.88 16 10 N -0.94 -57.77 13.96 21.44 0.30 -57.47 16 11 Si 0.93 43.17 27.47 68.60 1.88 45.06 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 15 C 0.58 21.30 7.46 179.05 1.34 22.64 16 16 S -0.72 -33.46 24.67 -56.49 -1.39 -34.86 16 17 N -0.63 -17.57 4.99 -189.74 -0.95 -18.51 16 18 C 0.09 2.43 5.85 38.14 0.22 2.65 16 19 C -0.03 -0.82 7.88 22.38 0.18 -0.65 16 20 C -0.15 -3.57 10.02 22.31 0.22 -3.34 16 21 C 0.13 2.78 7.30 22.38 0.16 2.94 16 22 F -0.13 -2.70 17.26 44.97 0.78 -1.92 16 23 C -0.18 -3.37 10.00 22.34 0.22 -3.15 16 24 C 0.12 2.74 7.31 22.48 0.16 2.90 16 25 F -0.13 -2.72 17.08 44.97 0.77 -1.95 16 26 H 0.04 1.07 5.89 -2.39 -0.01 1.06 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 34 H 0.10 1.90 6.44 -2.39 -0.02 1.89 16 35 H 0.07 2.63 5.03 -2.39 -0.01 2.61 16 36 H 0.05 2.45 6.01 -2.39 -0.01 2.43 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.42 8.97 6.64 -92.71 -0.62 8.35 16 39 H 0.13 4.79 6.52 -2.91 -0.02 4.77 16 40 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -72.09 353.80 5.26 -66.83 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.40 Total: 19.07 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.11 Total: 4.10 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -2.28 Total: -96.33 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.54 Total: -3.87 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: -33.46 SS G_CDS: -1.39 Total: -34.86 kcal Total: -72.09 5.26 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016280197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.720 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds