Wall clock time and date at job start Tue Mar 31 2020 15:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46613 * 2 1 4 4 N 1.46503 * 109.46771 * 180.02562 * 3 2 1 5 5 C 1.38560 * 124.79886 * 89.99991 * 4 3 2 6 6 C 1.39092 * 132.30025 * 359.96394 * 5 4 3 7 7 C 1.37851 * 120.06386 * 180.02562 * 6 5 4 8 8 C 1.38634 * 120.57029 * 359.72533 * 7 6 5 9 9 C 1.37829 * 120.22770 * 0.55966 * 8 7 6 10 10 C 1.39293 * 119.78768 * 359.44059 * 9 8 7 11 11 C 1.47311 * 133.56538 * 180.28427 * 10 9 8 12 12 N 1.32509 * 134.20308 * 359.97438 * 11 10 9 13 13 N 1.28896 * 120.08461 * 180.02562 * 12 11 10 14 14 C 1.32941 * 121.55431 * 0.02562 * 13 12 11 15 15 S 1.76191 * 119.36072 * 179.97438 * 14 13 12 16 16 C 1.81003 * 100.00392 * 359.97438 * 15 14 13 17 17 C 1.50696 * 109.47296 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00292 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99701 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00201 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99745 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47246 * 90.00307 * 21 19 17 23 23 H 1.48503 * 109.47377 * 210.00683 * 21 19 17 24 24 H 1.48508 * 109.47329 * 330.00206 * 21 19 17 25 25 N 1.32640 * 121.27691 * 359.97438 * 14 13 12 26 26 C 1.32971 * 119.28580 * 0.02562 * 25 14 13 27 27 H 1.09002 * 109.47381 * 300.00010 * 1 2 3 28 28 H 1.08998 * 109.47467 * 60.00137 * 1 2 3 29 29 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46954 * 240.00547 * 2 1 3 31 31 H 1.08993 * 109.47030 * 119.99935 * 2 1 3 32 32 H 1.08993 * 109.47472 * 59.99765 * 3 2 1 33 33 H 1.09005 * 109.47017 * 299.99703 * 3 2 1 34 34 H 1.08009 * 119.96763 * 0.02878 * 6 5 4 35 35 H 1.07998 * 119.71371 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.88816 * 180.30013 * 8 7 6 37 37 H 1.08002 * 120.10986 * 179.72327 * 9 8 7 38 38 H 1.09006 * 109.46569 * 299.99478 * 16 15 14 39 39 H 1.08998 * 109.46784 * 59.99013 * 16 15 14 40 40 H 0.97003 * 120.00062 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2952 1.4428 -1.1387 6 6 3.9841 1.4424 -2.4944 7 6 4.9924 1.4422 -3.4344 8 6 6.3221 1.4482 -3.0420 9 6 6.6506 1.4427 -1.7035 10 6 5.6415 1.4430 -0.7433 11 6 5.6418 1.4436 0.7298 12 7 6.5919 1.4436 1.6535 13 7 6.2777 1.4436 2.9036 14 6 5.0095 1.4432 3.3022 15 16 4.6458 1.4427 5.0261 16 6 6.3250 1.4421 5.7018 17 6 6.2607 1.4422 7.2074 18 1 5.3032 1.4422 7.7070 19 6 7.4243 1.4413 7.9470 20 7 8.5902 1.4409 7.3386 21 14 7.3447 1.4407 9.8133 22 1 7.3228 0.0405 10.3074 23 1 8.5353 2.1400 10.3598 24 1 6.1125 2.1413 10.2564 25 7 4.0126 1.4432 2.4272 26 6 4.2889 1.4431 1.1265 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8901 34 1 2.9514 1.4422 -2.8110 35 1 4.7444 1.4422 -4.4855 36 1 7.1032 1.4529 -3.7878 37 1 7.6871 1.4429 -1.4000 38 1 6.8536 0.5520 5.3604 39 1 6.8540 2.3320 5.3608 40 1 9.4088 1.4406 7.8590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028918599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:28 Heat of formation + Delta-G solvation = 108.486913 kcal Electronic energy + Delta-G solvation = -24161.075666 eV Core-core repulsion = 20681.732246 eV Total energy + Delta-G solvation = -3479.343420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -42.31396 -39.89680 -37.49200 -34.87313 -34.39663 -33.20730 -32.25030 -30.26126 -30.07467 -28.61139 -27.20811 -25.36188 -24.22260 -23.13665 -22.57923 -21.80413 -21.36788 -18.86278 -18.60842 -17.14476 -16.76807 -16.29412 -16.13198 -15.88954 -15.27455 -14.86413 -14.65679 -14.49316 -14.41287 -14.12508 -13.49181 -13.28206 -12.65579 -12.59475 -12.41858 -12.38516 -12.28278 -12.14856 -11.92497 -11.60102 -11.54502 -11.18206 -11.14236 -11.12022 -10.88032 -10.79662 -10.44040 -9.96762 -9.68602 -9.44643 -8.91093 -8.86397 -8.60634 -8.17782 -7.06642 -6.20407 -4.29055 0.36194 0.65450 1.41687 1.58417 1.68321 2.15384 3.25353 3.27107 3.31468 3.38352 3.45621 3.78799 3.81949 3.96128 4.15996 4.32622 4.39935 4.48669 4.53736 4.70023 4.83860 4.88289 4.91547 5.08900 5.15427 5.15845 5.21517 5.31487 5.35058 5.42591 5.63612 5.66716 5.72558 5.88548 6.04712 6.10125 6.23656 6.31762 6.61352 6.70999 7.08799 7.16263 7.21614 7.67044 7.91545 8.70410 8.73483 9.34666 10.89824 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.002961 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.612457 B = 9455.083533 C =10948.020464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.113 3.887 4 N -0.482 5.482 5 C 0.154 3.846 6 C -0.136 4.136 7 C -0.077 4.077 8 C -0.146 4.146 9 C -0.044 4.044 10 C -0.076 4.076 11 C -0.025 4.025 12 N -0.128 5.128 13 N -0.286 5.286 14 C 0.267 3.733 15 S -0.003 6.003 16 C 0.063 3.937 17 C -0.528 4.528 18 H 0.068 0.932 19 C 0.072 3.928 20 N -0.880 5.880 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 N -0.491 5.491 26 C 0.364 3.636 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 -0.686 -22.984 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.008 4.008 4 N -0.176 5.176 5 C 0.050 3.950 6 C -0.157 4.157 7 C -0.097 4.097 8 C -0.166 4.166 9 C -0.063 4.063 10 C -0.082 4.082 11 C -0.179 4.179 12 N 0.019 4.981 13 N -0.142 5.142 14 C -0.108 4.108 15 S 0.234 5.766 16 C -0.085 4.085 17 C -0.568 4.568 18 H 0.086 0.914 19 C -0.134 4.134 20 N -0.517 5.517 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.195 1.195 25 N -0.222 5.222 26 C 0.109 3.891 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.584 -0.671 -21.421 24.853 hybrid contribution 0.475 -0.026 -0.255 0.539 sum -12.110 -0.697 -21.676 24.839 Atomic orbital electron populations 1.21674 0.94186 1.02471 1.02200 1.21930 0.96875 0.95925 1.03352 1.21953 0.75488 0.98635 1.04688 1.43656 1.05935 1.66793 1.01196 1.18211 0.88726 1.00282 0.87739 1.20060 1.00340 1.07158 0.88140 1.20936 0.92203 0.97510 0.99037 1.21002 0.96559 1.03672 0.95325 1.20699 0.98827 0.95384 0.91439 1.18241 0.92853 1.08065 0.89043 1.21528 0.91735 1.09360 0.95240 1.73302 1.28393 1.01013 0.95387 1.74609 1.16099 1.17190 1.06315 1.27066 0.87920 0.92931 1.02834 1.85855 1.20662 1.85795 0.84334 1.21504 0.85589 1.02908 0.98501 1.20589 0.93501 1.54386 0.88348 0.91381 1.24935 0.94807 0.94328 0.99322 1.69982 0.97496 1.48070 1.36112 0.86345 0.77918 0.78413 0.83924 1.20251 1.20849 1.19502 1.68256 1.35507 1.20462 0.97931 1.19090 0.89009 0.92696 0.88258 0.92067 0.92461 0.91993 0.91372 0.90980 0.88465 0.89088 0.85408 0.84969 0.85061 0.84660 0.92544 0.92528 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.25 6.26 -26.73 -0.17 -1.42 16 3 C 0.11 1.09 5.96 -4.04 -0.02 1.06 16 4 N -0.48 -6.36 2.81 -113.29 -0.32 -6.67 16 5 C 0.15 1.86 6.77 -83.72 -0.57 1.29 16 6 C -0.14 -1.16 9.85 -39.41 -0.39 -1.54 16 7 C -0.08 -0.56 10.01 -39.58 -0.40 -0.96 16 8 C -0.15 -1.20 10.03 -39.58 -0.40 -1.60 16 9 C -0.04 -0.49 10.09 -39.34 -0.40 -0.89 16 10 C -0.08 -1.07 6.35 -105.03 -0.67 -1.74 16 11 C -0.02 -0.45 7.60 -82.85 -0.63 -1.08 16 12 N -0.13 -2.69 11.67 33.33 0.39 -2.30 16 13 N -0.29 -6.57 10.29 30.23 0.31 -6.25 16 14 C 0.27 5.84 7.90 -90.43 -0.71 5.12 16 15 S 0.00 -0.07 22.17 -107.50 -2.38 -2.45 16 16 C 0.06 1.65 4.57 36.00 0.16 1.81 16 17 C -0.53 -14.58 9.13 -34.44 -0.31 -14.90 16 18 H 0.07 1.82 7.71 -52.49 -0.40 1.42 16 19 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 20 N -0.88 -25.65 13.29 55.43 0.74 -24.91 16 21 Si 0.91 21.01 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 N -0.49 -9.61 10.53 -12.51 -0.13 -9.74 16 26 C 0.36 6.35 7.87 -155.47 -1.22 5.12 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 34 H 0.13 0.76 7.92 -52.48 -0.42 0.34 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.06 1.58 8.12 -51.91 -0.42 1.16 16 39 H 0.06 1.59 8.11 -51.92 -0.42 1.16 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -31.94 360.46 -11.45 -43.39 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -5.01 Total: -4.04 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -5.45 Total: -8.44 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.99 Total: -49.88 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.38 Total: -2.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.94 -11.45 -43.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028918599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.877 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds