Wall clock time and date at job start Tue Mar 31 2020 15:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46613 * 2 1 4 4 N 1.46503 * 109.46771 * 180.02562 * 3 2 1 5 5 C 1.38560 * 124.79886 * 89.99991 * 4 3 2 6 6 C 1.39092 * 132.30025 * 359.96394 * 5 4 3 7 7 C 1.37851 * 120.06386 * 180.02562 * 6 5 4 8 8 C 1.38634 * 120.57029 * 359.72533 * 7 6 5 9 9 C 1.37829 * 120.22770 * 0.55966 * 8 7 6 10 10 C 1.39293 * 119.78768 * 359.44059 * 9 8 7 11 11 C 1.47311 * 133.56538 * 180.28427 * 10 9 8 12 12 N 1.32509 * 134.20308 * 359.97438 * 11 10 9 13 13 N 1.28896 * 120.08461 * 180.02562 * 12 11 10 14 14 C 1.32941 * 121.55431 * 0.02562 * 13 12 11 15 15 S 1.76191 * 119.36072 * 179.97438 * 14 13 12 16 16 C 1.81003 * 100.00392 * 359.97438 * 15 14 13 17 17 C 1.50696 * 109.47296 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00292 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99701 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00201 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99745 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47246 * 90.00307 * 21 19 17 23 23 H 1.48503 * 109.47377 * 210.00683 * 21 19 17 24 24 H 1.48508 * 109.47329 * 330.00206 * 21 19 17 25 25 N 1.32640 * 121.27691 * 359.97438 * 14 13 12 26 26 C 1.32971 * 119.28580 * 0.02562 * 25 14 13 27 27 H 1.09002 * 109.47381 * 300.00010 * 1 2 3 28 28 H 1.08998 * 109.47467 * 60.00137 * 1 2 3 29 29 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46954 * 240.00547 * 2 1 3 31 31 H 1.08993 * 109.47030 * 119.99935 * 2 1 3 32 32 H 1.08993 * 109.47472 * 59.99765 * 3 2 1 33 33 H 1.09005 * 109.47017 * 299.99703 * 3 2 1 34 34 H 1.08009 * 119.96763 * 0.02878 * 6 5 4 35 35 H 1.07998 * 119.71371 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.88816 * 180.30013 * 8 7 6 37 37 H 1.08002 * 120.10986 * 179.72327 * 9 8 7 38 38 H 1.09006 * 109.46569 * 299.99478 * 16 15 14 39 39 H 1.08998 * 109.46784 * 59.99013 * 16 15 14 40 40 H 0.97003 * 120.00062 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2952 1.4428 -1.1387 6 6 3.9841 1.4424 -2.4944 7 6 4.9924 1.4422 -3.4344 8 6 6.3221 1.4482 -3.0420 9 6 6.6506 1.4427 -1.7035 10 6 5.6415 1.4430 -0.7433 11 6 5.6418 1.4436 0.7298 12 7 6.5919 1.4436 1.6535 13 7 6.2777 1.4436 2.9036 14 6 5.0095 1.4432 3.3022 15 16 4.6458 1.4427 5.0261 16 6 6.3250 1.4421 5.7018 17 6 6.2607 1.4422 7.2074 18 1 5.3032 1.4422 7.7070 19 6 7.4243 1.4413 7.9470 20 7 8.5902 1.4409 7.3386 21 14 7.3447 1.4407 9.8133 22 1 7.3228 0.0405 10.3074 23 1 8.5353 2.1400 10.3598 24 1 6.1125 2.1413 10.2564 25 7 4.0126 1.4432 2.4272 26 6 4.2889 1.4431 1.1265 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8901 34 1 2.9514 1.4422 -2.8110 35 1 4.7444 1.4422 -4.4855 36 1 7.1032 1.4529 -3.7878 37 1 7.6871 1.4429 -1.4000 38 1 6.8536 0.5520 5.3604 39 1 6.8540 2.3320 5.3608 40 1 9.4088 1.4406 7.8590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028918599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:25 Heat of formation + Delta-G solvation = 90.802653 kcal Electronic energy + Delta-G solvation = -24161.842513 eV Core-core repulsion = 20681.732246 eV Total energy + Delta-G solvation = -3480.110267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.57260 -41.11996 -38.39268 -35.84704 -35.73690 -35.33051 -33.28303 -31.44488 -30.94617 -30.66849 -28.18972 -26.63499 -25.46067 -25.14576 -23.42154 -22.80755 -22.24737 -20.08346 -19.92668 -18.76274 -18.06834 -17.69810 -17.53301 -17.16494 -16.58381 -16.00585 -15.68835 -15.65719 -15.36391 -15.09950 -14.84972 -14.54528 -14.39901 -14.17017 -13.60839 -13.53150 -13.33584 -13.13647 -13.00503 -12.77186 -12.75413 -12.59931 -12.53019 -12.34488 -12.18781 -11.97074 -11.80828 -11.66082 -11.41717 -11.03621 -10.76305 -10.45974 -9.91458 -9.13120 -8.78166 -8.32987 -6.51296 -0.92109 -0.67059 0.06863 0.45580 0.56429 0.95926 1.39025 1.43162 1.44321 1.57463 2.19233 2.36591 2.50067 2.61651 2.75381 3.01159 3.01501 3.42029 3.54403 3.79378 3.84995 3.99068 4.10680 4.20002 4.26699 4.37883 4.42169 4.49453 4.55787 4.76660 4.87764 4.94690 5.00999 5.04153 5.07087 5.09299 5.27705 5.32342 5.36600 5.46954 5.50946 5.52507 5.77492 5.83811 6.02761 6.57244 7.18019 7.19289 8.79140 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.002961 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.612457 B = 9455.083533 C =10948.020464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.105 3.895 4 N -0.468 5.468 5 C 0.144 3.856 6 C -0.123 4.123 7 C -0.055 4.055 8 C -0.131 4.131 9 C -0.059 4.059 10 C -0.117 4.117 11 C -0.020 4.020 12 N -0.168 5.168 13 N -0.331 5.331 14 C 0.249 3.751 15 S 0.017 5.983 16 C 0.072 3.928 17 C -0.548 4.548 18 H 0.075 0.925 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.984 3.016 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.259 1.259 25 N -0.496 5.496 26 C 0.353 3.647 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.168 0.832 35 H 0.181 0.819 36 H 0.165 0.835 37 H 0.130 0.870 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.726 -0.579 -27.225 30.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.014 4.014 4 N -0.162 5.162 5 C 0.042 3.958 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.149 4.149 9 C -0.079 4.079 10 C -0.123 4.123 11 C -0.177 4.177 12 N -0.017 5.017 13 N -0.186 5.186 14 C -0.128 4.128 15 S 0.252 5.748 16 C -0.076 4.076 17 C -0.587 4.587 18 H 0.093 0.907 19 C -0.185 4.185 20 N -0.558 5.558 21 Si 0.806 3.194 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.183 1.183 25 N -0.227 5.227 26 C 0.095 3.905 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.153 0.847 34 H 0.185 0.815 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.158 -0.567 -25.714 29.855 hybrid contribution 1.202 -0.066 0.442 1.282 sum -13.956 -0.633 -25.273 28.877 Atomic orbital electron populations 1.21653 0.92212 1.03013 1.03135 1.21878 0.98441 0.94967 1.02165 1.22338 0.73137 0.99588 1.06295 1.43983 1.07186 1.65019 0.99985 1.18665 0.87385 1.00982 0.88799 1.20624 1.02919 1.04876 0.85944 1.21585 0.91038 0.93669 1.01131 1.21472 0.98485 1.00831 0.94149 1.20899 0.98215 0.96188 0.92627 1.18496 0.95218 1.11556 0.87018 1.22289 0.91765 1.06424 0.97174 1.73155 1.29754 1.03424 0.95323 1.74486 1.16911 1.19381 1.07781 1.26778 0.88386 0.94870 1.02752 1.85308 1.16656 1.87605 0.85194 1.21035 0.88118 0.99816 0.98629 1.20971 0.94155 1.54569 0.89026 0.90654 1.26005 0.94157 0.93356 1.04976 1.70126 0.98404 1.48874 1.38403 0.85179 0.78406 0.78909 0.76939 1.19226 1.20164 1.18276 1.68169 1.34600 1.20987 0.98924 1.19397 0.90053 0.92548 0.88456 0.92710 0.89936 0.91698 0.90234 0.94511 0.89597 0.84725 0.81454 0.80137 0.81705 0.85203 0.95758 0.95714 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.14 -2.12 6.26 30.60 0.19 -1.93 16 3 C 0.11 1.77 5.96 86.38 0.51 2.28 16 4 N -0.47 -11.78 2.81 -512.33 -1.44 -13.22 16 5 C 0.14 3.09 6.77 38.79 0.26 3.35 16 6 C -0.12 -1.36 9.85 22.38 0.22 -1.14 16 7 C -0.06 -0.42 10.01 22.27 0.22 -0.20 16 8 C -0.13 -1.51 10.03 22.27 0.22 -1.29 16 9 C -0.06 -1.25 10.09 22.43 0.23 -1.02 16 10 C -0.12 -3.27 6.35 -20.13 -0.13 -3.39 16 11 C -0.02 -0.77 7.60 42.10 0.32 -0.45 16 12 N -0.17 -7.71 11.67 -48.45 -0.57 -8.27 16 13 N -0.33 -16.83 10.29 -58.26 -0.60 -17.43 16 14 C 0.25 11.85 7.90 180.28 1.42 13.27 16 15 S 0.02 0.83 22.17 -56.49 -1.25 -0.43 16 16 C 0.07 4.15 4.57 71.23 0.33 4.48 16 17 C -0.55 -31.82 9.13 25.60 0.23 -31.58 16 18 H 0.08 4.16 7.71 -2.91 -0.02 4.14 16 19 C 0.02 0.98 5.46 84.66 0.46 1.44 16 20 N -0.92 -56.39 13.29 21.45 0.28 -56.10 16 21 Si 0.98 43.99 29.54 68.60 2.03 46.02 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 N -0.50 -20.71 10.53 -193.50 -2.04 -22.75 16 26 C 0.35 12.79 7.87 133.92 1.05 13.85 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.13 1.12 7.90 -2.38 -0.02 1.10 16 34 H 0.17 0.62 7.92 -2.91 -0.02 0.60 16 35 H 0.18 -0.14 8.06 -2.91 -0.02 -0.17 16 36 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.02 1.50 8.12 -2.39 -0.02 1.48 16 39 H 0.02 1.53 8.11 -2.40 -0.02 1.51 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -79.22 360.46 3.75 -75.47 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: 1.06 Total: -0.18 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.27 Total: -3.12 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.36 Total: -117.77 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -1.25 Total: -0.43 kcal Total: -79.22 3.75 -75.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028918599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.275 kcal (2) G-P(sol) polarization free energy of solvation -79.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds