Wall clock time and date at job start Tue Mar 31 2020 16:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35704 * 119.44052 * 2 1 4 4 C 1.35267 * 121.00205 * 179.70741 * 3 2 1 5 5 C 1.41141 * 119.86581 * 0.52669 * 4 3 2 6 6 C 1.48464 * 120.53743 * 179.76379 * 5 4 3 7 7 O 1.21472 * 120.00030 * 179.71910 * 6 5 4 8 8 N 1.34771 * 119.99648 * 359.70917 * 6 5 4 9 9 C 1.46505 * 119.99776 * 179.72622 * 8 6 5 10 10 C 1.50701 * 109.47121 * 180.27695 * 9 8 6 11 11 C 1.38298 * 119.92990 * 269.72896 * 10 9 8 12 12 C 1.38111 * 120.06447 * 179.72591 * 11 10 9 13 13 C 1.38881 * 119.92709 * 0.57231 * 12 11 10 14 14 O 1.35753 * 120.06444 * 179.68139 * 13 12 11 15 15 C 1.34828 * 116.99980 * 174.48247 * 14 13 12 16 16 H 1.08007 * 119.99669 * 5.05772 * 15 14 13 17 17 C 1.38650 * 120.00455 * 185.06005 * 15 14 13 18 18 N 1.31557 * 119.99598 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00379 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47176 * 89.99543 * 19 17 15 21 21 H 1.48492 * 109.46721 * 209.99844 * 19 17 15 22 22 H 1.48495 * 109.46695 * 329.99544 * 19 17 15 23 23 C 1.38877 * 119.86357 * 359.70135 * 13 12 11 24 24 C 1.38096 * 119.93329 * 0.02562 * 23 13 12 25 25 C 1.38299 * 118.92598 * 359.48050 * 5 4 3 26 26 C 1.34597 * 119.44340 * 179.97438 * 2 1 3 27 27 O 1.22011 * 119.96137 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47059 * 270.02245 * 1 2 3 29 29 H 1.08997 * 109.47392 * 30.02792 * 1 2 3 30 30 H 1.09003 * 109.46733 * 150.02982 * 1 2 3 31 31 H 1.08006 * 119.49483 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.06670 * 180.25917 * 4 3 2 33 33 H 0.96998 * 120.00475 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47232 * 300.28185 * 9 8 6 35 35 H 1.09001 * 109.46894 * 60.27844 * 9 8 6 36 36 H 1.07994 * 119.96878 * 359.97438 * 11 10 9 37 37 H 1.07993 * 120.03462 * 180.27464 * 12 11 10 38 38 H 0.97000 * 120.00019 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.03543 * 179.97438 * 23 13 12 40 40 H 1.08004 * 119.96668 * 180.02562 * 24 23 13 41 41 H 1.07996 * 120.49542 * 180.23403 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1818 0.0000 4 6 3.4842 1.2187 0.0059 5 6 4.2201 0.0143 0.0010 6 6 5.7046 0.0374 0.0021 7 8 6.3282 -1.0050 0.0029 8 7 6.3601 1.2150 0.0019 9 6 7.8250 1.2378 0.0091 10 6 8.3051 2.6663 0.0142 11 6 8.5361 3.3209 -1.1819 12 6 8.9707 4.6318 -1.1805 13 6 9.1871 5.2888 0.0238 14 8 9.6205 6.5753 0.0285 15 6 9.7007 7.1898 1.2259 16 1 9.5050 6.6351 2.1317 17 6 10.0344 8.5338 1.2945 18 7 10.2732 9.2093 0.1911 19 14 10.1462 9.3851 2.9535 20 1 11.5312 9.2698 3.4766 21 1 9.7932 10.8191 2.7987 22 1 9.2030 8.7429 3.9038 23 6 8.9596 4.6267 1.2233 24 6 8.5196 3.3178 1.2152 25 6 3.5361 -1.1876 0.0010 26 6 2.1266 -1.1721 0.0005 27 8 1.5056 -2.2224 0.0015 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 1.5747 2.1070 -0.0004 32 1 3.9996 2.1678 0.0101 33 1 5.8621 2.0474 0.0015 34 1 8.1920 0.7279 0.8998 35 1 8.2006 0.7315 -0.8801 36 1 8.3727 2.8078 -2.1180 37 1 9.1467 5.1440 -2.1149 38 1 10.5070 10.1495 0.2390 39 1 9.1273 5.1348 2.1615 40 1 8.3421 2.8025 2.1477 41 1 4.0738 -2.1242 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067928127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:20 Heat of formation + Delta-G solvation = -33.394954 kcal Electronic energy + Delta-G solvation = -25757.899034 eV Core-core repulsion = 21797.357532 eV Total energy + Delta-G solvation = -3960.541501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70873 -39.83689 -39.08819 -37.24721 -36.94563 -34.86103 -34.57368 -32.43042 -30.40111 -30.31218 -30.15978 -28.28701 -26.13370 -25.19165 -23.99402 -23.59586 -22.12059 -20.74062 -20.69354 -18.49285 -18.12900 -17.82916 -17.36468 -16.98655 -16.47409 -16.03252 -15.82123 -15.37834 -14.73135 -14.64756 -14.52843 -14.43866 -13.93908 -13.77624 -13.65980 -13.46159 -13.44062 -13.03605 -12.89699 -12.84118 -12.28016 -12.21242 -12.06011 -11.74225 -11.46659 -11.04203 -10.87085 -10.75533 -10.65760 -10.53735 -10.42220 -10.05759 -9.48851 -9.12028 -8.96616 -8.38624 -8.35342 -7.39870 -6.58326 -4.17336 0.11568 1.28817 1.97497 2.06562 2.20480 2.63552 3.02247 3.05564 3.10227 3.13837 3.42234 3.85670 4.09639 4.21448 4.33763 4.49374 4.67368 4.72950 4.77523 4.90376 4.96524 5.09710 5.14474 5.16944 5.34385 5.38363 5.59152 5.60862 5.73248 5.79699 5.84201 5.99440 6.06222 6.28220 6.33566 6.53331 6.60198 6.73737 6.89161 7.07364 7.20254 7.29158 7.40881 7.58564 7.64960 7.86173 8.02652 8.86938 9.54486 10.59003 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002138 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.278256 B =13093.621278 C =13962.019479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.497 5.497 3 C 0.132 3.868 4 C -0.213 4.213 5 C -0.030 4.030 6 C 0.548 3.452 7 O -0.531 6.531 8 N -0.709 5.709 9 C 0.178 3.822 10 C -0.218 4.218 11 C -0.053 4.053 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.172 6.172 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.041 3.959 18 N -0.858 5.858 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.237 4.237 24 C -0.050 4.050 25 C -0.173 4.173 26 C 0.512 3.488 27 O -0.545 6.545 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.403 0.597 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 -11.211 0.175 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.208 5.208 3 C 0.005 3.995 4 C -0.236 4.236 5 C -0.037 4.037 6 C 0.334 3.666 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.056 3.944 10 C -0.219 4.219 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.074 6.074 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.492 5.492 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.256 4.256 24 C -0.068 4.068 25 C -0.196 4.196 26 C 0.313 3.687 27 O -0.427 6.427 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.239 0.761 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.127 0.873 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.007 -12.212 -0.074 20.134 hybrid contribution -0.072 1.115 0.895 1.432 sum -16.080 -11.097 0.821 19.554 Atomic orbital electron populations 1.22212 0.76906 1.05182 1.04123 1.45404 1.09550 1.06810 1.59070 1.21867 0.93582 0.89437 0.94596 1.20722 0.92636 0.98662 1.11591 1.20558 0.93883 0.93897 0.95371 1.18340 0.86630 0.84254 0.77415 1.90779 1.68448 1.32259 1.49345 1.46293 1.08336 1.08001 1.73470 1.20064 0.77878 0.94255 1.02200 1.19173 1.13411 0.95586 0.93758 1.20539 0.96748 0.93324 0.96600 1.20222 1.09678 0.95286 0.96289 1.19450 0.90636 0.85994 0.93323 1.83979 1.70880 1.19428 1.33162 1.21358 1.49438 0.93174 0.83016 0.88884 1.25327 0.96290 0.95412 0.99430 1.70034 1.42381 1.09597 1.27218 0.85689 0.79066 0.78653 0.79926 1.19768 1.20166 1.19121 1.21159 1.10126 0.95819 0.98536 1.20650 0.96008 0.93780 0.96412 1.22729 0.92133 0.99768 1.04946 1.17096 0.88919 0.82893 0.79787 1.90969 1.69368 1.29734 1.52642 0.90374 0.89401 0.88669 0.81349 0.83108 0.76085 0.91197 0.91142 0.86895 0.86347 0.91828 0.85394 0.87340 0.81954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 10.34 59.85 0.62 0.89 16 2 N -0.50 -3.82 2.98 -127.13 -0.38 -4.20 16 3 C 0.13 0.72 10.25 -16.90 -0.17 0.55 16 4 C -0.21 -1.50 9.51 -39.54 -0.38 -1.87 16 5 C -0.03 -0.31 5.91 -104.56 -0.62 -0.93 16 6 C 0.55 6.86 7.80 -12.05 -0.09 6.77 16 7 O -0.53 -8.52 16.39 5.39 0.09 -8.43 16 8 N -0.71 -7.96 5.51 -62.23 -0.34 -8.31 16 9 C 0.18 2.27 5.80 -5.19 -0.03 2.24 16 10 C -0.22 -3.21 5.25 -104.58 -0.55 -3.76 16 11 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 12 C -0.20 -3.72 9.99 -39.39 -0.39 -4.11 16 13 C 0.16 3.56 6.65 -39.11 -0.26 3.30 16 14 O -0.17 -4.61 9.76 0.04 0.00 -4.61 16 15 C -0.39 -10.37 9.49 30.88 0.29 -10.08 16 16 H 0.09 2.25 5.20 -52.48 -0.27 1.98 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -24.04 13.67 55.48 0.76 -23.28 16 19 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 C -0.24 -4.65 9.17 -39.40 -0.36 -5.01 16 24 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 25 C -0.17 -2.00 9.61 -38.53 -0.37 -2.37 16 26 C 0.51 5.93 7.42 -15.31 -0.11 5.82 16 27 O -0.55 -8.09 16.62 4.91 0.08 -8.01 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.14 8.00 -51.93 -0.42 -0.28 16 30 H 0.09 0.58 7.37 -51.93 -0.38 0.20 16 31 H 0.17 0.24 8.02 -52.48 -0.42 -0.18 16 32 H 0.15 0.77 6.50 -52.49 -0.34 0.43 16 33 H 0.40 3.76 6.57 -40.82 -0.27 3.50 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.13 2.54 5.64 -52.48 -0.30 2.24 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.16 2.02 7.69 -52.49 -0.40 1.61 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -34.14 359.64 -7.15 -41.29 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.47 Total: 5.72 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.29 Total: -10.01 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.04 Total: -35.79 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.06 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.14 -7.15 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067928127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.894 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds