Wall clock time and date at job start Tue Mar 31 2020 16:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35704 * 119.44052 * 2 1 4 4 C 1.35267 * 121.00205 * 179.70741 * 3 2 1 5 5 C 1.41141 * 119.86581 * 0.52669 * 4 3 2 6 6 C 1.48464 * 120.53743 * 179.76379 * 5 4 3 7 7 O 1.21472 * 120.00030 * 179.71910 * 6 5 4 8 8 N 1.34771 * 119.99648 * 359.70917 * 6 5 4 9 9 C 1.46505 * 119.99776 * 179.72622 * 8 6 5 10 10 C 1.50701 * 109.47121 * 180.27695 * 9 8 6 11 11 C 1.38298 * 119.92990 * 269.72896 * 10 9 8 12 12 C 1.38111 * 120.06447 * 179.72591 * 11 10 9 13 13 C 1.38881 * 119.92709 * 0.57231 * 12 11 10 14 14 O 1.35753 * 120.06444 * 179.68139 * 13 12 11 15 15 C 1.34828 * 116.99980 * 174.48247 * 14 13 12 16 16 H 1.08007 * 119.99669 * 5.05772 * 15 14 13 17 17 C 1.38650 * 120.00455 * 185.06005 * 15 14 13 18 18 N 1.31557 * 119.99598 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00379 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47176 * 89.99543 * 19 17 15 21 21 H 1.48492 * 109.46721 * 209.99844 * 19 17 15 22 22 H 1.48495 * 109.46695 * 329.99544 * 19 17 15 23 23 C 1.38877 * 119.86357 * 359.70135 * 13 12 11 24 24 C 1.38096 * 119.93329 * 0.02562 * 23 13 12 25 25 C 1.38299 * 118.92598 * 359.48050 * 5 4 3 26 26 C 1.34597 * 119.44340 * 179.97438 * 2 1 3 27 27 O 1.22011 * 119.96137 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47059 * 270.02245 * 1 2 3 29 29 H 1.08997 * 109.47392 * 30.02792 * 1 2 3 30 30 H 1.09003 * 109.46733 * 150.02982 * 1 2 3 31 31 H 1.08006 * 119.49483 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.06670 * 180.25917 * 4 3 2 33 33 H 0.96998 * 120.00475 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47232 * 300.28185 * 9 8 6 35 35 H 1.09001 * 109.46894 * 60.27844 * 9 8 6 36 36 H 1.07994 * 119.96878 * 359.97438 * 11 10 9 37 37 H 1.07993 * 120.03462 * 180.27464 * 12 11 10 38 38 H 0.97000 * 120.00019 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.03543 * 179.97438 * 23 13 12 40 40 H 1.08004 * 119.96668 * 180.02562 * 24 23 13 41 41 H 1.07996 * 120.49542 * 180.23403 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1818 0.0000 4 6 3.4842 1.2187 0.0059 5 6 4.2201 0.0143 0.0010 6 6 5.7046 0.0374 0.0021 7 8 6.3282 -1.0050 0.0029 8 7 6.3601 1.2150 0.0019 9 6 7.8250 1.2378 0.0091 10 6 8.3051 2.6663 0.0142 11 6 8.5361 3.3209 -1.1819 12 6 8.9707 4.6318 -1.1805 13 6 9.1871 5.2888 0.0238 14 8 9.6205 6.5753 0.0285 15 6 9.7007 7.1898 1.2259 16 1 9.5050 6.6351 2.1317 17 6 10.0344 8.5338 1.2945 18 7 10.2732 9.2093 0.1911 19 14 10.1462 9.3851 2.9535 20 1 11.5312 9.2698 3.4766 21 1 9.7932 10.8191 2.7987 22 1 9.2030 8.7429 3.9038 23 6 8.9596 4.6267 1.2233 24 6 8.5196 3.3178 1.2152 25 6 3.5361 -1.1876 0.0010 26 6 2.1266 -1.1721 0.0005 27 8 1.5056 -2.2224 0.0015 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 1.5747 2.1070 -0.0004 32 1 3.9996 2.1678 0.0101 33 1 5.8621 2.0474 0.0015 34 1 8.1920 0.7279 0.8998 35 1 8.2006 0.7315 -0.8801 36 1 8.3727 2.8078 -2.1180 37 1 9.1467 5.1440 -2.1149 38 1 10.5070 10.1495 0.2390 39 1 9.1273 5.1348 2.1615 40 1 8.3421 2.8025 2.1477 41 1 4.0738 -2.1242 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067928127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:19 Heat of formation + Delta-G solvation = -57.123364 kcal Electronic energy + Delta-G solvation = -25758.927975 eV Core-core repulsion = 21797.357532 eV Total energy + Delta-G solvation = -3961.570442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43963 -41.01692 -40.51855 -38.50509 -38.04412 -35.82802 -35.51425 -34.25586 -31.82592 -31.53692 -30.96419 -29.00888 -27.64328 -26.52775 -24.84445 -24.37623 -23.61725 -22.16468 -21.64902 -19.86135 -19.33324 -18.80994 -18.54198 -17.95815 -17.16038 -16.88656 -16.81811 -16.61218 -16.31430 -15.98271 -15.81152 -15.51314 -15.23492 -15.12386 -14.77540 -14.38521 -14.27900 -14.20688 -14.10897 -13.67536 -13.46499 -13.33031 -13.01522 -12.89444 -12.74051 -12.55163 -12.34618 -12.21712 -12.10082 -11.64342 -11.17325 -11.14087 -11.05128 -10.77935 -10.15224 -9.77974 -9.08573 -8.99381 -8.46301 -6.14261 -0.65812 0.55419 0.61011 0.62973 1.38179 1.45824 1.54783 1.61192 1.71255 2.07557 2.18934 2.63112 2.85436 3.18285 3.50959 3.53082 3.66517 3.71439 3.87287 4.05691 4.08313 4.15282 4.20659 4.42568 4.46403 4.47163 4.59721 4.68176 4.78829 4.81910 4.83337 4.95018 5.06889 5.10315 5.16912 5.29493 5.30064 5.44875 5.55479 5.72171 5.77290 5.93198 6.03832 6.18539 6.45981 6.81700 6.98852 7.06685 7.78324 8.76363 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002138 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.278256 B =13093.621278 C =13962.019479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.489 5.489 3 C 0.160 3.840 4 C -0.224 4.224 5 C -0.017 4.017 6 C 0.550 3.450 7 O -0.570 6.570 8 N -0.696 5.696 9 C 0.181 3.819 10 C -0.183 4.183 11 C -0.041 4.041 12 C -0.204 4.204 13 C 0.123 3.877 14 O -0.229 6.229 15 C -0.412 4.412 16 H 0.105 0.895 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.016 2.984 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.251 1.251 23 C -0.243 4.243 24 C -0.043 4.043 25 C -0.212 4.212 26 C 0.502 3.498 27 O -0.596 6.596 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.226 0.774 32 H 0.179 0.821 33 H 0.416 0.584 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.272 0.728 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.368 -11.161 1.124 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.198 5.198 3 C 0.032 3.968 4 C -0.246 4.246 5 C -0.024 4.024 6 C 0.336 3.664 7 O -0.450 6.450 8 N -0.348 5.348 9 C 0.059 3.941 10 C -0.184 4.184 11 C -0.060 4.060 12 C -0.223 4.223 13 C 0.072 3.928 14 O -0.135 6.135 15 C -0.488 4.488 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.836 3.164 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.174 1.174 23 C -0.262 4.262 24 C -0.062 4.062 25 C -0.235 4.235 26 C 0.305 3.695 27 O -0.483 6.483 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.243 0.757 32 H 0.196 0.804 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.226 -12.179 0.875 21.938 hybrid contribution 0.462 0.806 0.497 1.053 sum -17.764 -11.373 1.372 21.137 Atomic orbital electron populations 1.22521 0.74758 1.06410 1.05338 1.45562 1.11049 1.06479 1.56669 1.22758 0.93467 0.90088 0.90438 1.21039 0.93414 0.98122 1.11983 1.20488 0.92603 0.94797 0.94519 1.18617 0.87496 0.83748 0.76513 1.90770 1.69446 1.33724 1.51096 1.46039 1.07665 1.08298 1.72824 1.19993 0.78764 0.92357 1.02995 1.19422 1.09938 0.96062 0.92952 1.20884 0.94771 0.91774 0.98544 1.20449 1.09911 0.96655 0.95326 1.20012 0.92089 0.85243 0.95419 1.83951 1.74262 1.21716 1.33573 1.21822 1.49483 0.93833 0.83616 0.87817 1.26557 0.95879 0.95969 1.03556 1.70177 1.45602 1.09978 1.29904 0.84607 0.79453 0.77320 0.75018 1.19150 1.19775 1.17397 1.21238 1.10446 0.97198 0.97363 1.20944 0.94570 0.92312 0.98368 1.22471 0.92583 0.99622 1.08854 1.17075 0.88837 0.83568 0.80005 1.90929 1.70091 1.31609 1.55660 0.89172 0.85026 0.90623 0.75729 0.80372 0.74561 0.90709 0.90443 0.83412 0.86733 0.91851 0.86221 0.84232 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 10.34 127.77 1.32 1.62 16 2 N -0.49 -6.08 2.98 -674.31 -2.01 -8.09 16 3 C 0.16 0.90 10.25 83.41 0.86 1.75 16 4 C -0.22 -2.15 9.51 22.30 0.21 -1.93 16 5 C -0.02 -0.31 5.91 -19.82 -0.12 -0.43 16 6 C 0.55 12.56 7.80 86.97 0.68 13.24 16 7 O -0.57 -17.84 16.39 -3.63 -0.06 -17.90 16 8 N -0.70 -12.88 5.51 -469.11 -2.58 -15.46 16 9 C 0.18 3.88 5.80 85.63 0.50 4.38 16 10 C -0.18 -4.65 5.25 -19.83 -0.10 -4.75 16 11 C -0.04 -1.15 9.69 22.25 0.22 -0.93 16 12 C -0.20 -7.62 9.99 22.39 0.22 -7.40 16 13 C 0.12 5.54 6.65 22.58 0.15 5.69 16 14 O -0.23 -12.88 9.76 -22.76 -0.22 -13.10 16 15 C -0.41 -22.50 9.49 67.92 0.64 -21.85 16 16 H 0.10 5.14 5.20 -2.91 -0.02 5.13 16 17 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 18 N -0.92 -54.07 13.67 21.61 0.30 -53.77 16 19 Si 1.02 40.52 29.55 68.60 2.03 42.55 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 23 C -0.24 -9.31 9.17 22.39 0.21 -9.11 16 24 C -0.04 -1.25 9.69 22.25 0.22 -1.04 16 25 C -0.21 -5.01 9.61 22.95 0.22 -4.79 16 26 C 0.50 11.60 7.42 84.93 0.63 12.23 16 27 O -0.60 -18.58 16.62 -5.35 -0.09 -18.67 16 28 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.13 -0.33 8.00 -2.39 -0.02 -0.34 16 30 H 0.07 0.83 7.37 -2.39 -0.02 0.81 16 31 H 0.23 -1.18 8.02 -2.91 -0.02 -1.21 16 32 H 0.18 0.74 6.50 -2.91 -0.02 0.72 16 33 H 0.42 5.69 6.57 -92.71 -0.61 5.08 16 34 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.12 4.73 5.64 -2.91 -0.02 4.72 16 40 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.14 3.80 7.69 -2.91 -0.02 3.78 16 Total: -1.00 -83.53 359.64 4.15 -79.38 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.48 Total: 19.09 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 6.31 Total: -14.03 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -4.30 Total: -77.32 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.37 Total: -49.67 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -83.53 4.15 -79.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067928127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.259 kcal (2) G-P(sol) polarization free energy of solvation -83.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds