Wall clock time and date at job start Tue Mar 31 2020 16:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47233 * 2 1 4 4 C 1.36874 * 120.00227 * 282.52043 * 3 2 1 5 5 H 1.08003 * 119.99905 * 140.50301 * 4 3 2 6 6 C 1.39050 * 119.99859 * 320.50373 * 4 3 2 7 7 N 1.31358 * 119.99735 * 161.50853 * 6 4 3 8 8 Si 1.86804 * 119.99925 * 341.50826 * 6 4 3 9 9 H 1.48497 * 109.47016 * 89.61235 * 8 6 4 10 10 H 1.48496 * 109.46937 * 209.61599 * 8 6 4 11 11 H 1.48504 * 109.46885 * 329.61488 * 8 6 4 12 12 C 1.34778 * 119.99894 * 102.51694 * 3 2 1 13 13 O 1.21595 * 119.99779 * 176.60791 * 12 3 2 14 14 C 1.47734 * 120.00030 * 356.60404 * 12 3 2 15 15 C 1.39692 * 120.11672 * 321.63295 * 14 12 3 16 16 C 1.37966 * 119.99533 * 180.02562 * 15 14 12 17 17 C 1.38268 * 120.23028 * 359.73669 * 16 15 14 18 18 C 1.38982 * 120.23130 * 0.53942 * 17 16 15 19 19 N 1.39867 * 119.99738 * 179.72616 * 18 17 16 20 20 C 1.34778 * 119.99877 * 215.80830 * 19 18 17 21 21 O 1.21704 * 120.00416 * 355.58661 * 20 19 18 22 22 C 1.46624 * 119.99532 * 175.58209 * 20 19 18 23 23 C 1.36566 * 125.98601 * 179.71414 * 22 20 19 24 24 C 1.40365 * 106.70465 * 179.88854 * 23 22 20 25 25 C 1.35128 * 107.11584 * 0.37770 * 24 23 22 26 26 O 1.33934 * 108.77084 * 359.76542 * 25 24 23 27 27 C 1.38643 * 120.00672 * 359.45793 * 18 17 16 28 28 H 1.08999 * 109.47227 * 197.40449 * 1 2 3 29 29 H 1.08997 * 109.47594 * 317.40861 * 1 2 3 30 30 H 1.09004 * 109.47127 * 77.40734 * 1 2 3 31 31 H 1.09001 * 109.47675 * 239.99971 * 2 1 3 32 32 H 1.09000 * 109.47632 * 120.00360 * 2 1 3 33 33 H 0.97006 * 119.99673 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.00375 * 0.02562 * 15 14 12 35 35 H 1.07996 * 119.88307 * 180.02562 * 16 15 14 36 36 H 1.08000 * 119.88015 * 180.27668 * 17 16 15 37 37 H 0.96994 * 119.99719 * 36.09103 * 19 18 17 38 38 H 1.07999 * 126.64512 * 0.02562 * 23 22 20 39 39 H 1.07999 * 126.43456 * 180.14461 * 24 23 22 40 40 H 1.08003 * 125.61242 * 179.74595 * 25 24 23 41 41 H 1.08002 * 120.11583 * 180.24611 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0042 2.1121 -1.1572 5 1 1.7332 3.1573 -1.1324 6 6 2.3387 1.5090 -2.3646 7 7 1.9880 2.0711 -3.4988 8 14 3.2868 -0.1005 -2.3735 9 1 2.3320 -1.2375 -2.3456 10 1 4.1155 -0.1800 -3.6031 11 1 4.1664 -0.1635 -1.1787 12 6 2.4814 1.9322 1.1395 13 8 2.9438 3.0568 1.1269 14 6 2.4273 1.1699 2.4038 15 6 1.3248 0.3603 2.6875 16 6 1.2766 -0.3501 3.8692 17 6 2.3193 -0.2684 4.7736 18 6 3.4181 0.5386 4.5036 19 7 4.4675 0.6221 5.4246 20 6 5.1167 1.7897 5.6025 21 8 4.8443 2.7498 4.9059 22 6 6.1510 1.9034 6.6355 23 6 6.8854 3.0200 6.9163 24 6 7.7476 2.6812 7.9708 25 6 7.5108 1.3867 8.2780 26 8 6.5481 0.9216 7.4713 27 6 3.4767 1.2566 3.3191 28 1 -0.3634 -0.9806 0.3074 29 1 -0.3634 0.7565 0.6954 30 1 -0.3633 0.2241 -1.0030 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2217 1.6505 -4.3411 34 1 0.5102 0.2904 1.9818 35 1 0.4236 -0.9758 4.0865 36 1 2.2777 -0.8304 5.6949 37 1 4.7307 -0.1615 5.9321 38 1 6.8148 3.9786 6.4239 39 1 8.4678 3.3316 8.4447 40 1 8.0149 0.8205 9.0471 41 1 4.3316 1.8812 3.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:47 Heat of formation + Delta-G solvation = 13.743785 kcal Electronic energy + Delta-G solvation = -27243.705877 eV Core-core repulsion = 23285.208465 eV Total energy + Delta-G solvation = -3958.497412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -43.02163 -40.52107 -39.28913 -37.60170 -35.30846 -34.89922 -33.39644 -32.34894 -30.85143 -30.72883 -29.92119 -28.95693 -25.50159 -24.28519 -23.10327 -22.65752 -22.26419 -21.85888 -20.43754 -19.61746 -18.72079 -17.29420 -16.85138 -16.73185 -16.67841 -16.45321 -15.67160 -15.50159 -15.05389 -14.82645 -14.25264 -14.05665 -13.65593 -13.47779 -13.38696 -13.31959 -13.21430 -13.01024 -12.72858 -12.50772 -12.31263 -11.93277 -11.74092 -11.49887 -10.99818 -10.96029 -10.83342 -10.50478 -10.41425 -10.13865 -10.03493 -9.79212 -9.08657 -9.07396 -8.68126 -8.48618 -8.04843 -7.75035 -6.40171 -3.97436 0.66996 1.28293 1.54855 2.03289 2.31595 2.88542 2.91910 3.02363 3.22119 3.27539 3.62364 4.12442 4.14613 4.33407 4.46149 4.55471 4.67835 4.93562 5.07031 5.10786 5.27403 5.33462 5.41974 5.46721 5.53377 5.58557 5.64214 5.68917 5.89753 5.95152 5.96596 6.07672 6.23325 6.26665 6.41739 6.44770 6.50198 6.54985 6.74499 6.85534 7.11794 7.19296 7.56187 7.83823 8.28485 8.52603 8.95627 9.29328 9.78306 10.71463 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003093 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.855290 B = 9051.697571 C = 9728.591127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 N -0.455 5.455 4 C -0.307 4.307 5 H 0.107 0.893 6 C 0.062 3.938 7 N -0.862 5.862 8 Si 0.881 3.119 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.265 1.265 12 C 0.496 3.504 13 O -0.553 6.553 14 C -0.084 4.084 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.137 4.137 18 C 0.127 3.873 19 N -0.662 5.662 20 C 0.597 3.403 21 O -0.484 6.484 22 C -0.078 4.078 23 C -0.115 4.115 24 C -0.224 4.224 25 C -0.007 4.007 26 O -0.166 6.166 27 C -0.076 4.076 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.275 0.725 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.413 0.587 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.211 0.789 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 -9.933 22.963 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.050 4.050 3 N -0.176 5.176 4 C -0.434 4.434 5 H 0.124 0.876 6 C -0.145 4.145 7 N -0.498 5.498 8 Si 0.709 3.291 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.189 1.189 12 C 0.285 3.715 13 O -0.434 6.434 14 C -0.088 4.088 15 C -0.144 4.144 16 C -0.129 4.129 17 C -0.157 4.157 18 C 0.034 3.966 19 N -0.307 5.307 20 C 0.384 3.616 21 O -0.358 6.358 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.243 4.243 25 C -0.077 4.077 26 O -0.061 6.061 27 C -0.097 4.097 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.249 0.751 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.228 0.772 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.754 -8.915 22.210 24.615 hybrid contribution 0.842 -1.162 0.247 1.456 sum 6.597 -10.077 22.457 25.483 Atomic orbital electron populations 1.22165 0.95966 1.00580 1.03390 1.22134 0.95097 0.85944 1.01824 1.43705 1.53924 1.11381 1.08585 1.19056 1.45340 0.97124 0.81897 0.87580 1.25392 0.95790 0.98306 0.94993 1.69690 1.42151 1.40218 0.97712 0.86941 0.80829 0.83152 0.78154 1.19822 1.21489 1.18929 1.18200 0.81826 0.87843 0.83633 1.90687 1.47593 1.19471 1.85684 1.20288 0.94956 0.97542 0.96017 1.22117 0.98874 0.95648 0.97746 1.20841 0.98108 1.00125 0.93780 1.20885 0.92817 1.01733 1.00303 1.17509 0.88744 1.00754 0.89584 1.43212 1.33621 1.12496 1.41385 1.16649 0.79981 0.83292 0.81710 1.91025 1.63196 1.37535 1.44067 1.21964 1.03698 0.88918 0.98410 1.22072 0.94831 0.99320 0.97314 1.21902 1.04493 0.96738 1.01198 1.24428 0.91567 0.95455 0.96210 1.84047 1.44734 1.38438 1.38927 1.21285 0.99714 0.98316 0.90354 0.92605 0.91890 0.91220 0.91909 0.90586 0.91479 0.83585 0.85378 0.85848 0.75073 0.81887 0.82431 0.77232 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.71 37.15 0.32 -2.47 16 2 C 0.07 1.49 4.70 -4.05 -0.02 1.47 16 3 N -0.46 -11.43 2.19 -115.92 -0.25 -11.68 16 4 C -0.31 -8.84 9.19 -15.00 -0.14 -8.98 16 5 H 0.11 3.42 7.98 -52.48 -0.42 3.01 16 6 C 0.06 1.72 5.38 -17.45 -0.09 1.63 16 7 N -0.86 -25.02 13.95 55.50 0.77 -24.25 16 8 Si 0.88 21.05 25.10 -169.99 -4.27 16.79 16 9 H -0.27 -5.91 6.52 56.52 0.37 -5.54 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.50 12.62 7.29 -12.38 -0.09 12.53 16 13 O -0.55 -16.41 16.81 5.28 0.09 -16.32 16 14 C -0.08 -1.71 5.13 -104.99 -0.54 -2.25 16 15 C -0.13 -2.03 7.43 -39.14 -0.29 -2.33 16 16 C -0.11 -1.40 10.02 -39.67 -0.40 -1.80 16 17 C -0.14 -1.69 9.96 -39.29 -0.39 -2.08 16 18 C 0.13 1.91 6.27 -83.77 -0.53 1.38 16 19 N -0.66 -8.25 5.32 -11.09 -0.06 -8.31 16 20 C 0.60 8.61 7.62 -12.88 -0.10 8.51 16 21 O -0.48 -9.09 14.36 5.19 0.07 -9.01 16 22 C -0.08 -0.91 7.13 -36.80 -0.26 -1.17 16 23 C -0.11 -1.22 10.62 -39.39 -0.42 -1.64 16 24 C -0.22 -1.69 10.87 -39.89 -0.43 -2.13 16 25 C -0.01 -0.04 12.08 29.63 0.36 0.31 16 26 O -0.17 -1.51 10.41 5.00 0.05 -1.46 16 27 C -0.08 -1.47 8.26 -38.95 -0.32 -1.79 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.06 6.65 -51.93 -0.35 0.72 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.35 2.62 -51.93 -0.14 1.22 16 32 H 0.08 1.37 5.11 -51.93 -0.27 1.10 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.15 2.27 3.43 -52.49 -0.18 2.09 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.41 3.65 8.58 -40.82 -0.35 3.30 16 38 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.21 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.14 3.14 6.28 -52.49 -0.33 2.81 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -36.45 345.08 -5.88 -42.33 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.15 Total: 7.51 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.34 Total: -0.79 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.46 Total: -44.24 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.22 Total: -26.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.27 Total: 16.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.45 -5.88 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.071 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds