Wall clock time and date at job start Tue Mar 31 2020 16:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47233 * 2 1 4 4 C 1.36874 * 120.00227 * 282.52043 * 3 2 1 5 5 H 1.08003 * 119.99905 * 140.50301 * 4 3 2 6 6 C 1.39050 * 119.99859 * 320.50373 * 4 3 2 7 7 N 1.31358 * 119.99735 * 161.50853 * 6 4 3 8 8 Si 1.86804 * 119.99925 * 341.50826 * 6 4 3 9 9 H 1.48497 * 109.47016 * 89.61235 * 8 6 4 10 10 H 1.48496 * 109.46937 * 209.61599 * 8 6 4 11 11 H 1.48504 * 109.46885 * 329.61488 * 8 6 4 12 12 C 1.34778 * 119.99894 * 102.51694 * 3 2 1 13 13 O 1.21595 * 119.99779 * 176.60791 * 12 3 2 14 14 C 1.47734 * 120.00030 * 356.60404 * 12 3 2 15 15 C 1.39692 * 120.11672 * 321.63295 * 14 12 3 16 16 C 1.37966 * 119.99533 * 180.02562 * 15 14 12 17 17 C 1.38268 * 120.23028 * 359.73669 * 16 15 14 18 18 C 1.38982 * 120.23130 * 0.53942 * 17 16 15 19 19 N 1.39867 * 119.99738 * 179.72616 * 18 17 16 20 20 C 1.34778 * 119.99877 * 215.80830 * 19 18 17 21 21 O 1.21704 * 120.00416 * 355.58661 * 20 19 18 22 22 C 1.46624 * 119.99532 * 175.58209 * 20 19 18 23 23 C 1.36566 * 125.98601 * 179.71414 * 22 20 19 24 24 C 1.40365 * 106.70465 * 179.88854 * 23 22 20 25 25 C 1.35128 * 107.11584 * 0.37770 * 24 23 22 26 26 O 1.33934 * 108.77084 * 359.76542 * 25 24 23 27 27 C 1.38643 * 120.00672 * 359.45793 * 18 17 16 28 28 H 1.08999 * 109.47227 * 197.40449 * 1 2 3 29 29 H 1.08997 * 109.47594 * 317.40861 * 1 2 3 30 30 H 1.09004 * 109.47127 * 77.40734 * 1 2 3 31 31 H 1.09001 * 109.47675 * 239.99971 * 2 1 3 32 32 H 1.09000 * 109.47632 * 120.00360 * 2 1 3 33 33 H 0.97006 * 119.99673 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.00375 * 0.02562 * 15 14 12 35 35 H 1.07996 * 119.88307 * 180.02562 * 16 15 14 36 36 H 1.08000 * 119.88015 * 180.27668 * 17 16 15 37 37 H 0.96994 * 119.99719 * 36.09103 * 19 18 17 38 38 H 1.07999 * 126.64512 * 0.02562 * 23 22 20 39 39 H 1.07999 * 126.43456 * 180.14461 * 24 23 22 40 40 H 1.08003 * 125.61242 * 179.74595 * 25 24 23 41 41 H 1.08002 * 120.11583 * 180.24611 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0042 2.1121 -1.1572 5 1 1.7332 3.1573 -1.1324 6 6 2.3387 1.5090 -2.3646 7 7 1.9880 2.0711 -3.4988 8 14 3.2868 -0.1005 -2.3735 9 1 2.3320 -1.2375 -2.3456 10 1 4.1155 -0.1800 -3.6031 11 1 4.1664 -0.1635 -1.1787 12 6 2.4814 1.9322 1.1395 13 8 2.9438 3.0568 1.1269 14 6 2.4273 1.1699 2.4038 15 6 1.3248 0.3603 2.6875 16 6 1.2766 -0.3501 3.8692 17 6 2.3193 -0.2684 4.7736 18 6 3.4181 0.5386 4.5036 19 7 4.4675 0.6221 5.4246 20 6 5.1167 1.7897 5.6025 21 8 4.8443 2.7498 4.9059 22 6 6.1510 1.9034 6.6355 23 6 6.8854 3.0200 6.9163 24 6 7.7476 2.6812 7.9708 25 6 7.5108 1.3867 8.2780 26 8 6.5481 0.9216 7.4713 27 6 3.4767 1.2566 3.3191 28 1 -0.3634 -0.9806 0.3074 29 1 -0.3634 0.7565 0.6954 30 1 -0.3633 0.2241 -1.0030 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2217 1.6505 -4.3411 34 1 0.5102 0.2904 1.9818 35 1 0.4236 -0.9758 4.0865 36 1 2.2777 -0.8304 5.6949 37 1 4.7307 -0.1615 5.9321 38 1 6.8148 3.9786 6.4239 39 1 8.4678 3.3316 8.4447 40 1 8.0149 0.8205 9.0471 41 1 4.3316 1.8812 3.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:46 Heat of formation + Delta-G solvation = -14.066536 kcal Electronic energy + Delta-G solvation = -27244.911823 eV Core-core repulsion = 23285.208465 eV Total energy + Delta-G solvation = -3959.703358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.72227 -41.78406 -40.86668 -39.02879 -37.27575 -36.10998 -34.41112 -34.09723 -32.10143 -31.95616 -31.43481 -30.01185 -27.44270 -25.28887 -24.68525 -24.22112 -23.15843 -22.70445 -21.38067 -21.20685 -19.71985 -18.99704 -18.61997 -18.13035 -17.47427 -17.40947 -17.22289 -17.03618 -16.29925 -15.96332 -15.93746 -15.53615 -15.26569 -14.88961 -14.63882 -14.50194 -14.21238 -14.16847 -14.01450 -13.87491 -13.61940 -13.54629 -13.27851 -12.83299 -12.76191 -12.64180 -12.25671 -12.08177 -11.83174 -11.51710 -11.28659 -11.11294 -11.05128 -10.54217 -9.95087 -9.81449 -9.78837 -9.22550 -8.57714 -6.22388 -0.24217 0.03477 0.37378 1.10819 1.26055 1.37343 1.37432 1.48144 1.84554 1.97444 2.06709 2.11032 2.55217 2.81020 2.91721 3.57287 3.72571 3.88952 3.95197 3.98667 4.05636 4.13214 4.25660 4.39402 4.42635 4.45809 4.48275 4.55271 4.84011 4.86851 4.90174 4.93396 4.95536 5.17549 5.23137 5.29889 5.35695 5.44624 5.49169 5.52394 5.75287 5.93354 5.96744 6.24142 6.50660 6.83920 6.84138 7.17610 7.76124 8.59378 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003093 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.855290 B = 9051.697571 C = 9728.591127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.066 3.934 3 N -0.462 5.462 4 C -0.330 4.330 5 H 0.043 0.957 6 C 0.018 3.982 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.222 1.222 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.486 3.514 13 O -0.621 6.621 14 C -0.117 4.117 15 C -0.124 4.124 16 C -0.088 4.088 17 C -0.106 4.106 18 C 0.127 3.873 19 N -0.646 5.646 20 C 0.593 3.407 21 O -0.545 6.545 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.237 4.237 25 C 0.024 3.976 26 O -0.164 6.164 27 C -0.103 4.103 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.283 0.717 34 H 0.155 0.845 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.433 0.567 38 H 0.150 0.850 39 H 0.184 0.816 40 H 0.264 0.736 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -15.726 27.371 32.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.055 4.055 3 N -0.182 5.182 4 C -0.459 4.459 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.542 5.542 8 Si 0.772 3.228 9 H -0.146 1.146 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.277 3.723 13 O -0.507 6.507 14 C -0.121 4.121 15 C -0.142 4.142 16 C -0.106 4.106 17 C -0.126 4.126 18 C 0.033 3.967 19 N -0.292 5.292 20 C 0.383 3.617 21 O -0.423 6.423 22 C -0.160 4.160 23 C -0.146 4.146 24 C -0.255 4.255 25 C -0.045 4.045 26 O -0.059 6.059 27 C -0.124 4.124 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.172 0.828 35 H 0.202 0.798 36 H 0.196 0.804 37 H 0.274 0.726 38 H 0.167 0.833 39 H 0.202 0.798 40 H 0.280 0.720 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.508 -14.792 26.637 30.963 hybrid contribution 0.988 0.717 -0.884 1.507 sum 6.497 -14.076 25.753 30.059 Atomic orbital electron populations 1.22143 0.93286 1.03684 1.02309 1.22457 0.97377 0.82829 1.02853 1.43820 1.54126 1.13044 1.07193 1.18619 1.47419 0.95449 0.84364 0.93903 1.26137 0.95816 1.02694 0.93852 1.69795 1.43206 1.42593 0.98558 0.85895 0.79643 0.79708 0.77578 1.14649 1.21054 1.20026 1.19187 0.80092 0.87372 0.85614 1.90617 1.50290 1.22663 1.87151 1.19859 0.97946 1.00166 0.94140 1.22242 0.97174 0.95054 0.99775 1.21424 0.99378 0.98458 0.91304 1.21498 0.90354 0.99164 1.01579 1.17627 0.90458 1.00330 0.88292 1.43083 1.32800 1.12760 1.40572 1.17041 0.80117 0.82968 0.81582 1.91010 1.65245 1.39580 1.46499 1.21372 1.04734 0.90115 0.99789 1.22300 0.95376 0.98783 0.98119 1.22234 1.04739 0.98001 1.00542 1.25501 0.89006 0.95224 0.94784 1.84040 1.45443 1.37606 1.38805 1.21055 0.98785 0.99823 0.92751 0.87055 0.92081 0.93489 0.92633 0.87495 0.90742 0.82791 0.79839 0.80416 0.72615 0.83257 0.79841 0.72040 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.71 71.98 0.63 -4.42 16 2 C 0.07 2.63 4.70 86.38 0.41 3.03 16 3 N -0.46 -24.51 2.19 -638.93 -1.40 -25.91 16 4 C -0.33 -20.68 9.19 84.10 0.77 -19.91 16 5 H 0.04 3.13 7.98 -2.91 -0.02 3.11 16 6 C 0.02 1.06 5.38 84.96 0.46 1.52 16 7 N -0.90 -55.35 13.95 21.68 0.30 -55.05 16 8 Si 0.95 44.06 25.10 68.60 1.72 45.78 16 9 H -0.22 -8.62 6.52 99.48 0.65 -7.97 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.49 26.78 7.29 86.75 0.63 27.41 16 13 O -0.62 -41.24 16.81 -4.02 -0.07 -41.31 16 14 C -0.12 -4.94 5.13 -20.11 -0.10 -5.04 16 15 C -0.12 -3.70 7.43 22.56 0.17 -3.53 16 16 C -0.09 -1.70 10.02 22.21 0.22 -1.47 16 17 C -0.11 -2.01 9.96 22.46 0.22 -1.79 16 18 C 0.13 3.60 6.27 38.13 0.24 3.84 16 19 N -0.65 -15.28 5.32 -307.21 -1.64 -16.92 16 20 C 0.59 17.84 7.62 86.43 0.66 18.50 16 21 O -0.54 -22.58 14.36 -4.36 -0.06 -22.64 16 22 C -0.11 -2.51 7.13 24.07 0.17 -2.34 16 23 C -0.12 -2.69 10.62 22.40 0.24 -2.45 16 24 C -0.24 -2.99 10.87 22.07 0.24 -2.75 16 25 C 0.02 0.21 12.08 67.10 0.81 1.02 16 26 O -0.16 -2.53 10.41 -5.02 -0.05 -2.58 16 27 C -0.10 -4.18 8.26 22.68 0.19 -3.99 16 28 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.99 6.65 -2.39 -0.02 1.97 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.28 2.62 -2.39 -0.01 2.27 16 32 H 0.11 3.56 5.11 -2.39 -0.01 3.55 16 33 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 34 H 0.15 4.31 3.43 -2.91 -0.01 4.30 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.43 6.31 8.58 -92.71 -0.80 5.51 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.26 -0.69 8.06 -2.91 -0.02 -0.71 16 41 H 0.10 4.89 6.28 -2.91 -0.02 4.87 16 Total: -1.00 -96.81 345.08 5.01 -91.80 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.25 Total: 19.20 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.95 Total: 7.63 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.73 Total: -97.88 kcal Atomic # 8 Polarization: -66.35 SS G_CDS: -0.18 Total: -66.53 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.72 Total: 45.78 kcal Total: -96.81 5.01 -91.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.736 kcal (2) G-P(sol) polarization free energy of solvation -96.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds