Wall clock time and date at job start Tue Mar 31 2020 16:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35953 * 116.99979 * 2 1 4 4 C 1.38050 * 119.99946 * 0.20934 * 3 2 1 5 5 C 1.40026 * 119.83693 * 180.22892 * 4 3 2 6 6 C 1.46883 * 120.08147 * 179.81196 * 5 4 3 7 7 C 1.35193 * 119.99870 * 179.72696 * 6 5 4 8 8 C 1.46166 * 120.00322 * 180.02562 * 7 6 5 9 9 O 1.21802 * 119.99278 * 359.97438 * 8 7 6 10 10 C 1.47581 * 120.00534 * 179.72694 * 8 7 6 11 11 C 1.41275 * 126.41142 * 0.29452 * 10 8 7 12 12 N 1.30456 * 108.04029 * 179.97438 * 11 10 8 13 13 N 1.39929 * 108.90373 * 0.02562 * 12 11 10 14 14 C 1.46505 * 125.75732 * 180.02562 * 13 12 11 15 15 C 1.34327 * 108.48125 * 359.75110 * 13 12 11 16 16 C 1.40087 * 119.83322 * 359.54209 * 5 4 3 17 17 C 1.37610 * 119.99790 * 0.25162 * 16 5 4 18 18 C 1.39088 * 120.16854 * 359.97438 * 17 16 5 19 19 O 1.35592 * 119.92000 * 180.02562 * 18 17 16 20 20 C 1.34743 * 117.00220 * 354.37474 * 19 18 17 21 21 H 1.08002 * 119.99930 * 5.06276 * 20 19 18 22 22 C 1.38727 * 120.00205 * 185.06898 * 20 19 18 23 23 N 1.31504 * 120.00258 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00032 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47176 * 59.99899 * 24 22 20 26 26 H 1.48504 * 109.47176 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47106 * 299.99714 * 24 22 20 28 28 H 1.09005 * 109.47366 * 300.00182 * 1 2 3 29 29 H 1.08992 * 109.47899 * 60.00111 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.08211 * 0.05058 * 4 3 2 32 32 H 1.07991 * 120.00049 * 359.73276 * 6 5 4 33 33 H 1.08001 * 120.00093 * 359.97438 * 7 6 5 34 34 H 1.08004 * 125.97547 * 359.95626 * 11 10 8 35 35 H 1.09005 * 109.47076 * 89.97302 * 14 13 12 36 36 H 1.09001 * 109.46913 * 209.97126 * 14 13 12 37 37 H 1.09002 * 109.47168 * 329.97126 * 14 13 12 38 38 H 1.08000 * 126.30177 * 180.25292 * 15 13 12 39 39 H 1.08001 * 119.99819 * 180.22683 * 16 5 4 40 40 H 1.08001 * 119.91886 * 179.97438 * 17 16 5 41 41 H 0.96994 * 120.00233 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2942 2.3691 0.0044 5 6 1.9335 3.6150 -0.0005 6 6 1.1387 4.8502 -0.0001 7 6 1.7576 6.0521 0.0008 8 6 0.9668 7.2814 0.0018 9 8 -0.2498 7.2228 0.0014 10 6 1.6424 8.5935 0.0089 11 6 3.0371 8.8187 0.0093 12 7 3.2382 10.1076 0.0159 13 7 2.0002 10.7596 0.0206 14 6 1.7967 12.2105 0.0280 15 6 1.0298 9.8309 0.0111 16 6 3.3328 3.6803 -0.0001 17 6 4.0756 2.5219 -0.0001 18 6 3.4407 1.2844 0.0000 19 8 4.1776 0.1462 0.0005 20 6 5.5130 0.2819 -0.1168 21 1 5.9572 1.2663 -0.1234 22 6 6.3173 -0.8428 -0.2293 23 7 5.7766 -2.0415 -0.2209 24 14 8.1687 -0.6546 -0.3926 25 1 8.7018 0.0499 0.8010 26 1 8.7956 -1.9969 -0.4956 27 1 8.4805 0.1328 -1.6125 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2157 2.3141 0.0086 32 1 0.0601 4.7983 -0.0003 33 1 2.8364 6.1041 0.0016 34 1 3.8027 8.0569 0.0051 35 1 1.7455 12.5754 -0.9978 36 1 0.8652 12.4441 0.5437 37 1 2.6280 12.6913 0.5437 38 1 -0.0340 10.0176 0.0079 39 1 3.8286 4.6398 -0.0001 40 1 5.1544 2.5737 -0.0002 41 1 6.3390 -2.8278 -0.2992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068395782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:37 Heat of formation + Delta-G solvation = 26.128927 kcal Electronic energy + Delta-G solvation = -25710.719640 eV Core-core repulsion = 21752.759288 eV Total energy + Delta-G solvation = -3957.960352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 5.33 seconds Orbital eigenvalues (eV) -41.46497 -39.71870 -38.64294 -37.67605 -36.51107 -33.73481 -32.99439 -32.22797 -30.58567 -29.74293 -28.85070 -27.54715 -26.48368 -25.55781 -24.05703 -22.26946 -21.68382 -21.22086 -20.18633 -18.71268 -18.19830 -17.81113 -17.22809 -16.13847 -15.87278 -15.68074 -15.26186 -15.20271 -14.81098 -14.64036 -14.62168 -14.06319 -13.98368 -13.68422 -13.59282 -13.44754 -13.23673 -12.91072 -12.89962 -12.39350 -12.08941 -11.79739 -11.69816 -11.45756 -11.15995 -11.08732 -10.99572 -10.77774 -10.70208 -10.51051 -9.81946 -9.62939 -9.54128 -9.38525 -8.89789 -8.79416 -7.97670 -6.90076 -6.62101 -4.12771 0.75033 1.49226 2.03630 2.11529 2.13899 2.75277 3.05673 3.08471 3.10025 3.70390 3.83346 3.94266 4.04166 4.47785 4.48539 4.55272 4.70032 4.86726 4.90390 4.96763 5.01234 5.18883 5.28233 5.29321 5.40811 5.53851 5.54691 5.61023 5.72267 5.82948 5.89645 6.01724 6.21241 6.24379 6.46190 6.54093 6.55145 6.62532 6.88076 7.02701 7.09207 7.27569 7.32691 7.47942 7.78443 7.90546 8.08136 8.80829 9.49771 10.53534 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.002447 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.759794 B =11439.945494 C =13446.030074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.136 4.136 5 C -0.169 4.169 6 C 0.034 3.966 7 C -0.287 4.287 8 C 0.462 3.538 9 O -0.497 6.497 10 C -0.304 4.304 11 C 0.094 3.906 12 N -0.304 5.304 13 N -0.369 5.369 14 C 0.097 3.903 15 C 0.116 3.884 16 C -0.057 4.057 17 C -0.226 4.226 18 C 0.149 3.851 19 O -0.146 6.146 20 C -0.391 4.391 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.844 5.844 24 Si 0.945 3.055 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.267 1.267 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.194 0.806 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.185 0.815 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 20.023 0.325 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.170 4.170 6 C 0.015 3.985 7 C -0.306 4.306 8 C 0.347 3.653 9 O -0.379 6.379 10 C -0.317 4.317 11 C -0.093 4.093 12 N -0.124 5.124 13 N -0.148 5.148 14 C -0.044 4.044 15 C -0.034 4.034 16 C -0.075 4.075 17 C -0.245 4.245 18 C 0.092 3.908 19 O -0.047 6.047 20 C -0.466 4.466 21 H 0.115 0.885 22 C -0.166 4.166 23 N -0.476 5.476 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.211 0.789 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.202 0.798 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.280 20.370 0.338 21.634 hybrid contribution 0.165 -0.277 -0.092 0.336 sum -7.115 20.092 0.246 21.316 Atomic orbital electron populations 1.22912 0.80193 1.03055 1.00408 1.86233 1.19556 1.26222 1.89736 1.18045 0.89372 0.84610 1.07401 1.20893 0.98575 0.90956 1.05107 1.18199 0.92842 0.91441 1.14532 1.22369 0.99046 0.91299 0.85790 1.22934 1.00546 0.92359 1.14771 1.19385 0.87561 0.87206 0.71185 1.90607 1.16028 1.89867 1.41389 1.21021 0.93897 0.94917 1.21838 1.24202 0.95865 0.93404 0.95863 1.77205 1.02425 1.07416 1.25377 1.48479 1.04179 1.07023 1.55084 1.21968 1.03942 0.74692 1.03796 1.23137 0.95833 0.88410 0.96065 1.20961 0.92493 0.97423 0.96627 1.20836 1.00735 0.90739 1.12199 1.18903 0.88267 0.87647 0.96012 1.83975 1.19728 1.25922 1.75029 1.21487 0.78380 0.95086 1.51634 0.88501 1.25421 1.00929 0.94137 0.96065 1.70027 1.36818 0.97848 1.42894 0.85714 0.79731 0.78218 0.79463 1.19206 1.20094 1.19191 0.93466 0.93437 0.88988 0.85883 0.86152 0.85585 0.78899 0.90320 0.89150 0.88897 0.79786 0.86437 0.84486 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.44 10.28 -34.20 -0.35 -6.79 16 3 C 0.05 1.08 6.70 -39.12 -0.26 0.82 16 4 C -0.14 -2.43 8.78 -38.98 -0.34 -2.77 16 5 C -0.17 -2.89 5.87 -105.04 -0.62 -3.51 16 6 C 0.03 0.51 9.45 -37.17 -0.35 0.16 16 7 C -0.29 -3.94 9.07 -37.49 -0.34 -4.28 16 8 C 0.46 6.49 7.08 -32.59 -0.23 6.26 16 9 O -0.50 -8.14 16.79 5.10 0.09 -8.05 16 10 C -0.30 -3.69 6.11 -104.99 -0.64 -4.33 16 11 C 0.09 1.06 11.48 -16.98 -0.19 0.86 16 12 N -0.30 -3.57 12.50 30.86 0.39 -3.19 16 13 N -0.37 -3.47 3.98 -67.57 -0.27 -3.74 16 14 C 0.10 0.44 11.44 59.85 0.68 1.13 16 15 C 0.12 1.16 11.31 -16.52 -0.19 0.98 16 16 C -0.06 -0.99 9.40 -39.12 -0.37 -1.36 16 17 C -0.23 -4.62 9.14 -39.50 -0.36 -4.99 16 18 C 0.15 3.52 6.67 -38.74 -0.26 3.27 16 19 O -0.15 -4.07 9.52 -13.83 -0.13 -4.21 16 20 C -0.39 -10.42 9.48 30.91 0.29 -10.13 16 21 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 22 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 23 N -0.84 -23.90 13.67 55.48 0.76 -23.14 16 24 Si 0.95 19.48 29.55 -169.99 -5.02 14.45 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 28 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.12 1.84 6.28 -52.49 -0.33 1.51 16 32 H 0.12 1.75 7.52 -52.49 -0.39 1.35 16 33 H 0.13 1.51 5.19 -52.49 -0.27 1.24 16 34 H 0.19 1.68 7.40 -52.48 -0.39 1.30 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.12 1.67 6.15 -52.49 -0.32 1.34 16 40 H 0.14 2.72 5.61 -52.49 -0.29 2.43 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -34.33 362.49 -5.68 -40.01 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.32 Total: 4.65 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.28 Total: -15.47 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.88 Total: -30.06 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.40 Total: -19.05 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.33 -5.68 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068395782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.141 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.34 seconds