Wall clock time and date at job start Tue Mar 31 2020 16:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35953 * 116.99979 * 2 1 4 4 C 1.38050 * 119.99946 * 0.20934 * 3 2 1 5 5 C 1.40026 * 119.83693 * 180.22892 * 4 3 2 6 6 C 1.46883 * 120.08147 * 179.81196 * 5 4 3 7 7 C 1.35193 * 119.99870 * 179.72696 * 6 5 4 8 8 C 1.46166 * 120.00322 * 180.02562 * 7 6 5 9 9 O 1.21802 * 119.99278 * 359.97438 * 8 7 6 10 10 C 1.47581 * 120.00534 * 179.72694 * 8 7 6 11 11 C 1.41275 * 126.41142 * 0.29452 * 10 8 7 12 12 N 1.30456 * 108.04029 * 179.97438 * 11 10 8 13 13 N 1.39929 * 108.90373 * 0.02562 * 12 11 10 14 14 C 1.46505 * 125.75732 * 180.02562 * 13 12 11 15 15 C 1.34327 * 108.48125 * 359.75110 * 13 12 11 16 16 C 1.40087 * 119.83322 * 359.54209 * 5 4 3 17 17 C 1.37610 * 119.99790 * 0.25162 * 16 5 4 18 18 C 1.39088 * 120.16854 * 359.97438 * 17 16 5 19 19 O 1.35592 * 119.92000 * 180.02562 * 18 17 16 20 20 C 1.34743 * 117.00220 * 354.37474 * 19 18 17 21 21 H 1.08002 * 119.99930 * 5.06276 * 20 19 18 22 22 C 1.38727 * 120.00205 * 185.06898 * 20 19 18 23 23 N 1.31504 * 120.00258 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00032 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47176 * 59.99899 * 24 22 20 26 26 H 1.48504 * 109.47176 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47106 * 299.99714 * 24 22 20 28 28 H 1.09005 * 109.47366 * 300.00182 * 1 2 3 29 29 H 1.08992 * 109.47899 * 60.00111 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.08211 * 0.05058 * 4 3 2 32 32 H 1.07991 * 120.00049 * 359.73276 * 6 5 4 33 33 H 1.08001 * 120.00093 * 359.97438 * 7 6 5 34 34 H 1.08004 * 125.97547 * 359.95626 * 11 10 8 35 35 H 1.09005 * 109.47076 * 89.97302 * 14 13 12 36 36 H 1.09001 * 109.46913 * 209.97126 * 14 13 12 37 37 H 1.09002 * 109.47168 * 329.97126 * 14 13 12 38 38 H 1.08000 * 126.30177 * 180.25292 * 15 13 12 39 39 H 1.08001 * 119.99819 * 180.22683 * 16 5 4 40 40 H 1.08001 * 119.91886 * 179.97438 * 17 16 5 41 41 H 0.96994 * 120.00233 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2942 2.3691 0.0044 5 6 1.9335 3.6150 -0.0005 6 6 1.1387 4.8502 -0.0001 7 6 1.7576 6.0521 0.0008 8 6 0.9668 7.2814 0.0018 9 8 -0.2498 7.2228 0.0014 10 6 1.6424 8.5935 0.0089 11 6 3.0371 8.8187 0.0093 12 7 3.2382 10.1076 0.0159 13 7 2.0002 10.7596 0.0206 14 6 1.7967 12.2105 0.0280 15 6 1.0298 9.8309 0.0111 16 6 3.3328 3.6803 -0.0001 17 6 4.0756 2.5219 -0.0001 18 6 3.4407 1.2844 0.0000 19 8 4.1776 0.1462 0.0005 20 6 5.5130 0.2819 -0.1168 21 1 5.9572 1.2663 -0.1234 22 6 6.3173 -0.8428 -0.2293 23 7 5.7766 -2.0415 -0.2209 24 14 8.1687 -0.6546 -0.3926 25 1 8.7018 0.0499 0.8010 26 1 8.7956 -1.9969 -0.4956 27 1 8.4805 0.1328 -1.6125 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2157 2.3141 0.0086 32 1 0.0601 4.7983 -0.0003 33 1 2.8364 6.1041 0.0016 34 1 3.8027 8.0569 0.0051 35 1 1.7455 12.5754 -0.9978 36 1 0.8652 12.4441 0.5437 37 1 2.6280 12.6913 0.5437 38 1 -0.0340 10.0176 0.0079 39 1 3.8286 4.6398 -0.0001 40 1 5.1544 2.5737 -0.0002 41 1 6.3390 -2.8278 -0.2992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068395782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:36 Heat of formation + Delta-G solvation = 3.952601 kcal Electronic energy + Delta-G solvation = -25711.681278 eV Core-core repulsion = 21752.759288 eV Total energy + Delta-G solvation = -3958.921990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25819 -41.28556 -39.80875 -39.29838 -38.01769 -34.64665 -34.36311 -33.80327 -31.49581 -31.22964 -30.17834 -28.39027 -27.70771 -27.27435 -25.22765 -23.50592 -23.16169 -22.07885 -21.28173 -19.96253 -19.78461 -19.30026 -18.27564 -17.60936 -17.07759 -16.66203 -16.54285 -16.46392 -16.25284 -15.84133 -15.55338 -15.46871 -15.26789 -15.10111 -15.07665 -14.84755 -14.02152 -13.80962 -13.57142 -13.49039 -13.44654 -13.28225 -13.15128 -12.86135 -12.64162 -12.43377 -12.19902 -12.10488 -12.05301 -11.90531 -11.30753 -10.95761 -10.70161 -10.56522 -10.46421 -9.69893 -9.44898 -8.50732 -8.45725 -6.10099 -0.46049 0.51215 0.59183 1.02403 1.38062 1.45828 1.51211 1.54535 1.60155 2.18539 2.56768 2.57959 2.89440 3.15900 3.17113 3.37922 3.74812 3.85386 3.96270 4.06842 4.17585 4.22998 4.33244 4.41376 4.42379 4.43756 4.44429 4.55322 4.61298 4.66114 4.70311 4.72510 4.85006 4.94965 5.09962 5.18051 5.34448 5.45129 5.54038 5.60857 5.81875 5.89426 5.93748 5.99799 6.53537 6.61515 6.80501 6.96515 7.76973 8.75534 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.002447 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.759794 B =11439.945494 C =13446.030074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.037 3.963 4 C -0.133 4.133 5 C -0.135 4.135 6 C 0.012 3.988 7 C -0.251 4.251 8 C 0.464 3.536 9 O -0.520 6.520 10 C -0.335 4.335 11 C 0.093 3.907 12 N -0.332 5.332 13 N -0.364 5.364 14 C 0.085 3.915 15 C 0.128 3.872 16 C -0.065 4.065 17 C -0.219 4.219 18 C 0.101 3.899 19 O -0.211 6.211 20 C -0.416 4.416 21 H 0.110 0.890 22 C -0.022 4.022 23 N -0.914 5.914 24 Si 1.021 2.979 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.255 1.255 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.149 0.851 34 H 0.213 0.787 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.210 0.790 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 25.073 0.307 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.008 4.008 4 C -0.152 4.152 5 C -0.136 4.136 6 C -0.007 4.007 7 C -0.270 4.270 8 C 0.350 3.650 9 O -0.403 6.403 10 C -0.348 4.348 11 C -0.094 4.094 12 N -0.152 5.152 13 N -0.142 5.142 14 C -0.054 4.054 15 C -0.025 4.025 16 C -0.083 4.083 17 C -0.238 4.238 18 C 0.049 3.951 19 O -0.117 6.117 20 C -0.491 4.491 21 H 0.127 0.873 22 C -0.221 4.221 23 N -0.551 5.551 24 Si 0.839 3.161 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.179 1.179 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.174 0.826 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.229 0.771 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.226 0.774 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.527 25.526 0.324 26.914 hybrid contribution 0.035 -1.130 -0.072 1.133 sum -8.491 24.396 0.252 25.833 Atomic orbital electron populations 1.23273 0.77107 1.04962 1.02099 1.86188 1.22952 1.26868 1.89906 1.18383 0.89117 0.85835 1.07498 1.21276 1.00132 0.90018 1.03763 1.18589 0.93059 0.92140 1.09840 1.22304 0.99411 0.90544 0.88409 1.23321 1.01826 0.91938 1.09911 1.19558 0.87168 0.88034 0.70230 1.90610 1.17084 1.90258 1.42357 1.20933 0.94462 0.94702 1.24703 1.24536 0.95984 0.93785 0.95091 1.77175 1.03970 1.07824 1.26267 1.48877 1.03362 1.08589 1.53382 1.22392 1.05628 0.72059 1.05303 1.23546 0.96980 0.87983 0.93973 1.21334 0.92676 0.97948 0.96301 1.21042 1.01132 0.90809 1.10819 1.19609 0.89580 0.88141 0.97770 1.83964 1.20214 1.27850 1.79639 1.21950 0.78853 0.95910 1.52402 0.87271 1.26685 1.06175 0.93540 0.95667 1.70189 1.38615 0.98808 1.47476 0.84622 0.73062 0.78298 0.80087 1.17847 1.19928 1.17904 0.91559 0.91621 0.87287 0.82623 0.85223 0.83324 0.77088 0.88879 0.86278 0.88471 0.77359 0.82419 0.84528 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.34 -15.19 10.28 -79.05 -0.81 -16.00 16 3 C 0.04 1.60 6.70 22.57 0.15 1.75 16 4 C -0.13 -4.53 8.78 22.66 0.20 -4.33 16 5 C -0.14 -4.22 5.87 -20.13 -0.12 -4.34 16 6 C 0.01 0.31 9.45 23.83 0.23 0.53 16 7 C -0.25 -5.76 9.07 23.63 0.21 -5.55 16 8 C 0.46 11.26 7.08 26.80 0.19 11.45 16 9 O -0.52 -15.23 16.79 -4.67 -0.08 -15.30 16 10 C -0.34 -6.90 6.11 -20.10 -0.12 -7.02 16 11 C 0.09 1.76 11.48 85.64 0.98 2.75 16 12 N -0.33 -6.76 12.50 -56.28 -0.70 -7.46 16 13 N -0.36 -5.52 3.98 -367.68 -1.46 -6.99 16 14 C 0.09 0.45 11.44 127.77 1.46 1.91 16 15 C 0.13 2.06 11.31 84.27 0.95 3.02 16 16 C -0.06 -2.09 9.40 22.57 0.21 -1.88 16 17 C -0.22 -9.03 9.14 22.33 0.20 -8.82 16 18 C 0.10 5.04 6.67 22.81 0.15 5.19 16 19 O -0.21 -12.78 9.52 -6.15 -0.06 -12.84 16 20 C -0.42 -23.75 9.48 67.94 0.64 -23.11 16 21 H 0.11 5.55 5.18 -2.91 -0.02 5.54 16 22 C -0.02 -1.25 5.49 84.86 0.47 -0.78 16 23 N -0.91 -56.12 13.67 21.62 0.30 -55.83 16 24 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 25 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 28 H 0.07 1.61 7.65 -2.38 -0.02 1.59 16 29 H 0.07 1.61 7.67 -2.39 -0.02 1.59 16 30 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.16 4.18 6.28 -2.91 -0.02 4.16 16 32 H 0.13 3.23 7.52 -2.92 -0.02 3.21 16 33 H 0.15 2.73 5.19 -2.91 -0.02 2.72 16 34 H 0.21 2.84 7.40 -2.91 -0.02 2.82 16 35 H 0.09 0.27 8.14 -2.38 -0.02 0.26 16 36 H 0.12 -0.04 8.14 -2.39 -0.02 -0.05 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.16 3.74 6.15 -2.91 -0.02 3.72 16 40 H 0.14 5.53 5.61 -2.91 -0.02 5.52 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -82.61 362.49 7.22 -75.39 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 1.09 Total: 22.64 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 6.93 Total: -27.54 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.87 Total: -70.27 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.95 Total: -44.14 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -82.61 7.22 -75.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068395782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.341 kcal (2) G-P(sol) polarization free energy of solvation -82.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds