Wall clock time and date at job start Tue Mar 31 2020 16:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47064 * 2 1 4 4 C 1.50699 * 109.47334 * 239.99810 * 2 1 3 5 5 O 1.21291 * 120.00208 * 259.97093 * 4 2 1 6 6 N 1.34783 * 119.99863 * 79.97345 * 4 2 1 7 7 C 1.37100 * 120.00060 * 175.16614 * 6 4 2 8 8 H 1.07997 * 120.00125 * 135.69922 * 7 6 4 9 9 C 1.38958 * 119.99662 * 315.42146 * 7 6 4 10 10 N 1.31402 * 119.99522 * 165.45420 * 9 7 6 11 11 Si 1.86799 * 120.00137 * 345.45788 * 9 7 6 12 12 H 1.48504 * 109.47028 * 95.61866 * 11 9 7 13 13 H 1.48492 * 109.47013 * 215.62257 * 11 9 7 14 14 H 1.48507 * 109.47227 * 335.62498 * 11 9 7 15 15 C 1.46498 * 119.99926 * 355.16648 * 6 4 2 16 16 C 1.53005 * 117.49698 * 245.44201 * 15 6 4 17 17 C 1.52998 * 117.49880 * 176.78475 * 15 6 4 18 18 N 1.46501 * 109.46915 * 119.99646 * 2 1 3 19 19 C 1.34520 * 124.46000 * 59.70372 * 18 2 1 20 20 O 1.21451 * 125.70831 * 0.03329 * 19 18 2 21 21 C 1.47817 * 108.58182 * 179.90282 * 19 18 2 22 22 C 1.38561 * 134.29769 * 180.09467 * 21 19 18 23 23 C 1.38612 * 119.71629 * 180.27317 * 22 21 19 24 24 C 1.38227 * 120.46307 * 0.02562 * 23 22 21 25 25 C 1.38615 * 120.45614 * 359.97438 * 24 23 22 26 26 C 1.38562 * 119.72026 * 359.97438 * 25 24 23 27 27 C 1.34521 * 124.46058 * 239.99955 * 18 2 1 28 28 O 1.21455 * 125.71221 * 359.96633 * 27 18 2 29 29 H 1.08996 * 109.47398 * 302.83138 * 1 2 3 30 30 H 1.09008 * 109.46717 * 62.82657 * 1 2 3 31 31 H 1.09003 * 109.46984 * 182.82379 * 1 2 3 32 32 H 0.97010 * 119.99935 * 179.97438 * 10 9 7 33 33 H 1.09000 * 115.55244 * 31.11211 * 15 6 4 34 34 H 1.08997 * 117.49646 * 0.02562 * 16 15 6 35 35 H 1.09006 * 117.49688 * 145.01961 * 16 15 6 36 36 H 1.08995 * 117.50283 * 214.97774 * 17 15 6 37 37 H 1.09000 * 117.49967 * 359.97438 * 17 15 6 38 38 H 1.08000 * 120.14157 * 0.25999 * 22 21 19 39 39 H 1.08006 * 119.76950 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.77561 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.13951 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4070 -1.8616 -1.1556 6 7 2.0654 -0.0666 -2.4141 7 6 2.6138 -0.6779 -3.5119 8 1 2.1103 -0.6273 -4.4660 9 6 3.8204 -1.3577 -3.3982 10 7 4.2060 -2.1754 -4.3518 11 14 4.8940 -1.1093 -1.8899 12 1 4.6173 -2.1839 -0.9030 13 1 6.3240 -1.1579 -2.2868 14 1 4.5938 0.2114 -1.2807 15 6 1.5154 1.2865 -2.5275 16 6 0.2850 1.4766 -3.4169 17 6 1.6503 1.9930 -3.8778 18 7 2.0183 -0.6905 1.1962 19 6 1.7444 -1.9720 1.5005 20 8 1.0642 -2.7283 0.8369 21 6 2.4126 -2.3064 2.7759 22 6 2.4876 -3.4470 3.5590 23 6 3.2168 -3.4246 4.7376 24 6 3.8685 -2.2727 5.1366 25 6 3.8023 -1.1242 4.3634 26 6 3.0779 -1.1322 3.1822 27 6 2.7948 -0.1250 2.1379 28 8 3.1966 1.0211 2.1310 29 1 -0.3634 0.5571 0.8635 30 1 -0.3633 0.4694 -0.9143 31 1 -0.3633 -1.0265 0.0506 32 1 5.0485 -2.6498 -4.2727 33 1 1.5867 1.8998 -1.6292 34 1 -0.1154 0.5949 -3.9172 35 1 -0.4529 2.2154 -3.1039 36 1 1.8100 3.0711 -3.8681 37 1 2.1486 1.4513 -4.6817 38 1 1.9800 -4.3497 3.2525 39 1 3.2763 -4.3133 5.3484 40 1 4.4339 -2.2677 6.0567 41 1 4.3138 -0.2271 4.6798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068916413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:36 Heat of formation + Delta-G solvation = 6.972154 kcal Electronic energy + Delta-G solvation = -28976.729729 eV Core-core repulsion = 25017.938677 eV Total energy + Delta-G solvation = -3958.791052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25859 -39.42297 -38.43248 -38.25538 -36.46970 -35.55425 -33.37444 -32.89970 -31.44599 -31.28577 -29.97099 -25.63783 -25.00680 -24.76526 -22.80896 -22.17839 -21.90129 -21.31790 -20.20512 -19.14796 -17.96699 -17.29574 -16.85178 -16.36939 -16.21864 -15.94266 -15.19696 -15.10773 -14.75031 -14.48083 -14.25479 -14.13293 -13.96786 -13.71347 -13.41210 -13.20902 -12.94917 -12.63933 -12.49050 -12.42725 -12.03431 -11.94231 -11.61091 -11.30761 -11.12506 -10.98731 -10.44855 -10.31218 -10.18583 -10.04910 -9.96593 -9.84336 -9.72885 -9.38649 -9.35114 -8.65854 -8.43149 -7.54221 -6.25508 -4.04915 0.06700 0.82177 2.05752 2.40642 3.13091 3.24447 3.40475 3.48825 3.55014 3.60602 3.70274 4.22319 4.38181 4.42684 4.47996 4.50635 4.66535 4.87442 4.96921 5.05840 5.11077 5.18590 5.24612 5.32111 5.40048 5.51546 5.52581 5.59567 5.67997 5.79364 5.83594 5.90494 5.98457 6.04225 6.10365 6.23820 6.29130 6.41009 6.58654 6.83218 6.90805 7.40484 7.78042 7.84225 7.96048 8.66838 8.81996 9.34296 9.69122 10.79997 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.005084 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.914956 B = 5505.859650 C = 6099.478059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 H 0.116 0.884 4 C 0.447 3.553 5 O -0.519 6.519 6 N -0.431 5.431 7 C -0.337 4.337 8 H 0.098 0.902 9 C 0.094 3.906 10 N -0.863 5.863 11 Si 0.901 3.099 12 H -0.261 1.261 13 H -0.303 1.303 14 H -0.278 1.278 15 C 0.055 3.945 16 C -0.196 4.196 17 C -0.168 4.168 18 N -0.560 5.560 19 C 0.573 3.427 20 O -0.424 6.424 21 C -0.126 4.126 22 C -0.050 4.050 23 C -0.097 4.097 24 C -0.104 4.104 25 C -0.048 4.048 26 C -0.140 4.140 27 C 0.574 3.426 28 O -0.473 6.473 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.273 0.727 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 3.884 17.958 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 H 0.134 0.866 4 C 0.235 3.765 5 O -0.399 6.399 6 N -0.152 5.152 7 C -0.463 4.463 8 H 0.116 0.884 9 C -0.115 4.115 10 N -0.498 5.498 11 Si 0.731 3.269 12 H -0.187 1.187 13 H -0.231 1.231 14 H -0.204 1.204 15 C -0.050 4.050 16 C -0.235 4.235 17 C -0.205 4.205 18 N -0.302 5.302 19 C 0.360 3.640 20 O -0.292 6.292 21 C -0.130 4.130 22 C -0.069 4.069 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.066 4.066 26 C -0.144 4.144 27 C 0.363 3.637 28 O -0.345 6.345 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.202 3.373 17.422 18.236 hybrid contribution 0.740 0.231 0.520 0.933 sum -3.462 3.604 17.942 18.625 Atomic orbital electron populations 1.22064 0.91521 1.04476 1.03357 1.21349 0.96818 0.97121 0.83023 0.86644 1.20098 0.84045 0.87427 0.84978 1.90609 1.48945 1.16283 1.84099 1.43043 1.53066 1.10452 1.08657 1.18684 1.04611 1.33996 0.89020 0.88442 1.25230 0.96345 0.93315 0.96654 1.69695 1.22250 1.23708 1.34174 0.86455 0.77397 0.79153 0.83860 1.18675 1.23143 1.20366 1.21877 1.00504 0.87535 0.95134 1.23330 0.91441 1.03278 1.05458 1.23166 0.99419 0.99147 0.98795 1.46328 1.47737 1.13862 1.22255 1.18135 0.80371 0.80999 0.84527 1.90803 1.34017 1.51186 1.53177 1.20767 1.00358 0.95585 0.96278 1.20812 0.96639 0.96779 0.92678 1.21431 0.95703 0.98699 0.95695 1.21395 0.98770 0.92247 0.99805 1.20771 0.95385 0.99132 0.91341 1.20619 1.01802 0.94909 0.97022 1.18379 0.76879 0.86726 0.81758 1.90772 1.49804 1.17307 1.76660 0.91798 0.89461 0.90363 0.91695 0.87457 0.88540 0.89266 0.89283 0.86834 0.84012 0.84225 0.84260 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.13 37.16 0.34 -2.15 16 2 C 0.12 2.39 2.44 -69.08 -0.17 2.22 16 3 H 0.12 2.11 6.07 -51.93 -0.32 1.80 16 4 C 0.45 11.02 4.75 -10.98 -0.05 10.97 16 5 O -0.52 -14.89 10.13 -15.47 -0.16 -15.05 16 6 N -0.43 -10.47 2.49 -107.72 -0.27 -10.73 16 7 C -0.34 -9.49 8.39 -14.93 -0.13 -9.61 16 8 H 0.10 2.84 7.42 -52.49 -0.39 2.45 16 9 C 0.09 2.80 4.97 -17.47 -0.09 2.72 16 10 N -0.86 -26.62 13.96 55.50 0.77 -25.85 16 11 Si 0.90 25.13 24.62 -169.99 -4.19 20.94 16 12 H -0.26 -7.69 6.50 56.52 0.37 -7.33 16 13 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 14 H -0.28 -7.60 7.05 56.52 0.40 -7.20 16 15 C 0.06 1.03 4.89 -67.93 -0.33 0.70 16 16 C -0.20 -3.13 9.98 -26.69 -0.27 -3.39 16 17 C -0.17 -2.86 9.80 -26.69 -0.26 -3.12 16 18 N -0.56 -10.95 2.44 -111.74 -0.27 -11.22 16 19 C 0.57 11.19 6.72 -12.46 -0.08 11.11 16 20 O -0.42 -9.42 14.89 -15.61 -0.23 -9.65 16 21 C -0.13 -1.95 6.40 -104.83 -0.67 -2.63 16 22 C -0.05 -0.59 10.09 -39.32 -0.40 -0.98 16 23 C -0.10 -0.81 10.03 -39.45 -0.40 -1.21 16 24 C -0.10 -0.84 10.04 -39.45 -0.40 -1.24 16 25 C -0.05 -0.51 10.09 -39.32 -0.40 -0.91 16 26 C -0.14 -2.08 6.40 -104.84 -0.67 -2.75 16 27 C 0.57 10.37 8.02 -12.46 -0.10 10.27 16 28 O -0.47 -9.11 17.43 5.40 0.09 -9.02 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.29 6.69 -51.92 -0.35 0.94 16 31 H 0.08 1.38 6.73 -51.93 -0.35 1.03 16 32 H 0.27 7.97 8.31 -40.82 -0.34 7.63 16 33 H 0.11 1.75 6.44 -51.93 -0.33 1.42 16 34 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.11 2.23 6.72 -51.93 -0.35 1.88 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -37.27 341.94 -7.80 -45.07 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.64 Total: 0.37 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -4.07 Total: 9.99 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.23 Total: -47.81 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.29 Total: -33.72 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.19 Total: 20.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.27 -7.80 -45.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.039 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds