Wall clock time and date at job start Tue Mar 31 2020 16:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47493 * 2 1 4 4 C 1.34897 * 117.00465 * 179.97438 * 3 2 1 5 5 O 1.21633 * 119.99585 * 359.97438 * 4 3 2 6 6 C 1.46471 * 120.00203 * 180.02562 * 4 3 2 7 7 C 1.38006 * 126.17321 * 180.30815 * 6 4 3 8 8 C 1.40177 * 107.09194 * 180.10758 * 7 6 4 9 9 N 1.40644 * 126.11754 * 179.87680 * 8 7 6 10 10 C 1.34780 * 119.99888 * 179.71335 * 9 8 7 11 11 O 1.21582 * 119.99773 * 359.97438 * 10 9 8 12 12 C 1.47864 * 119.99905 * 179.97438 * 10 9 8 13 13 C 1.39929 * 120.02803 * 359.97438 * 12 10 9 14 14 C 1.38321 * 120.35709 * 180.02562 * 13 12 10 15 15 C 1.37755 * 120.41403 * 359.97438 * 14 13 12 16 16 C 1.40752 * 120.04268 * 0.02562 * 15 14 13 17 17 C 1.41434 * 120.17823 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99724 * 335.20666 * 17 16 15 19 19 C 1.39934 * 120.00325 * 155.21159 * 17 16 15 20 20 N 1.30832 * 119.99780 * 342.27880 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 162.27717 * 19 17 16 22 22 H 1.48498 * 109.47207 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47097 * 119.99920 * 21 19 17 24 24 H 1.48504 * 109.47240 * 240.00073 * 21 19 17 25 25 C 1.39004 * 120.02446 * 179.97438 * 12 10 9 26 26 C 1.35970 * 107.76072 * 359.60692 * 8 7 6 27 27 N 1.35795 * 108.78666 * 0.24466 * 26 8 7 28 28 H 0.97002 * 125.64565 * 179.97438 * 27 26 8 29 29 H 1.08996 * 109.46931 * 300.00439 * 1 2 3 30 30 H 1.08999 * 109.46595 * 60.00245 * 1 2 3 31 31 H 1.08994 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47620 * 239.99555 * 2 1 3 33 33 H 1.09003 * 109.46906 * 120.00156 * 2 1 3 34 34 H 1.08000 * 126.45472 * 359.95542 * 7 6 4 35 35 H 0.97000 * 120.00378 * 359.70390 * 9 8 7 36 36 H 1.08003 * 119.81891 * 359.97438 * 13 12 10 37 37 H 1.08000 * 119.79351 * 179.97438 * 14 13 12 38 38 H 1.08002 * 119.97805 * 180.02562 * 15 14 13 39 39 H 0.96997 * 120.00049 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.20405 * 0.25788 * 25 12 10 41 41 H 1.07998 * 125.60686 * 180.21864 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3514 1.5457 0.0005 5 8 4.0923 0.5810 0.0015 6 6 3.9113 2.8991 0.0011 7 6 5.2521 3.2260 -0.0043 8 6 5.3350 4.6253 0.0012 9 7 6.5182 5.3857 0.0008 10 6 6.4541 6.7320 0.0006 11 8 5.3734 7.2890 0.0002 12 6 7.6980 7.5313 0.0008 13 6 8.9420 6.8907 0.0017 14 6 10.1100 7.6319 0.0024 15 6 10.0623 9.0086 0.0017 16 6 8.8202 9.6706 0.0008 17 6 8.7679 11.0840 -0.0005 18 1 9.5964 11.6554 0.3914 19 6 7.6428 11.7421 -0.5095 20 7 6.8064 11.1025 -1.2861 21 14 7.3349 13.5338 -0.0803 22 1 8.4203 14.0239 0.8068 23 1 7.3098 14.3437 -1.3247 24 1 6.0302 13.6585 0.6179 25 6 7.6325 8.9198 0.0000 26 6 4.0669 5.1160 0.0007 27 7 3.1952 4.0748 0.0007 28 1 2.2279 4.1474 0.0008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 6.0813 2.5341 -0.0090 35 1 7.3804 4.9412 0.0008 36 1 8.9905 5.8118 0.0027 37 1 11.0652 7.1280 0.0036 38 1 10.9786 9.5803 0.0019 39 1 6.0267 11.5588 -1.6392 40 1 6.6745 9.4186 0.0035 41 1 3.7974 6.1618 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075256132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:26 Heat of formation + Delta-G solvation = -60.310258 kcal Electronic energy + Delta-G solvation = -25944.787173 eV Core-core repulsion = 21983.078537 eV Total energy + Delta-G solvation = -3961.708637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52238 -40.17756 -39.05951 -37.08481 -36.76238 -34.42821 -33.73312 -32.12782 -30.79335 -30.05242 -29.52594 -28.68669 -25.38374 -24.46987 -23.31410 -22.72150 -21.11548 -20.80652 -20.17190 -19.33063 -18.99953 -17.77001 -17.22459 -16.84892 -16.24195 -15.76968 -15.05886 -14.95723 -14.93999 -14.60493 -14.35926 -13.87630 -13.69620 -13.60481 -13.57951 -13.24143 -13.08882 -12.76916 -12.58594 -12.30386 -12.29026 -11.99405 -11.72152 -11.24463 -11.13752 -10.88498 -10.87314 -10.81774 -10.62624 -10.51603 -10.06516 -9.74579 -9.26981 -9.12516 -8.67327 -7.84094 -7.58015 -7.48941 -6.85110 -4.46059 1.09066 2.00306 2.31976 2.68302 2.77712 2.99736 3.02524 3.05364 3.10029 3.12161 3.65832 3.86101 3.89200 4.53414 4.54975 4.58775 4.65613 4.88604 5.06916 5.23423 5.35904 5.37454 5.50774 5.54597 5.59583 5.67274 5.92990 6.06842 6.11171 6.21471 6.30548 6.58602 6.69518 6.91904 6.94941 7.05930 7.16104 7.31580 7.37498 7.55993 7.63542 7.69857 7.86016 7.99587 8.12310 8.44804 8.73427 8.76539 8.79651 10.09665 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.002246 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.856374 B =12460.945141 C =13620.595553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.364 6.364 4 C 0.541 3.459 5 O -0.504 6.504 6 C -0.042 4.042 7 C -0.115 4.115 8 C 0.061 3.939 9 N -0.650 5.650 10 C 0.567 3.433 11 O -0.537 6.537 12 C -0.127 4.127 13 C -0.218 4.218 14 C -0.096 4.096 15 C -0.209 4.209 16 C 0.098 3.902 17 C -0.458 4.458 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.270 1.270 25 C -0.088 4.088 26 C 0.026 3.974 27 N -0.525 5.525 28 H 0.426 0.574 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.412 0.588 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.284 0.716 40 H 0.135 0.865 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 -15.340 1.754 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.282 6.282 4 C 0.387 3.613 5 O -0.392 6.392 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.039 4.039 9 N -0.295 5.295 10 C 0.359 3.641 11 O -0.415 6.415 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.114 4.114 15 C -0.229 4.229 16 C 0.095 3.905 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.108 4.108 26 C -0.112 4.112 27 N -0.123 5.123 28 H 0.264 0.736 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.249 0.751 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.860 -15.207 1.602 18.755 hybrid contribution -0.059 0.338 0.018 0.344 sum -10.919 -14.869 1.620 18.518 Atomic orbital electron populations 1.21819 0.92527 1.03096 1.03577 1.23033 0.95289 0.79731 1.02835 1.86554 1.23974 1.32862 1.84826 1.19722 0.80371 0.88105 0.73078 1.90897 1.60331 1.41021 1.46929 1.18897 0.91082 0.83515 1.21908 1.20902 0.94139 0.93409 1.06087 1.16984 0.86996 0.90097 1.09796 1.43083 1.06760 1.06127 1.73523 1.18937 0.90276 0.80446 0.74420 1.90532 1.30205 1.70865 1.49850 1.19315 0.90389 0.94325 1.09045 1.20355 0.92048 0.96782 1.14626 1.20441 0.96082 0.94227 1.00684 1.21128 0.97029 0.93410 1.11372 1.17606 0.90475 0.93588 0.88825 1.19625 1.02277 0.91295 1.35501 0.89977 1.25969 0.94969 1.01036 0.92649 1.69795 1.10886 1.38721 1.21332 0.86231 0.79464 0.81586 0.79330 1.18317 1.19918 1.19544 1.21620 0.99981 0.90256 0.98986 1.22850 0.87958 0.93963 1.06422 1.41965 1.09359 1.04773 1.56193 0.73612 0.91433 0.91432 0.90087 0.91033 0.91038 0.82858 0.75088 0.89077 0.88737 0.88513 0.90471 0.84762 0.77945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.06 0.52 6.20 37.16 0.23 0.75 16 3 O -0.36 -3.85 10.23 -41.03 -0.42 -4.27 16 4 C 0.54 6.94 7.93 34.05 0.27 7.21 16 5 O -0.50 -7.51 16.68 -19.37 -0.32 -7.83 16 6 C -0.04 -0.55 7.09 -82.02 -0.58 -1.14 16 7 C -0.12 -1.60 10.66 -38.94 -0.42 -2.01 16 8 C 0.06 0.94 6.95 -83.90 -0.58 0.36 16 9 N -0.65 -10.83 5.42 -10.87 -0.06 -10.89 16 10 C 0.57 11.75 7.74 -12.32 -0.10 11.65 16 11 O -0.54 -12.13 13.47 5.29 0.07 -12.06 16 12 C -0.13 -2.88 5.87 -105.04 -0.62 -3.49 16 13 C -0.22 -4.40 9.55 -38.92 -0.37 -4.78 16 14 C -0.10 -1.98 10.01 -39.73 -0.40 -2.38 16 15 C -0.21 -4.83 9.78 -38.81 -0.38 -5.21 16 16 C 0.10 2.50 5.57 -106.87 -0.60 1.91 16 17 C -0.46 -11.70 9.05 -37.73 -0.34 -12.05 16 18 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 19 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.78 -20.08 10.97 55.55 0.61 -19.47 16 21 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 25 C -0.09 -2.26 8.23 -38.44 -0.32 -2.58 16 26 C 0.03 0.39 10.78 -16.61 -0.18 0.21 16 27 N -0.53 -6.20 6.11 -9.24 -0.06 -6.25 16 28 H 0.43 3.70 8.96 -40.82 -0.37 3.33 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.41 5.87 6.84 -40.82 -0.28 5.60 16 36 H 0.09 1.50 6.38 -52.48 -0.33 1.17 16 37 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.13 3.69 5.77 -52.49 -0.30 3.39 16 41 H 0.20 3.24 5.79 -52.49 -0.30 2.93 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -30.04 359.45 -8.39 -38.43 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.52 Total: 13.93 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -4.08 Total: -10.26 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.49 Total: -36.61 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.67 Total: -24.15 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.04 -8.39 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075256132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.882 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds