Wall clock time and date at job start Tue Mar 31 2020 16:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47493 * 2 1 4 4 C 1.34897 * 117.00465 * 179.97438 * 3 2 1 5 5 O 1.21633 * 119.99585 * 359.97438 * 4 3 2 6 6 C 1.46471 * 120.00203 * 180.02562 * 4 3 2 7 7 C 1.38006 * 126.17321 * 180.30815 * 6 4 3 8 8 C 1.40177 * 107.09194 * 180.10758 * 7 6 4 9 9 N 1.40644 * 126.11754 * 179.87680 * 8 7 6 10 10 C 1.34780 * 119.99888 * 179.71335 * 9 8 7 11 11 O 1.21582 * 119.99773 * 359.97438 * 10 9 8 12 12 C 1.47864 * 119.99905 * 179.97438 * 10 9 8 13 13 C 1.39929 * 120.02803 * 359.97438 * 12 10 9 14 14 C 1.38321 * 120.35709 * 180.02562 * 13 12 10 15 15 C 1.37755 * 120.41403 * 359.97438 * 14 13 12 16 16 C 1.40752 * 120.04268 * 0.02562 * 15 14 13 17 17 C 1.41434 * 120.17823 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99724 * 335.20666 * 17 16 15 19 19 C 1.39934 * 120.00325 * 155.21159 * 17 16 15 20 20 N 1.30832 * 119.99780 * 342.27880 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 162.27717 * 19 17 16 22 22 H 1.48498 * 109.47207 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47097 * 119.99920 * 21 19 17 24 24 H 1.48504 * 109.47240 * 240.00073 * 21 19 17 25 25 C 1.39004 * 120.02446 * 179.97438 * 12 10 9 26 26 C 1.35970 * 107.76072 * 359.60692 * 8 7 6 27 27 N 1.35795 * 108.78666 * 0.24466 * 26 8 7 28 28 H 0.97002 * 125.64565 * 179.97438 * 27 26 8 29 29 H 1.08996 * 109.46931 * 300.00439 * 1 2 3 30 30 H 1.08999 * 109.46595 * 60.00245 * 1 2 3 31 31 H 1.08994 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47620 * 239.99555 * 2 1 3 33 33 H 1.09003 * 109.46906 * 120.00156 * 2 1 3 34 34 H 1.08000 * 126.45472 * 359.95542 * 7 6 4 35 35 H 0.97000 * 120.00378 * 359.70390 * 9 8 7 36 36 H 1.08003 * 119.81891 * 359.97438 * 13 12 10 37 37 H 1.08000 * 119.79351 * 179.97438 * 14 13 12 38 38 H 1.08002 * 119.97805 * 180.02562 * 15 14 13 39 39 H 0.96997 * 120.00049 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.20405 * 0.25788 * 25 12 10 41 41 H 1.07998 * 125.60686 * 180.21864 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3514 1.5457 0.0005 5 8 4.0923 0.5810 0.0015 6 6 3.9113 2.8991 0.0011 7 6 5.2521 3.2260 -0.0043 8 6 5.3350 4.6253 0.0012 9 7 6.5182 5.3857 0.0008 10 6 6.4541 6.7320 0.0006 11 8 5.3734 7.2890 0.0002 12 6 7.6980 7.5313 0.0008 13 6 8.9420 6.8907 0.0017 14 6 10.1100 7.6319 0.0024 15 6 10.0623 9.0086 0.0017 16 6 8.8202 9.6706 0.0008 17 6 8.7679 11.0840 -0.0005 18 1 9.5964 11.6554 0.3914 19 6 7.6428 11.7421 -0.5095 20 7 6.8064 11.1025 -1.2861 21 14 7.3349 13.5338 -0.0803 22 1 8.4203 14.0239 0.8068 23 1 7.3098 14.3437 -1.3247 24 1 6.0302 13.6585 0.6179 25 6 7.6325 8.9198 0.0000 26 6 4.0669 5.1160 0.0007 27 7 3.1952 4.0748 0.0007 28 1 2.2279 4.1474 0.0008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 6.0813 2.5341 -0.0090 35 1 7.3804 4.9412 0.0008 36 1 8.9905 5.8118 0.0027 37 1 11.0652 7.1280 0.0036 38 1 10.9786 9.5803 0.0019 39 1 6.0267 11.5588 -1.6392 40 1 6.6745 9.4186 0.0035 41 1 3.7974 6.1618 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075256132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:25 Heat of formation + Delta-G solvation = -77.558839 kcal Electronic energy + Delta-G solvation = -25945.535128 eV Core-core repulsion = 21983.078537 eV Total energy + Delta-G solvation = -3962.456591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64718 -41.25841 -40.52276 -38.79867 -37.70831 -35.92098 -35.47364 -32.76530 -32.31624 -31.33597 -31.25443 -29.91792 -27.19985 -25.39215 -24.86027 -23.50142 -22.84632 -22.12196 -21.35980 -20.73691 -20.16126 -19.41363 -18.23682 -17.84514 -17.69776 -17.19801 -16.63909 -16.39481 -16.20017 -16.01782 -15.44066 -15.43086 -15.03065 -14.67622 -14.65861 -14.53190 -14.42109 -14.25323 -13.65489 -13.50527 -13.45573 -12.99089 -12.96042 -12.78589 -12.56365 -12.54289 -12.17330 -11.98778 -11.92606 -11.82699 -11.58263 -11.48830 -11.06588 -10.76885 -9.77220 -9.54858 -9.37658 -8.82174 -8.64726 -6.36060 0.03929 0.30727 1.01769 1.38606 1.41446 1.42906 1.51486 1.54231 1.85864 1.89839 2.20285 2.29680 2.40287 2.81103 3.70098 3.71445 3.80828 4.00023 4.04988 4.20214 4.26390 4.32569 4.39387 4.44891 4.60286 4.80682 4.83057 4.90900 4.91189 5.07987 5.10995 5.12009 5.20623 5.32971 5.33635 5.48370 5.53760 5.78950 5.87580 5.94653 6.06933 6.30059 6.36579 6.51936 6.58617 6.66915 6.90013 6.95400 7.23051 8.31802 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.002246 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.856374 B =12460.945141 C =13620.595553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.547 3.453 5 O -0.525 6.525 6 C -0.039 4.039 7 C -0.114 4.114 8 C 0.037 3.963 9 N -0.630 5.630 10 C 0.563 3.437 11 O -0.565 6.565 12 C -0.136 4.136 13 C -0.198 4.198 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.083 0.917 19 C 0.030 3.970 20 N -0.823 5.823 21 Si 0.981 3.019 22 H -0.253 1.253 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.125 4.125 26 C 0.021 3.979 27 N -0.506 5.506 28 H 0.440 0.560 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.425 0.575 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.287 0.713 40 H 0.103 0.897 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 -17.659 2.035 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.279 6.279 4 C 0.394 3.606 5 O -0.415 6.415 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.062 4.062 9 N -0.275 5.275 10 C 0.354 3.646 11 O -0.445 6.445 12 C -0.139 4.139 13 C -0.218 4.218 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.063 3.937 17 C -0.525 4.525 18 H 0.101 0.899 19 C -0.185 4.185 20 N -0.449 5.449 21 Si 0.802 3.198 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.145 4.145 26 C -0.118 4.118 27 N -0.104 5.104 28 H 0.281 0.719 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.188 0.812 35 H 0.264 0.736 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.807 -17.580 1.885 20.722 hybrid contribution -0.105 0.756 -0.060 0.765 sum -10.913 -16.824 1.825 20.136 Atomic orbital electron populations 1.21844 0.90306 1.04572 1.03696 1.23373 0.96999 0.78337 1.03067 1.86558 1.22497 1.34663 1.84147 1.19606 0.81009 0.87492 0.72520 1.90891 1.61042 1.41555 1.47996 1.19034 0.91141 0.83992 1.21015 1.21060 0.95043 0.92599 1.05575 1.17150 0.86659 0.90834 1.11585 1.42740 1.07997 1.04697 1.72088 1.18725 0.89297 0.81689 0.74860 1.90530 1.30882 1.71838 1.51273 1.19603 0.92452 0.93674 1.08154 1.20889 0.90748 0.99144 1.11035 1.20918 0.98170 0.93316 0.98934 1.21427 0.96462 0.94997 1.10719 1.17952 0.91605 0.94204 0.89898 1.19868 1.03380 0.91920 1.37361 0.89935 1.26812 0.94356 1.05322 0.91969 1.69882 1.11642 1.40576 1.22771 0.85171 0.79207 0.76210 0.79241 1.17642 1.19016 1.19422 1.21429 0.98855 0.91832 1.02401 1.22623 0.88493 0.93975 1.06736 1.41853 1.09946 1.03746 1.54894 0.71854 0.91280 0.91320 0.87925 0.90871 0.90833 0.81227 0.73593 0.84483 0.84403 0.87432 0.90250 0.87890 0.79383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 71.98 0.74 -0.45 16 2 C 0.06 0.77 6.20 71.98 0.45 1.22 16 3 O -0.36 -6.90 10.23 -58.11 -0.59 -7.50 16 4 C 0.55 12.99 7.93 69.97 0.55 13.54 16 5 O -0.52 -14.69 16.68 19.40 0.32 -14.37 16 6 C -0.04 -0.96 7.09 40.32 0.29 -0.67 16 7 C -0.11 -2.91 10.66 22.69 0.24 -2.67 16 8 C 0.04 1.10 6.95 37.67 0.26 1.36 16 9 N -0.63 -20.12 5.42 -306.58 -1.66 -21.78 16 10 C 0.56 23.46 7.74 86.79 0.67 24.14 16 11 O -0.57 -26.53 13.47 -3.97 -0.05 -26.59 16 12 C -0.14 -6.15 5.87 -20.14 -0.12 -6.27 16 13 C -0.20 -7.51 9.55 22.70 0.22 -7.30 16 14 C -0.10 -3.68 10.01 22.18 0.22 -3.46 16 15 C -0.22 -9.89 9.78 22.77 0.22 -9.67 16 16 C 0.07 3.49 5.57 -21.32 -0.12 3.37 16 17 C -0.50 -26.51 9.05 23.47 0.21 -26.30 16 18 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 19 C 0.03 1.56 5.14 85.25 0.44 2.00 16 20 N -0.82 -44.65 10.97 21.82 0.24 -44.41 16 21 Si 0.98 38.84 29.59 68.60 2.03 40.87 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.12 -6.68 8.23 23.01 0.19 -6.49 16 26 C 0.02 0.62 10.78 83.55 0.90 1.52 16 27 N -0.51 -11.25 6.11 -183.13 -1.12 -12.37 16 28 H 0.44 6.97 8.96 -92.71 -0.83 6.14 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.42 10.91 6.84 -92.71 -0.63 10.27 16 36 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 37 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 40 H 0.10 6.10 5.77 -2.91 -0.02 6.08 16 41 H 0.19 6.19 5.79 -2.91 -0.02 6.18 16 Total: -1.00 -68.47 359.45 4.18 -64.29 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.36 Total: 37.97 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.37 Total: -16.12 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.54 Total: -78.56 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.32 Total: -48.46 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -68.47 4.18 -64.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075256132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.267 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds