Wall clock time and date at job start Tue Mar 31 2020 15:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99916 * 2 1 4 4 N 1.46500 * 109.47010 * 125.00306 * 3 2 1 5 5 C 1.34776 * 120.00205 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99855 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99985 * 180.02562 * 5 4 3 8 8 H 1.09001 * 109.47272 * 59.99802 * 7 5 4 9 9 C 1.47201 * 109.47282 * 299.99428 * 7 5 4 10 10 N 5.61745 * 111.85481 * 65.00639 * 2 1 3 11 11 C 1.50703 * 109.46790 * 179.97438 * 7 5 4 12 12 O 1.20763 * 120.00180 * 29.99996 * 11 7 5 13 13 C 1.50700 * 119.99729 * 209.99804 * 11 7 5 14 14 C 1.50701 * 109.47133 * 180.02562 * 13 11 7 15 15 C 1.38302 * 119.93101 * 89.99638 * 14 13 11 16 16 C 1.38105 * 120.06695 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93200 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.07178 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99766 * 354.46580 * 18 17 16 20 20 H 1.08005 * 119.99910 * 5.05947 * 19 18 17 21 21 C 1.38653 * 120.00325 * 185.05796 * 19 18 17 22 22 N 1.31555 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00359 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47111 * 59.99485 * 23 21 19 25 25 H 1.48495 * 109.47007 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47035 * 299.99958 * 23 21 19 27 27 C 1.38880 * 119.86456 * 0.27348 * 17 16 15 28 28 C 1.38102 * 119.92774 * 359.49328 * 27 17 16 29 29 H 1.08000 * 119.99812 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00044 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00044 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47301 * 5.00409 * 3 2 1 33 33 H 1.09000 * 109.47200 * 245.00155 * 3 2 1 34 34 H 0.97005 * 120.00018 * 0.02562 * 4 3 2 35 35 H 1.08992 * 109.47190 * 59.99895 * 13 11 7 36 36 H 1.09000 * 109.47067 * 299.99775 * 13 11 7 37 37 H 1.08001 * 119.96675 * 0.02562 * 15 14 13 38 38 H 1.07996 * 120.03107 * 179.97438 * 16 15 14 39 39 H 0.97003 * 120.00171 * 179.97438 * 22 21 19 40 40 H 1.08001 * 120.03810 * 179.72208 * 27 17 16 41 41 H 1.07994 * 119.96815 * 180.22560 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3335 6 8 3.7144 3.3559 0.5784 7 6 4.7357 2.4362 2.4970 8 1 5.4409 1.6100 2.4067 9 6 3.9830 2.3036 3.7550 10 7 3.4011 2.2029 4.7255 11 6 5.4891 3.7414 2.4971 12 8 4.9699 4.7383 2.0556 13 6 6.8904 3.8024 3.0481 14 6 7.4148 5.2105 2.9325 15 6 7.2165 6.1078 3.9662 16 6 7.6954 7.3990 3.8630 17 6 8.3770 7.7960 2.7201 18 8 8.8494 9.0644 2.6159 19 6 8.5250 9.9215 3.6049 20 1 7.9850 9.5676 4.4707 21 6 8.8847 11.2573 3.5104 22 7 9.5429 11.6882 2.4561 23 14 8.4359 12.4446 4.8809 24 1 9.0603 11.9938 6.1506 25 1 8.9301 13.8029 4.5406 26 1 6.9600 12.4810 5.0408 27 6 8.5700 6.8942 1.6817 28 6 8.0930 5.6030 1.7929 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.0452 0.5743 1.7351 35 1 7.5329 3.1275 2.4827 36 1 6.8820 3.5032 4.0962 37 1 6.6866 5.7983 4.8550 38 1 7.5398 8.0993 4.6703 39 1 9.7942 12.6228 2.3898 40 1 9.0958 7.2013 0.7897 41 1 8.2459 4.9002 0.9873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111945124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:44 Heat of formation + Delta-G solvation = -15.478776 kcal Electronic energy + Delta-G solvation = -25809.807351 eV Core-core repulsion = 21850.042753 eV Total energy + Delta-G solvation = -3959.764598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -40.96060 -39.32609 -38.60895 -37.01223 -36.51108 -36.17412 -33.45877 -32.57320 -32.11658 -31.02698 -30.14129 -27.14928 -26.24323 -25.09286 -21.98420 -21.78251 -21.30786 -20.76196 -20.06265 -18.74101 -17.96880 -17.53287 -17.04260 -16.88033 -16.12074 -15.58397 -15.27086 -14.93749 -14.77335 -14.49038 -14.35962 -14.05294 -13.96883 -13.74816 -13.59655 -13.46825 -13.27042 -13.08235 -12.89485 -12.68894 -12.55545 -12.40602 -11.85807 -11.70070 -11.52309 -11.26365 -10.87997 -10.75404 -10.63272 -10.59556 -10.41994 -10.18608 -9.63905 -9.52778 -9.31304 -8.79611 -8.14591 -7.16304 -6.42396 -4.01005 1.47121 1.62088 1.86309 2.13030 2.26123 2.31438 2.35944 2.78894 3.15174 3.17129 3.19426 3.40806 3.73990 3.99454 4.09842 4.25659 4.45311 4.54457 4.60029 4.94983 5.04233 5.10734 5.21024 5.25544 5.29984 5.32713 5.43372 5.65873 5.72201 5.79721 5.85372 5.97641 6.12539 6.23193 6.42834 6.71623 6.87026 6.90928 6.92494 7.06909 7.24127 7.36211 7.40160 7.46644 7.68751 7.84517 8.02585 9.03105 9.72996 10.75467 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.002130 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.905738 B =13141.568908 C =13229.613326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.726 5.726 5 C 0.524 3.476 6 O -0.485 6.485 7 C -0.063 4.063 8 H 0.165 0.835 9 C 0.211 3.789 10 N -0.388 5.388 11 C 0.357 3.643 12 O -0.371 6.371 13 C -0.100 4.100 14 C -0.184 4.184 15 C -0.058 4.058 16 C -0.233 4.233 17 C 0.158 3.842 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.191 4.191 28 C -0.058 4.058 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.402 0.598 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.117 0.883 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 -26.378 -2.011 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.380 5.380 5 C 0.305 3.695 6 O -0.356 6.356 7 C -0.089 4.089 8 H 0.182 0.818 9 C -0.108 4.108 10 N -0.064 5.064 11 C 0.222 3.778 12 O -0.235 6.235 13 C -0.137 4.137 14 C -0.185 4.185 15 C -0.076 4.076 16 C -0.252 4.252 17 C 0.104 3.896 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.210 4.210 28 C -0.076 4.076 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.237 0.763 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.978 -24.859 -1.649 27.643 hybrid contribution -0.062 0.006 0.685 0.688 sum -12.040 -24.853 -0.963 27.632 Atomic orbital electron populations 1.24031 0.95842 1.02602 0.97534 1.22981 0.96252 0.97984 1.02589 1.20479 0.91768 0.95882 0.89515 1.45939 1.41045 1.19710 1.31268 1.19540 0.81178 0.83094 0.85642 1.90914 1.65540 1.33715 1.45388 1.19732 0.97283 1.05506 0.86362 0.81832 1.27656 0.94578 0.94753 0.93779 1.81303 1.07695 1.07195 1.10214 1.24105 0.89610 0.86473 0.77602 1.90574 1.67911 1.35199 1.29833 1.20817 0.92581 0.97590 1.02707 1.18695 1.08261 0.94213 0.97353 1.20532 0.97118 0.92972 0.96990 1.21108 1.06967 0.97051 1.00088 1.19399 0.90961 0.86446 0.92818 1.83977 1.63125 1.15221 1.45634 1.21284 1.38048 0.88681 0.98778 0.89113 1.25287 0.96434 0.96597 0.98183 1.70029 1.35734 1.16394 1.27534 0.85785 0.79107 0.78871 0.79702 1.19509 1.20268 1.19493 1.20175 1.08575 0.93256 0.99010 1.20425 0.96440 0.94892 0.95867 0.87758 0.88052 0.86502 0.90705 0.90001 0.76348 0.87746 0.88227 0.87835 0.85572 0.91971 0.86446 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 14.32 29.01 0.42 -0.29 16 2 C -0.18 -0.80 9.63 -36.02 -0.35 -1.14 16 3 C 0.15 0.95 6.11 -5.19 -0.03 0.92 16 4 N -0.73 -4.72 5.44 -61.47 -0.33 -5.06 16 5 C 0.52 5.13 7.07 -10.99 -0.08 5.05 16 6 O -0.48 -7.23 14.65 -17.83 -0.26 -7.49 16 7 C -0.06 -0.48 2.85 -95.71 -0.27 -0.76 16 8 H 0.16 0.32 8.12 -51.93 -0.42 -0.10 16 9 C 0.21 1.96 14.39 -20.76 -0.30 1.66 16 10 N -0.39 -4.50 18.54 42.15 0.78 -3.72 16 11 C 0.36 4.25 6.04 -29.03 -0.18 4.08 16 12 O -0.37 -6.49 14.56 -17.38 -0.25 -6.75 16 13 C -0.10 -1.06 5.75 -29.03 -0.17 -1.22 16 14 C -0.18 -3.03 4.38 -104.57 -0.46 -3.49 16 15 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 16 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 17 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 18 O -0.18 -5.13 9.76 0.04 0.00 -5.13 16 19 C -0.39 -11.16 9.49 30.89 0.29 -10.86 16 20 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 23 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 27 C -0.19 -4.10 9.99 -39.39 -0.39 -4.50 16 28 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 29 H 0.10 0.32 8.06 -52.49 -0.42 -0.10 16 30 H 0.10 0.46 7.84 -52.49 -0.41 0.05 16 31 H 0.12 0.35 8.06 -52.49 -0.42 -0.08 16 32 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 1.50 8.33 -40.82 -0.34 1.16 16 35 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -37.83 374.05 -6.35 -44.18 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.66 Total: 1.61 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.00 Total: -14.32 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 1.21 Total: -33.65 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.51 Total: -19.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.83 -6.35 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111945124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.704 kcal (2) G-P(sol) polarization free energy of solvation -37.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds