Wall clock time and date at job start Tue Mar 31 2020 15:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99916 * 2 1 4 4 N 1.46500 * 109.47010 * 125.00306 * 3 2 1 5 5 C 1.34776 * 120.00205 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99855 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99985 * 180.02562 * 5 4 3 8 8 H 1.09001 * 109.47272 * 59.99802 * 7 5 4 9 9 C 1.47201 * 109.47282 * 299.99428 * 7 5 4 10 10 N 5.61745 * 111.85481 * 65.00639 * 2 1 3 11 11 C 1.50703 * 109.46790 * 179.97438 * 7 5 4 12 12 O 1.20763 * 120.00180 * 29.99996 * 11 7 5 13 13 C 1.50700 * 119.99729 * 209.99804 * 11 7 5 14 14 C 1.50701 * 109.47133 * 180.02562 * 13 11 7 15 15 C 1.38302 * 119.93101 * 89.99638 * 14 13 11 16 16 C 1.38105 * 120.06695 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93200 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.07178 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99766 * 354.46580 * 18 17 16 20 20 H 1.08005 * 119.99910 * 5.05947 * 19 18 17 21 21 C 1.38653 * 120.00325 * 185.05796 * 19 18 17 22 22 N 1.31555 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00359 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47111 * 59.99485 * 23 21 19 25 25 H 1.48495 * 109.47007 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47035 * 299.99958 * 23 21 19 27 27 C 1.38880 * 119.86456 * 0.27348 * 17 16 15 28 28 C 1.38102 * 119.92774 * 359.49328 * 27 17 16 29 29 H 1.08000 * 119.99812 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00044 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00044 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47301 * 5.00409 * 3 2 1 33 33 H 1.09000 * 109.47200 * 245.00155 * 3 2 1 34 34 H 0.97005 * 120.00018 * 0.02562 * 4 3 2 35 35 H 1.08992 * 109.47190 * 59.99895 * 13 11 7 36 36 H 1.09000 * 109.47067 * 299.99775 * 13 11 7 37 37 H 1.08001 * 119.96675 * 0.02562 * 15 14 13 38 38 H 1.07996 * 120.03107 * 179.97438 * 16 15 14 39 39 H 0.97003 * 120.00171 * 179.97438 * 22 21 19 40 40 H 1.08001 * 120.03810 * 179.72208 * 27 17 16 41 41 H 1.07994 * 119.96815 * 180.22560 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3335 6 8 3.7144 3.3559 0.5784 7 6 4.7357 2.4362 2.4970 8 1 5.4409 1.6100 2.4067 9 6 3.9830 2.3036 3.7550 10 7 3.4011 2.2029 4.7255 11 6 5.4891 3.7414 2.4971 12 8 4.9699 4.7383 2.0556 13 6 6.8904 3.8024 3.0481 14 6 7.4148 5.2105 2.9325 15 6 7.2165 6.1078 3.9662 16 6 7.6954 7.3990 3.8630 17 6 8.3770 7.7960 2.7201 18 8 8.8494 9.0644 2.6159 19 6 8.5250 9.9215 3.6049 20 1 7.9850 9.5676 4.4707 21 6 8.8847 11.2573 3.5104 22 7 9.5429 11.6882 2.4561 23 14 8.4359 12.4446 4.8809 24 1 9.0603 11.9938 6.1506 25 1 8.9301 13.8029 4.5406 26 1 6.9600 12.4810 5.0408 27 6 8.5700 6.8942 1.6817 28 6 8.0930 5.6030 1.7929 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.0452 0.5743 1.7351 35 1 7.5329 3.1275 2.4827 36 1 6.8820 3.5032 4.0962 37 1 6.6866 5.7983 4.8550 38 1 7.5398 8.0993 4.6703 39 1 9.7942 12.6228 2.3898 40 1 9.0958 7.2013 0.7897 41 1 8.2459 4.9002 0.9873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111945124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:39 Heat of formation + Delta-G solvation = -41.802370 kcal Electronic energy + Delta-G solvation = -25810.948827 eV Core-core repulsion = 21850.042753 eV Total energy + Delta-G solvation = -3960.906074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.82726 -40.76941 -39.84506 -38.17396 -37.79112 -36.80836 -34.41302 -34.06633 -33.21752 -32.15515 -31.74869 -28.39157 -27.31675 -26.69204 -23.62520 -22.96666 -22.18219 -21.26563 -21.18917 -19.83376 -19.42862 -18.85637 -18.15906 -17.76783 -16.85948 -16.50422 -16.46306 -16.26212 -15.94274 -15.75874 -15.55914 -15.47533 -15.16341 -14.95958 -14.75434 -14.38213 -14.29831 -14.11686 -14.02524 -13.89942 -13.58807 -13.53421 -13.17420 -12.96404 -12.73746 -12.48228 -12.27885 -12.20720 -12.14240 -12.05802 -11.36072 -11.17366 -10.86368 -10.72102 -10.48060 -10.11843 -9.74594 -8.88569 -8.47692 -6.15792 0.63307 0.67080 0.75047 1.02982 1.22874 1.32489 1.43093 1.48456 1.49134 1.60064 2.16457 2.17408 2.70929 2.75899 2.97748 3.22317 3.52028 3.55367 3.84287 3.88876 4.06382 4.08949 4.17203 4.21126 4.45224 4.55131 4.56916 4.63091 4.75822 4.82873 4.84327 4.99276 5.13210 5.15333 5.23214 5.33071 5.59251 5.64366 5.73281 5.77333 5.78870 6.02959 6.18029 6.26984 6.34665 6.53739 6.96770 7.06248 7.78599 8.75462 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.002130 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.905738 B =13141.568908 C =13229.613326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.177 4.177 3 C 0.143 3.857 4 N -0.707 5.707 5 C 0.521 3.479 6 O -0.544 6.544 7 C -0.047 4.047 8 H 0.236 0.764 9 C 0.235 3.765 10 N -0.428 5.428 11 C 0.363 3.637 12 O -0.438 6.438 13 C -0.102 4.102 14 C -0.155 4.155 15 C -0.065 4.065 16 C -0.248 4.248 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.255 1.255 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.208 4.208 28 C -0.054 4.054 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.419 0.581 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.273 0.727 40 H 0.112 0.888 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 -31.287 -0.695 33.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.020 3.980 4 N -0.361 5.361 5 C 0.303 3.697 6 O -0.419 6.419 7 C -0.072 4.072 8 H 0.253 0.747 9 C -0.083 4.083 10 N -0.104 5.104 11 C 0.233 3.767 12 O -0.306 6.306 13 C -0.138 4.138 14 C -0.156 4.156 15 C -0.083 4.083 16 C -0.267 4.267 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.179 1.179 25 H -0.194 1.194 26 H -0.186 1.186 27 C -0.227 4.227 28 C -0.072 4.072 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.157 0.843 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.257 0.743 35 H 0.177 0.823 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.815 -29.902 -0.295 32.534 hybrid contribution 0.047 1.094 0.191 1.111 sum -12.768 -28.808 -0.104 31.511 Atomic orbital electron populations 1.24188 0.96059 1.03044 0.97173 1.22982 0.96146 0.97564 1.02807 1.20484 0.91542 0.96557 0.89408 1.45843 1.39676 1.19414 1.31130 1.19898 0.81395 0.82763 0.85600 1.90914 1.67380 1.35885 1.47703 1.19776 0.97450 1.05543 0.84395 0.74747 1.27729 0.93695 0.93490 0.93403 1.81359 1.08778 1.08633 1.11652 1.24550 0.89924 0.86927 0.75304 1.90607 1.69446 1.37704 1.32882 1.21113 0.92385 0.94161 1.06160 1.19424 1.04172 0.96940 0.95063 1.20978 0.96561 0.91646 0.99091 1.21230 1.07460 0.98887 0.99133 1.19987 0.93080 0.85878 0.95003 1.83934 1.66150 1.17158 1.46848 1.21758 1.38508 0.89512 0.99290 0.88406 1.26594 0.96184 0.98224 1.01139 1.70178 1.38410 1.16923 1.30343 0.84661 0.79106 0.76127 0.76389 1.17901 1.19360 1.18616 1.20503 1.09135 0.94780 0.98266 1.20981 0.94922 0.93744 0.97567 0.86136 0.88935 0.84260 0.92776 0.90407 0.74323 0.82251 0.84409 0.84613 0.86859 0.91831 0.87026 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 14.32 67.78 0.97 -0.16 16 2 C -0.18 -1.13 9.63 25.65 0.25 -0.88 16 3 C 0.14 1.65 6.11 85.63 0.52 2.17 16 4 N -0.71 -7.02 5.44 -466.78 -2.54 -9.56 16 5 C 0.52 8.64 7.07 87.66 0.62 9.26 16 6 O -0.54 -15.68 14.65 19.31 0.28 -15.40 16 7 C -0.05 -0.47 2.85 -14.09 -0.04 -0.51 16 8 H 0.24 -1.10 8.12 -2.39 -0.02 -1.12 16 9 C 0.24 3.33 14.39 89.44 1.29 4.61 16 10 N -0.43 -8.53 18.54 20.01 0.37 -8.16 16 11 C 0.36 6.96 6.04 29.10 0.18 7.14 16 12 O -0.44 -14.46 14.56 20.90 0.30 -14.16 16 13 C -0.10 -1.47 5.75 29.10 0.17 -1.30 16 14 C -0.16 -4.51 4.38 -19.83 -0.09 -4.60 16 15 C -0.06 -2.28 9.69 22.25 0.22 -2.06 16 16 C -0.25 -11.38 9.17 22.39 0.21 -11.18 16 17 C 0.11 5.78 6.65 22.58 0.15 5.93 16 18 O -0.23 -14.74 9.76 -22.78 -0.22 -14.96 16 19 C -0.41 -25.25 9.49 67.92 0.64 -24.60 16 20 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 21 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 22 N -0.92 -58.28 13.67 21.61 0.30 -57.98 16 23 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 24 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 27 C -0.21 -9.16 9.99 22.39 0.22 -8.94 16 28 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 29 H 0.12 0.44 8.06 -2.91 -0.02 0.41 16 30 H 0.09 0.77 7.84 -2.91 -0.02 0.75 16 31 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 32 H 0.05 0.86 7.79 -2.39 -0.02 0.84 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.42 1.31 8.33 -92.70 -0.77 0.53 16 35 H 0.16 0.77 8.08 -2.39 -0.02 0.76 16 36 H 0.14 1.18 8.08 -2.39 -0.02 1.16 16 37 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.11 5.35 5.64 -2.91 -0.02 5.33 16 39 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -95.68 374.05 6.81 -88.87 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.31 Total: 12.31 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 5.98 Total: -27.64 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.87 Total: -75.70 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: 0.36 Total: -44.52 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -95.68 6.81 -88.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111945124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.069 kcal (2) G-P(sol) polarization free energy of solvation -95.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds