Wall clock time and date at job start Tue Mar 31 2020 16:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47207 * 119.99812 * 2 1 3 5 5 H 1.07998 * 120.00092 * 116.69119 * 4 2 1 6 6 C 1.37877 * 119.99970 * 296.69708 * 4 2 1 7 7 N 1.31518 * 119.99869 * 352.38029 * 6 4 2 8 8 Si 1.86799 * 120.00092 * 172.65762 * 6 4 2 9 9 H 1.48504 * 109.47119 * 264.79864 * 8 6 4 10 10 H 1.48500 * 109.46950 * 24.79265 * 8 6 4 11 11 H 1.48495 * 109.47323 * 144.79340 * 8 6 4 12 12 O 1.45194 * 109.47239 * 239.99916 * 2 1 3 13 13 C 1.34234 * 117.00026 * 90.00510 * 12 2 1 14 14 O 1.20827 * 120.00001 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00166 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47168 * 179.97438 * 15 13 12 17 17 N 1.28388 * 119.10827 * 269.99795 * 16 15 13 18 18 C 1.31215 * 122.29505 * 179.97438 * 17 16 15 19 19 C 1.48355 * 119.87093 * 179.97438 * 18 17 16 20 20 C 1.39359 * 120.12138 * 179.72787 * 19 18 17 21 21 C 1.38013 * 119.87513 * 179.68476 * 20 19 18 22 22 C 1.38331 * 120.12249 * 0.60907 * 21 20 19 23 23 C 1.38319 * 120.24447 * 359.68751 * 22 21 20 24 24 C 1.38017 * 120.12858 * 359.97438 * 23 22 21 25 25 C 1.41449 * 120.25349 * 359.97438 * 18 17 16 26 26 C 1.36366 * 118.24162 * 0.02562 * 25 18 17 27 27 C 1.34615 * 119.10661 * 89.72734 * 16 15 13 28 28 O 1.22046 * 120.24637 * 0.02562 * 27 16 15 29 29 H 1.09001 * 109.47267 * 177.92378 * 1 2 3 30 30 H 1.08995 * 109.47232 * 297.93176 * 1 2 3 31 31 H 1.09001 * 109.47019 * 57.93111 * 1 2 3 32 32 H 0.97004 * 119.99840 * 180.27763 * 7 6 4 33 33 H 1.08999 * 109.46814 * 299.99407 * 15 13 12 34 34 H 1.08999 * 109.47096 * 59.99447 * 15 13 12 35 35 H 1.08005 * 120.06160 * 359.97438 * 20 19 18 36 36 H 1.07997 * 119.93672 * 180.32016 * 21 20 19 37 37 H 1.07995 * 119.87774 * 179.70295 * 22 21 20 38 38 H 1.08008 * 119.93529 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.06232 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.87960 * 180.02562 * 25 18 17 41 41 H 1.08005 * 121.04020 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6084 -1.6186 1.1323 6 6 1.7564 -0.2009 2.4816 7 7 1.1870 0.9787 2.6003 8 14 2.1983 -1.1825 4.0082 9 1 1.0147 -1.9590 4.4572 10 1 3.3107 -2.1142 3.6927 11 1 2.6206 -0.2550 5.0881 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0641 -2.2811 14 8 1.9975 1.2518 -2.2506 15 6 2.7184 -0.5772 -3.5495 16 7 2.8565 0.4436 -4.5912 17 7 1.8577 0.6919 -5.3587 18 6 1.9122 1.5929 -6.3110 19 6 0.7254 1.8358 -7.1673 20 6 0.7757 2.7955 -8.1765 21 6 -0.3293 3.0127 -8.9743 22 6 -1.4894 2.2887 -8.7656 23 6 -1.5469 1.3393 -7.7614 24 6 -0.4457 1.1088 -6.9620 25 6 3.0983 2.3335 -6.5242 26 6 4.1693 2.0829 -5.7181 27 6 4.0254 1.0998 -4.7141 28 8 4.9554 0.8444 -3.9661 29 1 -0.3634 -1.0270 -0.0372 30 1 -0.3633 0.4814 0.9079 31 1 -0.3633 0.5456 -0.8709 32 1 0.9965 1.3389 3.4806 33 1 3.6872 -1.0408 -3.3639 34 1 2.0089 -1.3369 -3.8774 35 1 1.6793 3.3649 -8.3370 36 1 -0.2896 3.7526 -9.7601 37 1 -2.3533 2.4653 -9.3892 38 1 -2.4552 0.7766 -7.6030 39 1 -0.4917 0.3670 -6.1785 40 1 3.1543 3.0778 -7.3047 41 1 5.0970 2.6222 -5.8408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:01 Heat of formation + Delta-G solvation = -24.917777 kcal Electronic energy + Delta-G solvation = -26885.669709 eV Core-core repulsion = 22925.495806 eV Total energy + Delta-G solvation = -3960.173903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -42.21194 -39.65260 -39.27595 -37.72783 -36.04743 -35.06458 -33.27886 -32.34937 -31.38065 -30.81652 -29.75004 -28.25067 -25.35393 -25.15459 -24.49297 -22.58232 -22.23890 -21.67936 -19.91998 -18.38424 -18.11184 -17.59723 -16.95920 -16.74763 -16.38935 -16.05663 -15.39900 -15.36297 -15.00510 -14.89978 -14.54062 -14.24986 -13.80019 -13.69180 -13.59884 -13.16198 -13.01974 -12.80143 -12.64855 -12.15046 -11.88537 -11.78570 -11.46447 -11.28417 -11.19454 -11.11997 -10.95154 -10.85113 -10.48062 -10.32867 -9.83544 -9.81578 -9.61192 -9.46655 -9.20812 -8.98108 -8.50950 -8.20699 -6.21663 -4.26616 0.28696 0.69705 1.15072 1.84700 1.93890 2.79397 3.13820 3.24398 3.30365 3.34642 3.55468 3.74195 3.77320 4.24104 4.32135 4.39374 4.54299 4.71514 4.76049 4.87977 5.04278 5.12403 5.16136 5.19334 5.26606 5.32662 5.41061 5.57146 5.64726 5.68515 5.82329 5.85751 6.18405 6.26838 6.28988 6.55011 6.67740 6.78163 6.81387 7.03126 7.49745 7.53181 7.62929 7.82192 8.01494 8.07041 8.49665 8.83220 9.37773 10.87502 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.002797 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.926446 B =10008.471910 C =11078.743775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.216 3.784 3 H 0.051 0.949 4 C -0.524 4.524 5 H 0.071 0.929 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.911 3.089 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.284 1.284 12 O -0.350 6.350 13 C 0.445 3.555 14 O -0.509 6.509 15 C 0.116 3.884 16 N -0.325 5.325 17 N -0.202 5.202 18 C 0.095 3.905 19 C -0.026 4.026 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.085 4.085 25 C -0.062 4.062 26 C -0.178 4.178 27 C 0.482 3.518 28 O -0.521 6.521 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 1.821 -25.537 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.562 4.562 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.738 3.262 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.210 1.210 12 O -0.265 6.265 13 C 0.286 3.714 14 O -0.399 6.399 15 C -0.005 4.005 16 N -0.145 5.145 17 N -0.025 5.025 18 C -0.073 4.073 19 C -0.028 4.028 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.105 4.105 25 C -0.085 4.085 26 C -0.208 4.208 27 C 0.280 3.720 28 O -0.398 6.398 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.495 1.470 -24.365 24.536 hybrid contribution 0.647 0.378 0.724 1.042 sum -1.848 1.849 -23.641 23.785 Atomic orbital electron populations 1.22090 0.97615 0.99853 1.01207 1.20710 0.91164 0.94380 0.77403 0.93091 1.20998 1.35603 1.10809 0.88745 0.91113 1.24911 0.95002 0.94888 0.99101 1.69979 1.42203 1.15889 1.24389 0.86267 0.78834 0.79638 0.81465 1.20329 1.19496 1.20981 1.86465 1.75706 1.43355 1.20984 1.23133 0.75603 0.86335 0.86360 1.90648 1.48126 1.16633 1.84451 1.21373 1.07114 0.88877 0.83173 1.46135 1.08777 1.33095 1.26451 1.70836 1.15028 1.15739 1.00915 1.20081 0.95006 0.96261 0.95956 1.18068 0.91392 0.98017 0.95281 1.21132 0.99145 0.97182 0.94781 1.21038 0.93065 1.00068 0.99683 1.21279 0.98021 0.96025 0.97864 1.21167 0.98531 0.98415 0.95656 1.21337 0.91742 0.98648 0.98767 1.22299 0.91401 0.96907 0.97903 1.22664 1.01741 1.00217 0.96168 1.18080 0.82975 0.83930 0.86968 1.91022 1.38040 1.65540 1.45149 0.94073 0.89371 0.96183 0.92360 0.83799 0.84322 0.85473 0.85615 0.85914 0.85571 0.84776 0.82883 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.39 37.16 0.35 -3.43 16 2 C 0.22 5.90 2.44 -27.88 -0.07 5.83 16 3 H 0.05 1.57 7.15 -51.93 -0.37 1.20 16 4 C -0.52 -14.93 8.85 -34.44 -0.30 -15.23 16 5 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16 6 C 0.06 1.78 5.21 -17.82 -0.09 1.69 16 7 N -0.89 -25.78 11.92 55.43 0.66 -25.12 16 8 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 O -0.35 -8.38 9.86 -39.27 -0.39 -8.77 16 13 C 0.45 9.61 7.99 36.01 0.29 9.90 16 14 O -0.51 -12.70 15.65 -18.75 -0.29 -12.99 16 15 C 0.12 1.83 6.14 -5.19 -0.03 1.80 16 16 N -0.32 -5.14 2.71 -64.51 -0.17 -5.31 16 17 N -0.20 -2.88 9.98 33.47 0.33 -2.55 16 18 C 0.10 1.13 6.82 -82.74 -0.56 0.57 16 19 C -0.03 -0.26 5.88 -104.90 -0.62 -0.88 16 20 C -0.10 -0.79 9.43 -39.25 -0.37 -1.16 16 21 C -0.12 -0.82 10.03 -39.63 -0.40 -1.22 16 22 C -0.11 -0.81 10.04 -39.52 -0.40 -1.20 16 23 C -0.12 -0.99 10.03 -39.63 -0.40 -1.39 16 24 C -0.09 -0.87 9.58 -39.25 -0.38 -1.24 16 25 C -0.06 -0.60 9.50 -39.03 -0.37 -0.98 16 26 C -0.18 -2.13 10.12 -39.11 -0.40 -2.53 16 27 C 0.48 7.91 7.46 -15.19 -0.11 7.80 16 28 O -0.52 -10.25 16.63 4.88 0.08 -10.17 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 2.37 6.60 -51.93 -0.34 2.02 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.14 2.07 7.37 -51.93 -0.38 1.69 16 34 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.13 0.65 6.22 -52.48 -0.33 0.32 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.13 1.42 7.55 -52.49 -0.40 1.03 16 40 H 0.15 0.84 6.29 -52.49 -0.33 0.51 16 41 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -36.02 360.48 -7.88 -43.90 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.65 Total: 0.94 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.86 Total: -1.69 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.82 Total: -32.98 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.60 Total: -31.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.02 -7.88 -43.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.987 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds