Wall clock time and date at job start Tue Mar 31 2020 16:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47207 * 119.99812 * 2 1 3 5 5 H 1.07998 * 120.00092 * 116.69119 * 4 2 1 6 6 C 1.37877 * 119.99970 * 296.69708 * 4 2 1 7 7 N 1.31518 * 119.99869 * 352.38029 * 6 4 2 8 8 Si 1.86799 * 120.00092 * 172.65762 * 6 4 2 9 9 H 1.48504 * 109.47119 * 264.79864 * 8 6 4 10 10 H 1.48500 * 109.46950 * 24.79265 * 8 6 4 11 11 H 1.48495 * 109.47323 * 144.79340 * 8 6 4 12 12 O 1.45194 * 109.47239 * 239.99916 * 2 1 3 13 13 C 1.34234 * 117.00026 * 90.00510 * 12 2 1 14 14 O 1.20827 * 120.00001 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00166 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47168 * 179.97438 * 15 13 12 17 17 N 1.28388 * 119.10827 * 269.99795 * 16 15 13 18 18 C 1.31215 * 122.29505 * 179.97438 * 17 16 15 19 19 C 1.48355 * 119.87093 * 179.97438 * 18 17 16 20 20 C 1.39359 * 120.12138 * 179.72787 * 19 18 17 21 21 C 1.38013 * 119.87513 * 179.68476 * 20 19 18 22 22 C 1.38331 * 120.12249 * 0.60907 * 21 20 19 23 23 C 1.38319 * 120.24447 * 359.68751 * 22 21 20 24 24 C 1.38017 * 120.12858 * 359.97438 * 23 22 21 25 25 C 1.41449 * 120.25349 * 359.97438 * 18 17 16 26 26 C 1.36366 * 118.24162 * 0.02562 * 25 18 17 27 27 C 1.34615 * 119.10661 * 89.72734 * 16 15 13 28 28 O 1.22046 * 120.24637 * 0.02562 * 27 16 15 29 29 H 1.09001 * 109.47267 * 177.92378 * 1 2 3 30 30 H 1.08995 * 109.47232 * 297.93176 * 1 2 3 31 31 H 1.09001 * 109.47019 * 57.93111 * 1 2 3 32 32 H 0.97004 * 119.99840 * 180.27763 * 7 6 4 33 33 H 1.08999 * 109.46814 * 299.99407 * 15 13 12 34 34 H 1.08999 * 109.47096 * 59.99447 * 15 13 12 35 35 H 1.08005 * 120.06160 * 359.97438 * 20 19 18 36 36 H 1.07997 * 119.93672 * 180.32016 * 21 20 19 37 37 H 1.07995 * 119.87774 * 179.70295 * 22 21 20 38 38 H 1.08008 * 119.93529 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.06232 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.87960 * 180.02562 * 25 18 17 41 41 H 1.08005 * 121.04020 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6084 -1.6186 1.1323 6 6 1.7564 -0.2009 2.4816 7 7 1.1870 0.9787 2.6003 8 14 2.1983 -1.1825 4.0082 9 1 1.0147 -1.9590 4.4572 10 1 3.3107 -2.1142 3.6927 11 1 2.6206 -0.2550 5.0881 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0641 -2.2811 14 8 1.9975 1.2518 -2.2506 15 6 2.7184 -0.5772 -3.5495 16 7 2.8565 0.4436 -4.5912 17 7 1.8577 0.6919 -5.3587 18 6 1.9122 1.5929 -6.3110 19 6 0.7254 1.8358 -7.1673 20 6 0.7757 2.7955 -8.1765 21 6 -0.3293 3.0127 -8.9743 22 6 -1.4894 2.2887 -8.7656 23 6 -1.5469 1.3393 -7.7614 24 6 -0.4457 1.1088 -6.9620 25 6 3.0983 2.3335 -6.5242 26 6 4.1693 2.0829 -5.7181 27 6 4.0254 1.0998 -4.7141 28 8 4.9554 0.8444 -3.9661 29 1 -0.3634 -1.0270 -0.0372 30 1 -0.3633 0.4814 0.9079 31 1 -0.3633 0.5456 -0.8709 32 1 0.9965 1.3389 3.4806 33 1 3.6872 -1.0408 -3.3639 34 1 2.0089 -1.3369 -3.8774 35 1 1.6793 3.3649 -8.3370 36 1 -0.2896 3.7526 -9.7601 37 1 -2.3533 2.4653 -9.3892 38 1 -2.4552 0.7766 -7.6030 39 1 -0.4917 0.3670 -6.1785 40 1 3.1543 3.0778 -7.3047 41 1 5.0970 2.6222 -5.8408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:00 Heat of formation + Delta-G solvation = -47.102238 kcal Electronic energy + Delta-G solvation = -26886.631700 eV Core-core repulsion = 22925.495806 eV Total energy + Delta-G solvation = -3961.135894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -43.31116 -41.34773 -40.10603 -38.85442 -37.85691 -36.20867 -35.39396 -33.23300 -32.38995 -31.83588 -31.40724 -29.42415 -27.49724 -26.17054 -25.52268 -23.95550 -23.00031 -22.82113 -21.73699 -19.41149 -19.32708 -19.13873 -18.56818 -17.79805 -17.77762 -17.43999 -17.12333 -16.83214 -16.27671 -15.90760 -15.58496 -15.23581 -14.90022 -14.76684 -14.60645 -14.49903 -14.32782 -14.07829 -13.91905 -13.68939 -13.50566 -13.24234 -13.05826 -12.82221 -12.66819 -12.54965 -12.21531 -12.13998 -12.07639 -11.89922 -11.71571 -11.43717 -11.09472 -10.91076 -10.66583 -10.31994 -9.80729 -9.17071 -8.36314 -6.51716 -0.63939 -0.11934 0.55247 0.78565 0.97703 1.05921 1.38957 1.41164 1.53073 1.80211 2.29806 2.40615 2.82949 2.95638 3.02402 3.37459 3.57671 3.63941 3.73977 3.90832 3.99081 4.16964 4.18331 4.30319 4.38343 4.43768 4.56347 4.58696 4.66513 4.67586 4.70840 4.87360 4.92652 5.00333 5.10445 5.21346 5.40002 5.48943 5.58257 5.61789 5.66615 5.74954 5.94888 6.09491 6.34572 6.50464 6.74068 6.98199 7.18800 8.73687 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.002797 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.926446 B =10008.471910 C =11078.743775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.985 3.015 9 H -0.263 1.263 10 H -0.264 1.264 11 H -0.279 1.279 12 O -0.353 6.353 13 C 0.440 3.560 14 O -0.548 6.548 15 C 0.127 3.873 16 N -0.335 5.335 17 N -0.239 5.239 18 C 0.107 3.893 19 C -0.054 4.054 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.039 4.039 26 C -0.189 4.189 27 C 0.463 3.537 28 O -0.574 6.574 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.272 0.728 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.207 0.793 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 2.316 -28.155 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.021 0.979 4 C -0.589 4.589 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.188 1.188 10 H -0.188 1.188 11 H -0.204 1.204 12 O -0.268 6.268 13 C 0.283 3.717 14 O -0.439 6.439 15 C 0.006 3.994 16 N -0.153 5.153 17 N -0.061 5.061 18 C -0.061 4.061 19 C -0.056 4.056 20 C -0.115 4.115 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.061 4.061 26 C -0.218 4.218 27 C 0.264 3.736 28 O -0.455 6.455 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.224 0.776 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.083 1.953 -27.026 27.271 hybrid contribution 0.671 0.366 1.287 1.497 sum -2.412 2.319 -25.739 25.955 Atomic orbital electron populations 1.21894 0.96240 1.00707 1.00444 1.20423 0.92224 0.92087 0.78835 0.97850 1.21288 1.36644 1.11172 0.89785 0.91134 1.25903 0.94405 0.95749 1.02326 1.70101 1.42674 1.17359 1.25512 0.85140 0.79106 0.78127 0.76865 1.18782 1.18810 1.20393 1.86450 1.76026 1.43264 1.21084 1.24318 0.74256 0.86052 0.87056 1.90613 1.49808 1.18446 1.85055 1.21465 1.08234 0.89202 0.80529 1.46074 1.09124 1.33484 1.26665 1.70892 1.14725 1.18039 1.02453 1.20772 0.96348 0.94562 0.94459 1.18211 0.90752 0.99947 0.96670 1.21508 1.00729 0.95959 0.93296 1.21475 0.92338 1.00139 0.99895 1.21678 0.99205 0.94797 0.97075 1.21373 0.98409 0.99228 0.95950 1.21382 0.92949 0.99035 0.99210 1.22794 0.89248 0.96359 0.97748 1.22896 1.03781 0.99615 0.95522 1.18876 0.82602 0.84572 0.87593 1.90977 1.39610 1.67471 1.47469 0.92339 0.91206 0.95650 0.91907 0.82709 0.80569 0.82335 0.82430 0.83402 0.84489 0.86561 0.77598 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.05 9.39 71.98 0.68 -6.38 16 2 C 0.22 12.46 2.44 29.85 0.07 12.53 16 3 H 0.00 0.24 7.15 -2.39 -0.02 0.22 16 4 C -0.55 -32.34 8.85 25.60 0.23 -32.11 16 5 H 0.07 4.03 7.82 -2.91 -0.02 4.01 16 6 C 0.02 0.91 5.21 84.65 0.44 1.36 16 7 N -0.92 -54.73 11.92 21.45 0.26 -54.48 16 8 Si 0.99 43.91 29.54 68.60 2.03 45.94 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 O -0.35 -17.68 9.86 -51.46 -0.51 -18.18 16 13 C 0.44 19.99 7.99 71.24 0.57 20.55 16 14 O -0.55 -28.99 15.65 21.96 0.34 -28.65 16 15 C 0.13 4.15 6.14 85.63 0.53 4.68 16 16 N -0.34 -10.94 2.71 -476.16 -1.29 -12.23 16 17 N -0.24 -6.92 9.98 -48.02 -0.48 -7.40 16 18 C 0.11 2.42 6.82 42.72 0.29 2.71 16 19 C -0.05 -1.00 5.88 -20.04 -0.12 -1.12 16 20 C -0.10 -1.09 9.43 22.49 0.21 -0.88 16 21 C -0.12 -1.12 10.03 22.24 0.22 -0.90 16 22 C -0.11 -1.19 10.04 22.31 0.22 -0.97 16 23 C -0.13 -1.99 10.03 22.24 0.22 -1.77 16 24 C -0.11 -2.12 9.58 22.49 0.22 -1.90 16 25 C -0.04 -0.65 9.50 22.62 0.21 -0.44 16 26 C -0.19 -4.31 10.12 22.57 0.23 -4.08 16 27 C 0.46 15.63 7.46 85.01 0.63 16.27 16 28 O -0.57 -23.80 16.63 -5.47 -0.09 -23.89 16 29 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.07 3.88 6.60 -2.39 -0.02 3.87 16 31 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.16 4.68 7.37 -2.39 -0.02 4.66 16 34 H 0.18 4.23 8.14 -2.39 -0.02 4.21 16 35 H 0.16 0.70 6.22 -2.91 -0.02 0.68 16 36 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 37 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.12 2.63 7.55 -2.91 -0.02 2.61 16 40 H 0.21 1.11 6.29 -2.91 -0.02 1.09 16 41 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -84.28 360.48 6.19 -78.10 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.07 Total: 13.23 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 4.86 Total: 7.56 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.51 Total: -74.11 kcal Atomic # 8 Polarization: -70.46 SS G_CDS: -0.25 Total: -70.72 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -84.28 6.19 -78.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.995 kcal (2) G-P(sol) polarization free energy of solvation -84.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds