Wall clock time and date at job start Tue Mar 31 2020 16:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35938 * 119.61598 * 2 1 4 4 C 1.35273 * 120.82702 * 180.02562 * 3 2 1 5 5 C 1.40200 * 120.03365 * 359.96901 * 4 3 2 6 6 C 1.36821 * 119.23365 * 0.02759 * 5 4 3 7 7 N 1.40146 * 120.40097 * 179.72837 * 6 5 4 8 8 C 1.34772 * 120.00429 * 120.39252 * 7 6 5 9 9 O 1.21310 * 119.99615 * 4.72057 * 8 7 6 10 10 C 1.50697 * 120.00491 * 184.71412 * 8 7 6 11 11 C 1.50695 * 109.47607 * 180.02562 * 10 8 7 12 12 C 1.38302 * 119.92955 * 269.73232 * 11 10 8 13 13 C 1.38098 * 120.06793 * 179.72360 * 12 11 10 14 14 C 1.38876 * 119.93164 * 0.56980 * 13 12 11 15 15 O 1.35751 * 120.07411 * 179.68749 * 14 13 12 16 16 C 1.34828 * 117.00225 * 185.55767 * 15 14 13 17 17 H 1.08001 * 120.00117 * 354.93261 * 16 15 14 18 18 C 1.38657 * 119.99770 * 174.93911 * 16 15 14 19 19 N 1.31558 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47049 * 89.99785 * 20 18 16 22 22 H 1.48494 * 109.47253 * 209.99861 * 20 18 16 23 23 H 1.48504 * 109.47284 * 329.99923 * 20 18 16 24 24 C 1.38883 * 119.85891 * 359.69827 * 14 13 12 25 25 C 1.38094 * 119.93244 * 0.02562 * 24 14 13 26 26 C 1.34675 * 119.61313 * 179.97438 * 2 1 3 27 27 O 1.22065 * 120.02965 * 0.03306 * 26 2 1 28 28 H 1.09007 * 109.46786 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46787 * 120.00813 * 1 2 3 30 30 H 1.09001 * 109.47176 * 240.01096 * 1 2 3 31 31 H 1.08002 * 119.59105 * 359.96566 * 3 2 1 32 32 H 1.07998 * 119.98437 * 179.97438 * 4 3 2 33 33 H 1.07992 * 120.38001 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99868 * 300.39535 * 7 6 5 35 35 H 1.09002 * 109.46792 * 300.00402 * 10 8 7 36 36 H 1.08998 * 109.46739 * 59.99855 * 10 8 7 37 37 H 1.08002 * 119.96508 * 359.97299 * 12 11 10 38 38 H 1.08005 * 120.03511 * 180.26582 * 13 12 11 39 39 H 0.97000 * 119.99649 * 180.02562 * 19 18 16 40 40 H 1.08008 * 120.03159 * 179.97438 * 24 14 13 41 41 H 1.08006 * 119.96439 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1818 0.0000 4 6 3.4892 1.2104 -0.0005 5 6 4.2165 0.0117 -0.0004 6 6 3.5423 -1.1788 -0.0004 7 7 4.2446 -2.3916 -0.0060 8 6 4.0755 -3.2730 0.9995 9 8 3.2529 -3.0561 1.8643 10 6 4.9082 -4.5281 1.0494 11 6 4.5262 -5.3365 2.2624 12 6 5.1848 -5.1344 3.4617 13 6 4.8332 -5.8697 4.5766 14 6 3.8253 -6.8210 4.4896 15 8 3.4817 -7.5498 5.5822 16 6 2.5778 -8.5339 5.4021 17 1 2.1011 -8.6601 4.4412 18 6 2.2602 -9.3839 6.4505 19 7 2.8412 -9.2305 7.6208 20 14 1.0074 -10.7469 6.2012 21 1 1.6997 -11.9774 5.7405 22 1 0.3122 -11.0211 7.4843 23 1 0.0145 -10.3260 5.1803 24 6 3.1696 -7.0254 3.2825 25 6 3.5219 -6.2830 2.1727 26 6 2.1305 -1.1708 0.0005 27 8 1.5136 -2.2241 0.0004 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5140 -0.8899 30 1 -0.3633 -0.5137 0.8901 31 1 1.5839 2.1096 -0.0006 32 1 4.0091 2.1570 -0.0009 33 1 5.2962 0.0280 -0.0004 34 1 4.8525 -2.5966 -0.7335 35 1 4.7310 -5.1176 0.1498 36 1 5.9635 -4.2618 1.1073 37 1 5.9721 -4.3981 3.5273 38 1 5.3450 -5.7084 5.5139 39 1 2.6193 -9.8255 8.3541 40 1 2.3856 -7.7649 3.2116 41 1 3.0121 -6.4413 1.2338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114347276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:48 Heat of formation + Delta-G solvation = -25.169041 kcal Electronic energy + Delta-G solvation = -26516.043556 eV Core-core repulsion = 22555.858757 eV Total energy + Delta-G solvation = -3960.184799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61900 -39.59240 -38.67948 -37.01039 -36.52072 -35.59656 -33.27627 -32.36517 -31.28628 -30.03800 -29.34708 -27.93922 -26.60573 -25.09899 -23.66839 -23.00607 -21.86050 -21.17540 -20.05733 -18.17952 -17.87731 -17.70595 -17.13105 -16.80489 -16.75772 -16.01893 -15.60066 -15.04180 -14.67310 -14.54954 -14.33492 -14.08334 -13.75297 -13.39613 -13.31916 -13.31248 -13.08193 -12.86091 -12.59995 -12.51368 -12.39680 -12.02852 -11.75748 -11.42402 -11.18457 -10.77335 -10.69903 -10.62408 -10.52562 -10.35000 -10.16308 -9.63659 -9.31649 -9.22508 -8.73644 -8.03155 -7.94553 -7.05622 -6.36393 -3.94531 0.51235 1.67417 2.25835 2.36840 2.41044 2.91318 3.17556 3.19644 3.24752 3.27513 3.45230 4.04708 4.25370 4.30578 4.64686 4.66097 4.82818 4.96559 4.98344 5.08800 5.20296 5.30390 5.34070 5.37206 5.42263 5.49708 5.72128 5.75683 5.85564 5.86734 5.95925 6.18093 6.32726 6.53222 6.55242 6.81356 6.83754 7.02901 7.15747 7.34260 7.45331 7.49376 7.55637 7.89234 7.95284 8.09570 8.46210 9.09608 9.81174 10.81994 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002452 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.398376 B =11417.080820 C =12134.440521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.500 5.500 3 C 0.123 3.877 4 C -0.222 4.222 5 C -0.042 4.042 6 C 0.033 3.967 7 N -0.675 5.675 8 C 0.511 3.489 9 O -0.493 6.493 10 C -0.075 4.075 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.192 4.192 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.232 4.232 25 C -0.054 4.054 26 C 0.512 3.488 27 O -0.518 6.518 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.407 0.593 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 22.380 -19.921 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.212 5.212 3 C -0.004 4.004 4 C -0.246 4.246 5 C -0.065 4.065 6 C -0.065 4.065 7 N -0.326 5.326 8 C 0.299 3.701 9 O -0.364 6.364 10 C -0.115 4.115 11 C -0.171 4.171 12 C -0.078 4.078 13 C -0.212 4.212 14 C 0.103 3.897 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.251 4.251 25 C -0.072 4.072 26 C 0.310 3.690 27 O -0.396 6.396 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.243 0.757 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.564 21.642 -18.756 28.682 hybrid contribution -0.403 -0.557 -0.555 0.884 sum 1.161 21.085 -19.311 28.616 Atomic orbital electron populations 1.22123 0.76953 1.03708 1.04765 1.45420 1.09208 1.06535 1.60079 1.21981 0.93956 0.89288 0.95186 1.20446 0.92392 0.98953 1.12811 1.21464 1.00887 0.90956 0.93235 1.18138 0.90272 0.87214 1.10849 1.43253 1.46060 1.17013 1.26262 1.21210 0.83740 0.84474 0.80709 1.90765 1.32935 1.75121 1.37540 1.20366 0.99301 0.92694 0.99132 1.18621 1.02591 1.01818 0.94060 1.20389 0.98309 0.97306 0.91796 1.20137 1.00970 1.00976 0.99080 1.19385 0.92027 0.91197 0.87047 1.83973 1.54571 1.41295 1.28447 1.21335 1.18242 1.07598 0.99410 0.89111 1.25276 0.98462 0.98254 0.94584 1.70046 1.41000 1.37370 1.01617 0.85719 0.79579 0.80046 0.78135 1.19914 1.20308 1.19207 1.21106 1.05155 1.05569 0.93285 1.20529 0.94920 0.94421 0.97332 1.17170 0.88713 0.83148 0.79990 1.91020 1.69269 1.29205 1.50115 0.89374 0.90190 0.89901 0.82096 0.83480 0.84572 0.75690 0.88886 0.88798 0.87383 0.86572 0.92131 0.85608 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.06 59.85 0.60 1.09 16 2 N -0.50 -4.96 2.99 -126.95 -0.38 -5.34 16 3 C 0.12 0.75 10.30 -16.79 -0.17 0.57 16 4 C -0.22 -1.33 10.00 -39.90 -0.40 -1.73 16 5 C -0.04 -0.34 10.01 -39.36 -0.39 -0.74 16 6 C 0.03 0.40 5.76 -83.45 -0.48 -0.08 16 7 N -0.67 -8.12 5.18 -9.72 -0.05 -8.17 16 8 C 0.51 8.22 7.33 -10.99 -0.08 8.14 16 9 O -0.49 -10.68 14.60 -12.19 -0.18 -10.86 16 10 C -0.07 -1.04 5.83 -29.04 -0.17 -1.21 16 11 C -0.17 -3.22 4.38 -104.58 -0.46 -3.67 16 12 C -0.06 -1.17 9.69 -39.61 -0.38 -1.56 16 13 C -0.19 -4.43 9.99 -39.40 -0.39 -4.82 16 14 C 0.16 4.11 6.65 -39.11 -0.26 3.85 16 15 O -0.18 -5.42 9.76 0.05 0.00 -5.42 16 16 C -0.39 -11.48 9.49 30.89 0.29 -11.18 16 17 H 0.09 2.50 5.20 -52.49 -0.27 2.23 16 18 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 19 N -0.86 -26.34 13.67 55.48 0.76 -25.58 16 20 Si 0.94 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.23 -5.57 9.17 -39.40 -0.36 -5.93 16 25 C -0.05 -1.12 9.69 -39.61 -0.38 -1.50 16 26 C 0.51 7.44 6.94 -15.19 -0.11 7.34 16 27 O -0.52 -9.91 15.37 -12.87 -0.20 -10.11 16 28 H 0.09 0.28 7.72 -51.93 -0.40 -0.12 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.16 0.28 7.82 -52.49 -0.41 -0.13 16 32 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.41 3.17 8.83 -40.82 -0.36 2.81 16 35 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.56 8.06 -52.48 -0.42 2.13 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.13 3.01 5.64 -52.48 -0.30 2.72 16 41 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -41.68 359.47 -7.57 -49.25 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.67 Total: 4.80 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.24 Total: -10.45 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.33 Total: -39.09 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.38 Total: -26.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -41.68 -7.57 -49.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114347276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.081 kcal (2) G-P(sol) polarization free energy of solvation -41.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds