Wall clock time and date at job start Tue Mar 31 2020 16:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35938 * 119.61598 * 2 1 4 4 C 1.35273 * 120.82702 * 180.02562 * 3 2 1 5 5 C 1.40200 * 120.03365 * 359.96901 * 4 3 2 6 6 C 1.36821 * 119.23365 * 0.02759 * 5 4 3 7 7 N 1.40146 * 120.40097 * 179.72837 * 6 5 4 8 8 C 1.34772 * 120.00429 * 120.39252 * 7 6 5 9 9 O 1.21310 * 119.99615 * 4.72057 * 8 7 6 10 10 C 1.50697 * 120.00491 * 184.71412 * 8 7 6 11 11 C 1.50695 * 109.47607 * 180.02562 * 10 8 7 12 12 C 1.38302 * 119.92955 * 269.73232 * 11 10 8 13 13 C 1.38098 * 120.06793 * 179.72360 * 12 11 10 14 14 C 1.38876 * 119.93164 * 0.56980 * 13 12 11 15 15 O 1.35751 * 120.07411 * 179.68749 * 14 13 12 16 16 C 1.34828 * 117.00225 * 185.55767 * 15 14 13 17 17 H 1.08001 * 120.00117 * 354.93261 * 16 15 14 18 18 C 1.38657 * 119.99770 * 174.93911 * 16 15 14 19 19 N 1.31558 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47049 * 89.99785 * 20 18 16 22 22 H 1.48494 * 109.47253 * 209.99861 * 20 18 16 23 23 H 1.48504 * 109.47284 * 329.99923 * 20 18 16 24 24 C 1.38883 * 119.85891 * 359.69827 * 14 13 12 25 25 C 1.38094 * 119.93244 * 0.02562 * 24 14 13 26 26 C 1.34675 * 119.61313 * 179.97438 * 2 1 3 27 27 O 1.22065 * 120.02965 * 0.03306 * 26 2 1 28 28 H 1.09007 * 109.46786 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46787 * 120.00813 * 1 2 3 30 30 H 1.09001 * 109.47176 * 240.01096 * 1 2 3 31 31 H 1.08002 * 119.59105 * 359.96566 * 3 2 1 32 32 H 1.07998 * 119.98437 * 179.97438 * 4 3 2 33 33 H 1.07992 * 120.38001 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99868 * 300.39535 * 7 6 5 35 35 H 1.09002 * 109.46792 * 300.00402 * 10 8 7 36 36 H 1.08998 * 109.46739 * 59.99855 * 10 8 7 37 37 H 1.08002 * 119.96508 * 359.97299 * 12 11 10 38 38 H 1.08005 * 120.03511 * 180.26582 * 13 12 11 39 39 H 0.97000 * 119.99649 * 180.02562 * 19 18 16 40 40 H 1.08008 * 120.03159 * 179.97438 * 24 14 13 41 41 H 1.08006 * 119.96439 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1818 0.0000 4 6 3.4892 1.2104 -0.0005 5 6 4.2165 0.0117 -0.0004 6 6 3.5423 -1.1788 -0.0004 7 7 4.2446 -2.3916 -0.0060 8 6 4.0755 -3.2730 0.9995 9 8 3.2529 -3.0561 1.8643 10 6 4.9082 -4.5281 1.0494 11 6 4.5262 -5.3365 2.2624 12 6 5.1848 -5.1344 3.4617 13 6 4.8332 -5.8697 4.5766 14 6 3.8253 -6.8210 4.4896 15 8 3.4817 -7.5498 5.5822 16 6 2.5778 -8.5339 5.4021 17 1 2.1011 -8.6601 4.4412 18 6 2.2602 -9.3839 6.4505 19 7 2.8412 -9.2305 7.6208 20 14 1.0074 -10.7469 6.2012 21 1 1.6997 -11.9774 5.7405 22 1 0.3122 -11.0211 7.4843 23 1 0.0145 -10.3260 5.1803 24 6 3.1696 -7.0254 3.2825 25 6 3.5219 -6.2830 2.1727 26 6 2.1305 -1.1708 0.0005 27 8 1.5136 -2.2241 0.0004 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5140 -0.8899 30 1 -0.3633 -0.5137 0.8901 31 1 1.5839 2.1096 -0.0006 32 1 4.0091 2.1570 -0.0009 33 1 5.2962 0.0280 -0.0004 34 1 4.8525 -2.5966 -0.7335 35 1 4.7310 -5.1176 0.1498 36 1 5.9635 -4.2618 1.1073 37 1 5.9721 -4.3981 3.5273 38 1 5.3450 -5.7084 5.5139 39 1 2.6193 -9.8255 8.3541 40 1 2.3856 -7.7649 3.2116 41 1 3.0121 -6.4413 1.2338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114347276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:45 Heat of formation + Delta-G solvation = -55.815823 kcal Electronic energy + Delta-G solvation = -26517.372500 eV Core-core repulsion = 22555.858757 eV Total energy + Delta-G solvation = -3961.513743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.41771 -41.00558 -40.28249 -38.28852 -37.89580 -36.60058 -34.43172 -34.12069 -32.79495 -31.80719 -30.22231 -28.60722 -28.17666 -27.03573 -24.52505 -23.76432 -23.66023 -22.59025 -21.40297 -19.86618 -19.07179 -18.78001 -18.51837 -17.99055 -17.63934 -16.84278 -16.59512 -16.54663 -16.28708 -15.87790 -15.70529 -15.54480 -15.30622 -15.12056 -14.73951 -14.42962 -14.19989 -14.12570 -13.69333 -13.60129 -13.45981 -13.07234 -12.98408 -12.82095 -12.71397 -12.48537 -12.31999 -12.28766 -12.13789 -11.59975 -11.21315 -11.05351 -10.90818 -10.75724 -10.21711 -9.79015 -8.93909 -8.70960 -8.49547 -6.17778 -0.14731 0.58846 0.64613 0.96816 1.31532 1.41360 1.49680 1.55462 1.85500 2.16069 2.32440 2.69103 2.83452 3.15823 3.49157 3.67431 3.84257 3.90984 4.02126 4.14061 4.15401 4.20045 4.29315 4.34152 4.44314 4.50318 4.57278 4.67499 4.71528 4.78311 4.83056 5.06273 5.11927 5.13130 5.26970 5.27958 5.53675 5.58492 5.68892 5.75818 5.77563 6.00694 6.10378 6.20115 6.56885 6.94761 7.02155 7.43165 7.75465 8.73984 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002452 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.398376 B =11417.080820 C =12134.440521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.501 5.501 3 C 0.130 3.870 4 C -0.224 4.224 5 C -0.006 4.006 6 C -0.033 4.033 7 N -0.653 5.653 8 C 0.509 3.491 9 O -0.563 6.563 10 C -0.073 4.073 11 C -0.146 4.146 12 C -0.055 4.055 13 C -0.204 4.204 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.416 4.416 17 H 0.097 0.903 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.245 4.245 25 C -0.063 4.063 26 C 0.487 3.513 27 O -0.592 6.592 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.215 0.785 32 H 0.192 0.808 33 H 0.167 0.833 34 H 0.425 0.575 35 H 0.123 0.877 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.274 0.726 40 H 0.115 0.885 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 26.186 -23.188 35.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.211 5.211 3 C 0.004 3.996 4 C -0.247 4.247 5 C -0.030 4.030 6 C -0.129 4.129 7 N -0.305 5.305 8 C 0.298 3.702 9 O -0.439 6.439 10 C -0.112 4.112 11 C -0.147 4.147 12 C -0.072 4.072 13 C -0.224 4.224 14 C 0.063 3.937 15 O -0.138 6.138 16 C -0.493 4.493 17 H 0.114 0.886 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.839 3.161 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.265 4.265 25 C -0.082 4.082 26 C 0.289 3.711 27 O -0.478 6.478 28 H 0.159 0.841 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.209 0.791 33 H 0.185 0.815 34 H 0.265 0.735 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.021 25.554 -22.127 33.938 hybrid contribution -0.696 -1.236 0.179 1.429 sum 2.325 24.319 -21.948 32.841 Atomic orbital electron populations 1.22302 0.76001 1.06547 1.03107 1.45570 1.10227 1.06830 1.58515 1.22987 0.94836 0.89413 0.92343 1.21081 0.92507 0.99799 1.11280 1.21942 1.02545 0.90104 0.88430 1.18306 0.89696 0.88411 1.16510 1.42897 1.45466 1.16585 1.25521 1.21439 0.82881 0.85242 0.80643 1.90751 1.35929 1.76790 1.40437 1.20502 1.01574 0.91570 0.97529 1.19250 0.99783 0.99829 0.95846 1.20894 0.98863 0.96827 0.90661 1.20461 1.00437 1.00825 1.00644 1.19925 0.94023 0.92451 0.87295 1.83931 1.56318 1.42987 1.30603 1.21807 1.18909 1.08337 1.00207 0.88605 1.26611 1.00684 1.00803 0.93891 1.70185 1.43543 1.39282 1.02839 0.84579 0.76602 0.76329 0.78604 1.18345 1.19189 1.18191 1.21194 1.05137 1.06236 0.93902 1.20895 0.95620 0.94446 0.97193 1.17739 0.89932 0.83525 0.79936 1.90957 1.70621 1.31726 1.54458 0.84086 0.90981 0.92658 0.76836 0.79119 0.81522 0.73464 0.85902 0.84030 0.82984 0.86533 0.91731 0.86754 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.06 127.77 1.28 2.14 16 2 N -0.50 -9.14 2.99 -673.67 -2.01 -11.16 16 3 C 0.13 0.98 10.30 83.37 0.86 1.83 16 4 C -0.22 -1.45 10.00 22.06 0.22 -1.23 16 5 C -0.01 -0.08 10.01 22.41 0.22 0.15 16 6 C -0.03 -0.75 5.76 38.20 0.22 -0.53 16 7 N -0.65 -14.41 5.18 -303.05 -1.57 -15.98 16 8 C 0.51 15.60 7.33 87.66 0.64 16.24 16 9 O -0.56 -24.72 14.60 13.82 0.20 -24.52 16 10 C -0.07 -1.76 5.83 29.10 0.17 -1.59 16 11 C -0.15 -5.30 4.38 -19.84 -0.09 -5.39 16 12 C -0.05 -2.08 9.69 22.25 0.22 -1.86 16 13 C -0.20 -9.74 9.99 22.39 0.22 -9.52 16 14 C 0.11 6.31 6.65 22.58 0.15 6.46 16 15 O -0.23 -15.12 9.76 -22.73 -0.22 -15.35 16 16 C -0.42 -26.24 9.49 67.92 0.64 -25.60 16 17 H 0.10 5.66 5.20 -2.91 -0.02 5.64 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 19 N -0.92 -59.24 13.67 21.61 0.30 -58.95 16 20 Si 1.02 45.77 29.55 68.60 2.03 47.80 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 C -0.25 -12.43 9.17 22.39 0.21 -12.22 16 25 C -0.06 -2.66 9.69 22.25 0.22 -2.45 16 26 C 0.49 14.26 6.94 84.98 0.59 14.85 16 27 O -0.59 -24.14 15.37 11.42 0.18 -23.96 16 28 H 0.14 0.36 7.72 -2.38 -0.02 0.34 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.22 -0.74 7.82 -2.91 -0.02 -0.77 16 32 H 0.19 -0.35 8.06 -2.91 -0.02 -0.37 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.43 5.35 8.83 -92.71 -0.82 4.53 16 35 H 0.12 2.34 8.08 -2.39 -0.02 2.32 16 36 H 0.14 2.16 8.08 -2.39 -0.02 2.14 16 37 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 39 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 40 H 0.11 5.89 5.64 -2.91 -0.02 5.87 16 41 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -105.80 359.47 5.40 -100.40 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.26 Total: 21.33 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 6.24 Total: -19.60 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -3.29 Total: -86.09 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: 0.16 Total: -63.83 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -105.80 5.40 -100.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114347276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.583 kcal (2) G-P(sol) polarization free energy of solvation -105.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds