Wall clock time and date at job start Tue Mar 31 2020 16:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34667 * 119.70339 * 2 1 4 4 O 1.21957 * 119.95771 * 359.97438 * 3 2 1 5 5 C 1.41248 * 120.08648 * 179.97438 * 3 2 1 6 6 C 1.36107 * 119.50570 * 0.02562 * 5 3 2 7 7 C 1.40408 * 119.42154 * 359.76647 * 6 5 3 8 8 C 1.36296 * 119.90182 * 0.48224 * 7 6 5 9 9 C 1.47882 * 119.75234 * 179.75778 * 8 7 6 10 10 O 1.21547 * 119.99707 * 185.31504 * 9 8 7 11 11 N 1.34771 * 120.00404 * 5.31735 * 9 8 7 12 12 C 1.46494 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47375 * 179.97438 * 12 11 9 14 14 C 1.38323 * 119.96751 * 270.02931 * 13 12 11 15 15 C 1.38282 * 120.13562 * 179.97438 * 14 13 12 16 16 C 1.38124 * 120.06845 * 359.76264 * 15 14 13 17 17 C 1.38859 * 119.93209 * 0.50779 * 16 15 14 18 18 O 1.35749 * 120.07012 * 179.73964 * 17 16 15 19 19 C 1.34831 * 116.99677 * 354.02970 * 18 17 16 20 20 H 1.07994 * 120.00608 * 5.03810 * 19 18 17 21 21 C 1.38662 * 119.99508 * 185.04161 * 19 18 17 22 22 N 1.31553 * 120.00181 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46947 * 60.00374 * 23 21 19 25 25 H 1.48497 * 109.47122 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47573 * 300.00276 * 23 21 19 27 27 C 1.38082 * 119.95882 * 90.00315 * 13 12 11 28 28 H 1.08996 * 109.46729 * 235.22568 * 1 2 3 29 29 H 1.08995 * 109.46844 * 355.22547 * 1 2 3 30 30 H 1.08997 * 109.46943 * 115.22743 * 1 2 3 31 31 H 1.07993 * 120.24448 * 180.02562 * 5 3 2 32 32 H 1.07999 * 120.28673 * 180.02562 * 6 5 3 33 33 H 1.08003 * 120.04874 * 180.27120 * 7 6 5 34 34 H 0.97006 * 119.99708 * 359.97438 * 11 9 8 35 35 H 1.09010 * 109.46904 * 60.00042 * 12 11 9 36 36 H 1.08994 * 109.47772 * 300.00545 * 12 11 9 37 37 H 1.07997 * 119.93246 * 359.97252 * 14 13 12 38 38 H 1.07998 * 119.96245 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.03429 * 180.27366 * 16 15 14 40 40 H 0.96996 * 120.00250 * 179.97438 * 22 21 19 41 41 H 1.07996 * 120.04018 * 0.04093 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5448 1.1792 0.0005 6 6 4.2230 -0.0009 0.0005 7 6 3.5064 -1.2083 0.0050 8 6 2.1436 -1.1896 -0.0007 9 6 1.3922 -2.4633 -0.0014 10 8 0.1811 -2.4543 -0.1040 11 7 2.0502 -3.6340 0.1116 12 6 1.3057 -4.8957 0.1115 13 6 2.2684 -6.0471 0.2486 14 6 2.8099 -6.6332 -0.8813 15 6 3.6940 -7.6895 -0.7596 16 6 4.0427 -8.1594 0.4916 17 6 3.4965 -7.5768 1.6276 18 8 3.8333 -8.0398 2.8584 19 6 4.6046 -9.1446 2.9068 20 1 4.9931 -9.5724 1.9945 21 6 4.8991 -9.7315 4.1281 22 7 4.4263 -9.2101 5.2395 23 14 5.9671 -11.2625 4.1952 24 1 7.2990 -10.9629 3.6108 25 1 6.1318 -11.6897 5.6078 26 1 5.3203 -12.3518 3.4203 27 6 2.6093 -6.5154 1.5020 28 1 -0.3632 -0.5861 0.8441 29 1 -0.3633 1.0241 0.0855 30 1 -0.3633 -0.4380 -0.9296 31 1 4.0825 2.1157 0.0010 32 1 5.3030 -0.0084 0.0014 33 1 4.0343 -2.1505 0.0094 34 1 3.0168 -3.6412 0.1931 35 1 0.7550 -4.9925 -0.8243 36 1 0.6062 -4.9050 0.9473 37 1 2.5417 -6.2651 -1.8605 38 1 4.1154 -8.1448 -1.6436 39 1 4.7367 -8.9815 0.5862 40 1 4.6319 -9.6209 6.0938 41 1 2.1860 -6.0575 2.3838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121264623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:26 Heat of formation + Delta-G solvation = -27.270410 kcal Electronic energy + Delta-G solvation = -26257.897267 eV Core-core repulsion = 22297.621346 eV Total energy + Delta-G solvation = -3960.275921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.82493 -39.85504 -39.12863 -37.12369 -36.87796 -35.37917 -34.36149 -32.43346 -31.61618 -30.14437 -29.19251 -27.84527 -26.38823 -25.40213 -24.58248 -22.87977 -21.84836 -21.28028 -20.98024 -18.71134 -17.77573 -17.60350 -17.26251 -17.02506 -16.56159 -16.07107 -15.64257 -15.47960 -15.12343 -14.92877 -14.61417 -14.51025 -14.15881 -13.73174 -13.65949 -13.33165 -13.04621 -12.82890 -12.75988 -12.57106 -12.43015 -12.34855 -12.00349 -11.76532 -11.47514 -11.01830 -10.94521 -10.82663 -10.56640 -10.51264 -10.43470 -10.06473 -9.51656 -9.34504 -8.96892 -8.38571 -8.35634 -7.44229 -6.56972 -4.16879 0.08396 1.31947 1.68400 2.13556 2.23433 2.53382 2.95199 3.05488 3.06981 3.09657 3.34876 3.85705 4.07726 4.26241 4.40194 4.48854 4.74480 4.81471 4.85996 4.97603 5.11456 5.23092 5.26385 5.39918 5.48075 5.57123 5.59406 5.65681 5.68993 5.74808 5.81603 5.95104 6.01097 6.10232 6.13849 6.42657 6.66583 6.69401 6.88480 7.04255 7.12167 7.17907 7.25853 7.58948 7.66438 7.75665 7.86504 8.88089 9.55103 10.60414 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002294 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.873512 B =12204.334778 C =12668.936873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.476 5.476 3 C 0.512 3.488 4 O -0.550 6.550 5 C -0.218 4.218 6 C -0.026 4.026 7 C -0.182 4.182 8 C 0.121 3.879 9 C 0.552 3.448 10 O -0.525 6.525 11 N -0.699 5.699 12 C 0.168 3.832 13 C -0.078 4.078 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.224 4.224 17 C 0.150 3.850 18 O -0.174 6.174 19 C -0.395 4.395 20 H 0.092 0.908 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.170 4.170 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.272 0.728 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 11.900 -11.312 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.188 5.188 3 C 0.314 3.686 4 O -0.432 6.432 5 C -0.241 4.241 6 C -0.047 4.047 7 C -0.207 4.207 8 C 0.010 3.990 9 C 0.336 3.664 10 O -0.403 6.403 11 N -0.351 5.351 12 C 0.047 3.953 13 C -0.079 4.079 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.243 4.243 17 C 0.096 3.904 18 O -0.077 6.077 19 C -0.471 4.471 20 H 0.110 0.890 21 C -0.164 4.164 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.190 4.190 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.708 12.585 -10.872 16.718 hybrid contribution 1.204 -1.029 0.059 1.585 sum -0.505 11.556 -10.813 15.834 Atomic orbital electron populations 1.22332 0.75897 1.04497 1.04999 1.45415 1.10035 1.05107 1.58227 1.17339 0.89335 0.82524 0.79437 1.90937 1.69911 1.29076 1.53295 1.22406 0.92600 1.00396 1.08666 1.21434 1.01233 0.91327 0.90703 1.20985 0.91153 1.00429 1.08094 1.20160 0.92437 0.86810 0.99625 1.17836 0.87095 0.83236 0.78191 1.90837 1.13117 1.87039 1.49283 1.46020 1.11627 1.05077 1.72409 1.20281 0.92773 0.79252 1.03031 1.19190 0.98672 0.96856 0.93141 1.20475 1.03405 1.00741 0.96816 1.20755 0.96511 0.95653 0.96423 1.21266 1.06004 1.04858 0.92196 1.19318 0.92227 0.92769 0.86123 1.83980 1.60649 1.40826 1.22262 1.21282 1.28092 1.02955 0.94776 0.89026 1.25305 0.97848 0.99076 0.94158 1.70017 1.41976 1.39389 0.97984 0.85774 0.79584 0.80051 0.78010 1.19435 1.20200 1.19426 1.20088 1.02253 0.99951 0.96664 0.89298 0.88933 0.89586 0.82863 0.83730 0.83060 0.75575 0.90273 0.90190 0.87419 0.87198 0.85404 0.91793 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 8.93 59.85 0.53 1.24 16 2 N -0.48 -5.56 3.02 -122.80 -0.37 -5.93 16 3 C 0.51 6.47 7.43 -15.17 -0.11 6.36 16 4 O -0.55 -8.71 16.39 4.96 0.08 -8.63 16 5 C -0.22 -2.03 10.00 -39.20 -0.39 -2.42 16 6 C -0.03 -0.18 10.08 -39.53 -0.40 -0.58 16 7 C -0.18 -1.42 9.49 -39.46 -0.37 -1.79 16 8 C 0.12 1.24 6.63 -82.33 -0.55 0.70 16 9 C 0.55 6.27 7.70 -12.31 -0.09 6.18 16 10 O -0.53 -7.18 13.21 5.32 0.07 -7.11 16 11 N -0.70 -7.33 5.49 -62.42 -0.34 -7.67 16 12 C 0.17 2.04 5.80 -5.19 -0.03 2.01 16 13 C -0.08 -1.14 5.25 -104.65 -0.55 -1.69 16 14 C -0.19 -2.79 9.70 -39.53 -0.38 -3.18 16 15 C -0.08 -1.19 10.04 -39.61 -0.40 -1.58 16 16 C -0.22 -4.32 9.17 -39.39 -0.36 -4.68 16 17 C 0.15 3.25 6.65 -39.11 -0.26 2.99 16 18 O -0.17 -4.62 9.76 0.05 0.00 -4.62 16 19 C -0.40 -10.36 9.49 30.89 0.29 -10.07 16 20 H 0.09 2.20 5.21 -52.49 -0.27 1.93 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.11 13.67 55.48 0.76 -23.35 16 23 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.17 -3.10 9.65 -39.39 -0.38 -3.48 16 28 H 0.09 0.99 7.06 -51.93 -0.37 0.62 16 29 H 0.09 1.03 6.88 -51.93 -0.36 0.67 16 30 H 0.09 0.93 7.38 -51.93 -0.38 0.55 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.15 0.83 6.33 -52.48 -0.33 0.50 16 34 H 0.41 3.60 6.47 -40.82 -0.26 3.34 16 35 H 0.08 0.91 8.09 -51.92 -0.42 0.49 16 36 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.13 2.50 5.64 -52.49 -0.30 2.20 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -32.29 353.63 -7.41 -39.69 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.36 Total: 6.89 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.55 Total: -9.03 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.05 Total: -36.95 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.15 Total: -20.36 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.29 -7.41 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121264623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.422 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds