Wall clock time and date at job start Tue Mar 31 2020 16:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34667 * 119.70339 * 2 1 4 4 O 1.21957 * 119.95771 * 359.97438 * 3 2 1 5 5 C 1.41248 * 120.08648 * 179.97438 * 3 2 1 6 6 C 1.36107 * 119.50570 * 0.02562 * 5 3 2 7 7 C 1.40408 * 119.42154 * 359.76647 * 6 5 3 8 8 C 1.36296 * 119.90182 * 0.48224 * 7 6 5 9 9 C 1.47882 * 119.75234 * 179.75778 * 8 7 6 10 10 O 1.21547 * 119.99707 * 185.31504 * 9 8 7 11 11 N 1.34771 * 120.00404 * 5.31735 * 9 8 7 12 12 C 1.46494 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47375 * 179.97438 * 12 11 9 14 14 C 1.38323 * 119.96751 * 270.02931 * 13 12 11 15 15 C 1.38282 * 120.13562 * 179.97438 * 14 13 12 16 16 C 1.38124 * 120.06845 * 359.76264 * 15 14 13 17 17 C 1.38859 * 119.93209 * 0.50779 * 16 15 14 18 18 O 1.35749 * 120.07012 * 179.73964 * 17 16 15 19 19 C 1.34831 * 116.99677 * 354.02970 * 18 17 16 20 20 H 1.07994 * 120.00608 * 5.03810 * 19 18 17 21 21 C 1.38662 * 119.99508 * 185.04161 * 19 18 17 22 22 N 1.31553 * 120.00181 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46947 * 60.00374 * 23 21 19 25 25 H 1.48497 * 109.47122 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47573 * 300.00276 * 23 21 19 27 27 C 1.38082 * 119.95882 * 90.00315 * 13 12 11 28 28 H 1.08996 * 109.46729 * 235.22568 * 1 2 3 29 29 H 1.08995 * 109.46844 * 355.22547 * 1 2 3 30 30 H 1.08997 * 109.46943 * 115.22743 * 1 2 3 31 31 H 1.07993 * 120.24448 * 180.02562 * 5 3 2 32 32 H 1.07999 * 120.28673 * 180.02562 * 6 5 3 33 33 H 1.08003 * 120.04874 * 180.27120 * 7 6 5 34 34 H 0.97006 * 119.99708 * 359.97438 * 11 9 8 35 35 H 1.09010 * 109.46904 * 60.00042 * 12 11 9 36 36 H 1.08994 * 109.47772 * 300.00545 * 12 11 9 37 37 H 1.07997 * 119.93246 * 359.97252 * 14 13 12 38 38 H 1.07998 * 119.96245 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.03429 * 180.27366 * 16 15 14 40 40 H 0.96996 * 120.00250 * 179.97438 * 22 21 19 41 41 H 1.07996 * 120.04018 * 0.04093 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5448 1.1792 0.0005 6 6 4.2230 -0.0009 0.0005 7 6 3.5064 -1.2083 0.0050 8 6 2.1436 -1.1896 -0.0007 9 6 1.3922 -2.4633 -0.0014 10 8 0.1811 -2.4543 -0.1040 11 7 2.0502 -3.6340 0.1116 12 6 1.3057 -4.8957 0.1115 13 6 2.2684 -6.0471 0.2486 14 6 2.8099 -6.6332 -0.8813 15 6 3.6940 -7.6895 -0.7596 16 6 4.0427 -8.1594 0.4916 17 6 3.4965 -7.5768 1.6276 18 8 3.8333 -8.0398 2.8584 19 6 4.6046 -9.1446 2.9068 20 1 4.9931 -9.5724 1.9945 21 6 4.8991 -9.7315 4.1281 22 7 4.4263 -9.2101 5.2395 23 14 5.9671 -11.2625 4.1952 24 1 7.2990 -10.9629 3.6108 25 1 6.1318 -11.6897 5.6078 26 1 5.3203 -12.3518 3.4203 27 6 2.6093 -6.5154 1.5020 28 1 -0.3632 -0.5861 0.8441 29 1 -0.3633 1.0241 0.0855 30 1 -0.3633 -0.4380 -0.9296 31 1 4.0825 2.1157 0.0010 32 1 5.3030 -0.0084 0.0014 33 1 4.0343 -2.1505 0.0094 34 1 3.0168 -3.6412 0.1931 35 1 0.7550 -4.9925 -0.8243 36 1 0.6062 -4.9050 0.9473 37 1 2.5417 -6.2651 -1.8605 38 1 4.1154 -8.1448 -1.6436 39 1 4.7367 -8.9815 0.5862 40 1 4.6319 -9.6209 6.0938 41 1 2.1860 -6.0575 2.3838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121264623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:25 Heat of formation + Delta-G solvation = -48.987501 kcal Electronic energy + Delta-G solvation = -26258.838991 eV Core-core repulsion = 22297.621346 eV Total energy + Delta-G solvation = -3961.217645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66727 -40.98986 -40.46919 -38.50922 -37.88625 -36.36464 -35.24449 -34.27021 -32.72669 -31.23491 -30.58047 -28.69080 -27.65414 -27.00411 -25.52576 -23.69150 -23.23445 -22.48851 -22.11885 -19.88780 -19.18183 -18.65884 -18.43872 -18.02750 -17.46154 -16.96947 -16.78601 -16.62782 -16.46620 -16.07626 -15.91846 -15.59387 -15.48998 -15.16584 -14.89589 -14.38661 -14.23410 -13.97294 -13.80483 -13.66203 -13.49007 -13.34582 -13.19455 -12.97011 -12.83966 -12.50442 -12.37187 -12.24251 -12.13626 -11.48974 -11.19371 -11.16772 -10.99674 -10.78018 -10.28545 -9.74329 -9.18698 -9.00478 -8.45251 -6.13411 -0.66811 0.37074 0.56517 0.73915 1.33576 1.37572 1.47412 1.53006 1.65692 2.03759 2.18971 2.56094 2.84867 3.14976 3.33121 3.41680 3.53568 3.80792 3.86268 4.10966 4.13057 4.20704 4.33562 4.36771 4.41038 4.43645 4.55459 4.65305 4.73235 4.76939 4.83574 4.94174 5.04134 5.12113 5.14454 5.16612 5.28992 5.37010 5.65027 5.72967 5.75209 5.83767 6.03560 6.19184 6.29268 6.78686 6.89079 7.00036 7.80556 8.77467 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002294 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.873512 B =12204.334778 C =12668.936873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.482 5.482 3 C 0.496 3.504 4 O -0.599 6.599 5 C -0.228 4.228 6 C -0.006 4.006 7 C -0.156 4.156 8 C 0.094 3.906 9 C 0.557 3.443 10 O -0.552 6.552 11 N -0.691 5.691 12 C 0.175 3.825 13 C -0.061 4.061 14 C -0.164 4.164 15 C -0.070 4.070 16 C -0.233 4.233 17 C 0.111 3.889 18 O -0.232 6.232 19 C -0.411 4.411 20 H 0.104 0.896 21 C -0.022 4.022 22 N -0.921 5.921 23 Si 1.015 2.985 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.258 1.258 27 C -0.178 4.178 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.417 0.583 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 11.625 -14.544 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.193 5.193 3 C 0.300 3.700 4 O -0.486 6.486 5 C -0.250 4.250 6 C -0.027 4.027 7 C -0.180 4.180 8 C -0.016 4.016 9 C 0.342 3.658 10 O -0.432 6.432 11 N -0.343 5.343 12 C 0.052 3.948 13 C -0.061 4.061 14 C -0.183 4.183 15 C -0.088 4.088 16 C -0.253 4.253 17 C 0.061 3.939 18 O -0.139 6.139 19 C -0.487 4.487 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.835 3.165 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.198 4.198 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.206 0.794 33 H 0.199 0.801 34 H 0.256 0.744 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.071 12.300 -14.170 18.764 hybrid contribution 0.562 -0.771 0.746 1.211 sum 0.633 11.529 -13.424 17.707 Atomic orbital electron populations 1.22218 0.76352 1.03848 1.04803 1.45422 1.10067 1.05571 1.58266 1.17930 0.90657 0.82079 0.79357 1.90902 1.70957 1.30572 1.56140 1.22562 0.90903 1.02260 1.09285 1.21879 1.03181 0.89776 0.87892 1.21492 0.90119 1.02152 1.04285 1.20178 0.93274 0.85716 1.02388 1.17929 0.86757 0.83615 0.77464 1.90832 1.14380 1.87384 1.50589 1.45802 1.12010 1.04276 1.72220 1.20171 0.92021 0.78832 1.03737 1.19380 0.97949 0.97019 0.91779 1.21020 1.00417 0.98534 0.98338 1.21163 0.96106 0.95575 0.95979 1.21391 1.05992 1.04803 0.93104 1.19881 0.93985 0.94282 0.85802 1.83946 1.62955 1.42083 1.24907 1.21761 1.28126 1.03335 0.95491 0.87895 1.26535 0.99399 1.02496 0.93558 1.70168 1.45199 1.41904 0.98645 0.84690 0.77992 0.75760 0.78096 1.17968 1.20048 1.18285 1.20246 1.01961 0.99417 0.98176 0.89715 0.89719 0.89523 0.81459 0.79413 0.80087 0.74398 0.88453 0.91006 0.83089 0.83490 0.86386 0.91937 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 8.93 127.77 1.14 2.71 16 2 N -0.48 -10.99 3.02 -660.61 -1.99 -12.99 16 3 C 0.50 12.38 7.43 85.00 0.63 13.01 16 4 O -0.60 -19.64 16.39 -5.18 -0.08 -19.72 16 5 C -0.23 -3.73 10.00 22.51 0.23 -3.50 16 6 C -0.01 -0.06 10.08 22.30 0.22 0.16 16 7 C -0.16 -1.79 9.49 22.35 0.21 -1.58 16 8 C 0.09 1.73 6.63 40.45 0.27 2.00 16 9 C 0.56 11.42 7.70 86.80 0.67 12.09 16 10 O -0.55 -14.44 13.21 -3.86 -0.05 -14.49 16 11 N -0.69 -12.16 5.49 -469.68 -2.58 -14.74 16 12 C 0.17 3.66 5.80 85.64 0.50 4.16 16 13 C -0.06 -1.58 5.25 -19.88 -0.10 -1.69 16 14 C -0.16 -3.83 9.70 22.30 0.22 -3.61 16 15 C -0.07 -1.92 10.04 22.25 0.22 -1.70 16 16 C -0.23 -8.77 9.17 22.39 0.21 -8.57 16 17 C 0.11 4.90 6.65 22.58 0.15 5.05 16 18 O -0.23 -13.01 9.76 -22.73 -0.22 -13.23 16 19 C -0.41 -22.49 9.49 67.92 0.64 -21.85 16 20 H 0.10 5.09 5.21 -2.91 -0.02 5.08 16 21 C -0.02 -1.21 5.49 84.84 0.47 -0.74 16 22 N -0.92 -54.62 13.67 21.62 0.30 -54.32 16 23 Si 1.02 40.75 29.55 68.60 2.03 42.78 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 25 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 27 C -0.18 -6.45 9.65 22.39 0.22 -6.24 16 28 H 0.08 1.96 7.06 -2.39 -0.02 1.94 16 29 H 0.08 2.03 6.88 -2.39 -0.02 2.01 16 30 H 0.09 1.91 7.38 -2.39 -0.02 1.90 16 31 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 33 H 0.18 0.98 6.33 -2.91 -0.02 0.96 16 34 H 0.42 5.62 6.47 -92.70 -0.60 5.02 16 35 H 0.10 1.79 8.09 -2.38 -0.02 1.77 16 36 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.12 4.60 5.64 -2.91 -0.02 4.58 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -77.87 353.63 3.77 -74.10 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.49 Total: 22.91 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.88 Total: -10.29 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -4.28 Total: -82.05 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.36 Total: -47.44 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -77.87 3.77 -74.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121264623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.115 kcal (2) G-P(sol) polarization free energy of solvation -77.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds