Wall clock time and date at job start Tue Mar 31 2020 14:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30377 * 126.19037 * 2 1 4 4 N 1.28659 * 109.52690 * 179.97438 * 3 2 1 5 5 C 1.31225 * 109.25188 * 0.02562 * 4 3 2 6 6 C 1.47865 * 126.38219 * 179.97438 * 5 4 3 7 7 C 1.39680 * 120.07217 * 180.02562 * 6 5 4 8 8 C 1.38071 * 120.15573 * 179.97438 * 7 6 5 9 9 C 1.38072 * 120.30719 * 359.74070 * 8 7 6 10 10 C 1.39698 * 120.13636 * 0.51571 * 9 8 7 11 11 C 1.47747 * 120.08379 * 179.76579 * 10 9 8 12 12 O 1.21464 * 120.00530 * 184.82405 * 11 10 9 13 13 O 1.34712 * 119.99661 * 4.82126 * 11 10 9 14 14 C 1.45202 * 117.00054 * 185.15554 * 13 11 10 15 15 C 1.53002 * 109.47069 * 175.25301 * 14 13 11 16 16 C 1.50700 * 115.54811 * 183.37692 * 15 14 13 17 17 H 1.07995 * 120.00151 * 114.59421 * 16 15 14 18 18 C 1.37884 * 119.99710 * 294.59425 * 16 15 14 19 19 N 1.31517 * 119.99757 * 171.48135 * 18 16 15 20 20 Si 1.86802 * 120.00062 * 351.47779 * 18 16 15 21 21 H 1.48498 * 109.47065 * 92.75913 * 20 18 16 22 22 H 1.48501 * 109.46839 * 212.76051 * 20 18 16 23 23 H 1.48506 * 109.46948 * 332.75676 * 20 18 16 24 24 C 1.53002 * 117.49930 * 37.70355 * 15 14 13 25 25 C 1.52997 * 117.49833 * 329.04178 * 15 14 13 26 26 C 1.39282 * 120.06857 * 0.02562 * 6 5 4 27 27 O 1.34418 * 126.18339 * 180.28937 * 2 1 3 28 28 H 1.09005 * 109.47143 * 89.97180 * 1 2 3 29 29 H 1.08997 * 109.47531 * 209.96646 * 1 2 3 30 30 H 1.09000 * 109.47512 * 329.97591 * 1 2 3 31 31 H 1.07998 * 119.92039 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.84667 * 180.02562 * 8 7 6 33 33 H 1.07998 * 119.93637 * 180.28214 * 9 8 7 34 34 H 1.08992 * 109.47618 * 295.25735 * 14 13 11 35 35 H 1.09005 * 109.46746 * 55.25949 * 14 13 11 36 36 H 0.97002 * 119.99628 * 179.97438 * 19 18 16 37 37 H 1.09002 * 117.49393 * 0.02562 * 24 15 14 38 38 H 1.08996 * 117.49505 * 145.01873 * 24 15 14 39 39 H 1.09000 * 117.50073 * 214.97550 * 25 15 14 40 40 H 1.09000 * 117.50292 * 359.97438 * 25 15 14 41 41 H 1.07996 * 120.14671 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0522 0.0000 4 7 3.5094 0.6833 0.0005 5 6 3.5686 -0.6276 0.0004 6 6 4.7975 -1.4501 0.0003 7 6 4.7068 -2.8439 -0.0005 8 6 5.8531 -3.6136 -0.0011 9 6 7.0960 -3.0123 -0.0063 10 6 7.2013 -1.6193 -0.0002 11 6 8.5319 -0.9771 -0.0006 12 8 8.6237 0.2304 0.0932 13 8 9.6435 -1.7310 -0.1049 14 6 10.9182 -1.0463 0.0170 15 6 12.0527 -2.0725 -0.0087 16 6 13.4385 -1.5143 0.1891 17 1 14.0068 -1.7788 1.0685 18 6 13.9808 -0.6658 -0.7528 19 7 15.1147 -0.0471 -0.5053 20 14 13.1051 -0.3952 -2.3805 21 1 12.2159 0.7893 -2.2732 22 1 14.1090 -0.1653 -3.4504 23 1 12.2944 -1.5945 -2.7118 24 6 11.9010 -3.2701 -0.9487 25 6 11.7623 -3.4613 0.5638 26 6 6.0478 -0.8365 0.0010 27 8 2.3005 -1.0849 -0.0055 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5133 30 1 -0.3634 0.8897 0.5142 31 1 3.7378 -3.3207 -0.0014 32 1 5.7772 -4.6909 -0.0020 33 1 7.9887 -3.6201 -0.0114 34 1 11.0382 -0.3511 -0.8138 35 1 10.9467 -0.4966 0.9579 36 1 15.4964 0.5495 -1.1681 37 1 10.9930 -3.3267 -1.5491 38 1 12.8035 -3.6545 -1.4238 39 1 12.5736 -3.9715 1.0829 40 1 10.7630 -3.6438 0.9591 41 1 6.1233 0.2408 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121537865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:07 Heat of formation + Delta-G solvation = 9.227973 kcal Electronic energy + Delta-G solvation = -26388.663581 eV Core-core repulsion = 22429.970348 eV Total energy + Delta-G solvation = -3958.693233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.52231 -40.47919 -39.07529 -37.14447 -36.55838 -35.38768 -33.92837 -32.23233 -31.88750 -31.63142 -28.31049 -27.58061 -25.67260 -24.73961 -24.18077 -22.80583 -22.18066 -21.54533 -20.78178 -19.10030 -18.53792 -17.82678 -17.22791 -16.88449 -16.59312 -16.11840 -16.00042 -15.50796 -15.34083 -14.79056 -14.59490 -14.20092 -13.96754 -13.93398 -13.47371 -13.37337 -13.02378 -12.86345 -12.74107 -12.64825 -12.34323 -12.14982 -11.98634 -11.69095 -11.26779 -11.16565 -10.96039 -10.59703 -10.50362 -10.46485 -10.28217 -10.12496 -9.61332 -9.49945 -9.14232 -8.98531 -8.68794 -8.41996 -6.23599 -4.26385 -0.00878 0.51228 1.20547 1.70332 2.04042 2.58242 2.87584 3.24637 3.31415 3.35236 3.41987 3.45589 3.88943 4.30550 4.33549 4.41425 4.54899 4.68945 4.71955 4.72577 4.81820 4.82453 4.96482 5.02639 5.06073 5.18692 5.31590 5.34105 5.49692 5.71840 5.78250 5.86429 5.91618 5.94237 6.01111 6.17460 6.27981 6.46356 6.54119 6.67275 6.91759 7.02947 7.17737 7.59947 7.90009 7.98963 8.38439 8.80232 9.38379 10.87022 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.002496 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.508082 B =11214.210860 C =11930.063993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.160 3.840 3 N -0.283 5.283 4 N -0.271 5.271 5 C 0.214 3.786 6 C -0.042 4.042 7 C -0.055 4.055 8 C -0.131 4.131 9 C -0.034 4.034 10 C -0.115 4.115 11 C 0.499 3.501 12 O -0.501 6.501 13 O -0.350 6.350 14 C 0.099 3.901 15 C -0.005 4.005 16 C -0.487 4.487 17 H 0.083 0.917 18 C 0.082 3.918 19 N -0.886 5.886 20 Si 0.861 3.139 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.245 1.245 24 C -0.186 4.186 25 C -0.173 4.173 26 C -0.007 4.007 27 O -0.221 6.221 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.268 0.732 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.959 -8.106 0.181 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 N -0.131 5.131 4 N -0.118 5.118 5 C 0.007 3.993 6 C -0.044 4.044 7 C -0.075 4.075 8 C -0.149 4.149 9 C -0.053 4.053 10 C -0.116 4.116 11 C 0.343 3.657 12 O -0.390 6.390 13 O -0.266 6.266 14 C 0.027 3.973 15 C -0.006 4.006 16 C -0.524 4.524 17 H 0.101 0.899 18 C -0.123 4.123 19 N -0.521 5.521 20 Si 0.687 3.313 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.168 1.168 24 C -0.223 4.223 25 C -0.210 4.210 26 C -0.026 4.026 27 O -0.101 6.101 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -28.378 -6.340 0.120 29.078 hybrid contribution -0.650 -0.698 -0.922 1.327 sum -29.028 -7.038 -0.802 29.880 Atomic orbital electron populations 1.20382 0.79891 1.05857 1.05378 1.28087 0.97823 0.79397 0.99678 1.74443 0.96000 1.25485 1.17132 1.74805 1.11932 1.08183 1.16843 1.25325 0.83346 0.90438 1.00228 1.16967 0.86409 0.91518 1.09482 1.21460 1.00028 0.91573 0.94442 1.21118 0.91236 1.00865 1.01652 1.21867 0.99196 0.93498 0.90707 1.19154 0.90740 0.93928 1.07768 1.20934 0.85454 0.85546 0.73808 1.90857 1.87891 1.15190 1.45096 1.86513 1.15613 1.42634 1.81834 1.23411 0.76251 0.95814 1.01859 1.19435 0.93237 0.86192 1.01745 1.20211 0.94991 1.28622 1.08550 0.89905 1.24999 0.94730 0.94166 0.98385 1.69900 1.19465 1.27587 1.35177 0.87090 0.80111 0.80042 0.84042 1.20219 1.21370 1.16802 1.23039 1.01010 1.06297 0.91987 1.22750 1.00441 1.01523 0.96256 1.21269 0.88694 1.01812 0.90847 1.84805 1.17022 1.38110 1.70210 0.88168 0.88769 0.87349 0.84498 0.83865 0.83075 0.91875 0.90601 0.92206 0.90863 0.89721 0.89843 0.90424 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.16 1.46 8.47 -12.90 -0.11 1.35 16 3 N -0.28 -3.61 12.22 32.58 0.40 -3.21 16 4 N -0.27 -3.85 11.91 32.07 0.38 -3.47 16 5 C 0.21 2.57 7.99 -13.87 -0.11 2.46 16 6 C -0.04 -0.46 5.87 -105.03 -0.62 -1.08 16 7 C -0.06 -0.45 9.72 -39.10 -0.38 -0.83 16 8 C -0.13 -1.00 10.02 -39.70 -0.40 -1.40 16 9 C -0.03 -0.35 9.61 -39.10 -0.38 -0.72 16 10 C -0.11 -1.54 5.87 -105.03 -0.62 -2.16 16 11 C 0.50 8.76 7.88 34.62 0.27 9.04 16 12 O -0.50 -10.32 16.13 -19.24 -0.31 -10.63 16 13 O -0.35 -6.49 7.73 -40.52 -0.31 -6.81 16 14 C 0.10 2.17 5.26 37.16 0.20 2.37 16 15 C -0.01 -0.12 1.38 -155.66 -0.22 -0.33 16 16 C -0.49 -13.25 9.38 -34.44 -0.32 -13.57 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 18 C 0.08 2.29 5.46 -17.82 -0.10 2.20 16 19 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 20 Si 0.86 21.10 25.12 -169.99 -4.27 16.83 16 21 H -0.28 -6.84 7.01 56.52 0.40 -6.45 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.24 -5.63 5.65 56.52 0.32 -5.31 16 24 C -0.19 -3.81 7.61 -26.69 -0.20 -4.02 16 25 C -0.17 -3.36 9.63 -26.69 -0.26 -3.62 16 26 C -0.01 -0.09 9.24 -38.76 -0.36 -0.45 16 27 O -0.22 -2.21 10.66 4.01 0.04 -2.17 16 28 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.14 0.78 7.92 -52.49 -0.42 0.37 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 1.45 7.61 -52.49 -0.40 1.05 16 34 H 0.06 1.48 5.26 -51.93 -0.27 1.21 16 35 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.40 7.77 -51.93 -0.40 0.99 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 40 H 0.08 1.33 7.55 -51.93 -0.39 0.94 16 41 H 0.16 2.20 7.46 -52.49 -0.39 1.81 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -33.73 358.20 -5.99 -39.72 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.88 Total: 0.48 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.21 Total: -10.57 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 1.55 Total: -32.26 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.58 Total: -19.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.27 Total: 16.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.73 -5.99 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121537865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.949 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds