Wall clock time and date at job start Tue Mar 31 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30377 * 126.19037 * 2 1 4 4 N 1.28659 * 109.52690 * 179.97438 * 3 2 1 5 5 C 1.31225 * 109.25188 * 0.02562 * 4 3 2 6 6 C 1.47865 * 126.38219 * 179.97438 * 5 4 3 7 7 C 1.39680 * 120.07217 * 180.02562 * 6 5 4 8 8 C 1.38071 * 120.15573 * 179.97438 * 7 6 5 9 9 C 1.38072 * 120.30719 * 359.74070 * 8 7 6 10 10 C 1.39698 * 120.13636 * 0.51571 * 9 8 7 11 11 C 1.47747 * 120.08379 * 179.76579 * 10 9 8 12 12 O 1.21464 * 120.00530 * 184.82405 * 11 10 9 13 13 O 1.34712 * 119.99661 * 4.82126 * 11 10 9 14 14 C 1.45202 * 117.00054 * 185.15554 * 13 11 10 15 15 C 1.53002 * 109.47069 * 175.25301 * 14 13 11 16 16 C 1.50700 * 115.54811 * 183.37692 * 15 14 13 17 17 H 1.07995 * 120.00151 * 114.59421 * 16 15 14 18 18 C 1.37884 * 119.99710 * 294.59425 * 16 15 14 19 19 N 1.31517 * 119.99757 * 171.48135 * 18 16 15 20 20 Si 1.86802 * 120.00062 * 351.47779 * 18 16 15 21 21 H 1.48498 * 109.47065 * 92.75913 * 20 18 16 22 22 H 1.48501 * 109.46839 * 212.76051 * 20 18 16 23 23 H 1.48506 * 109.46948 * 332.75676 * 20 18 16 24 24 C 1.53002 * 117.49930 * 37.70355 * 15 14 13 25 25 C 1.52997 * 117.49833 * 329.04178 * 15 14 13 26 26 C 1.39282 * 120.06857 * 0.02562 * 6 5 4 27 27 O 1.34418 * 126.18339 * 180.28937 * 2 1 3 28 28 H 1.09005 * 109.47143 * 89.97180 * 1 2 3 29 29 H 1.08997 * 109.47531 * 209.96646 * 1 2 3 30 30 H 1.09000 * 109.47512 * 329.97591 * 1 2 3 31 31 H 1.07998 * 119.92039 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.84667 * 180.02562 * 8 7 6 33 33 H 1.07998 * 119.93637 * 180.28214 * 9 8 7 34 34 H 1.08992 * 109.47618 * 295.25735 * 14 13 11 35 35 H 1.09005 * 109.46746 * 55.25949 * 14 13 11 36 36 H 0.97002 * 119.99628 * 179.97438 * 19 18 16 37 37 H 1.09002 * 117.49393 * 0.02562 * 24 15 14 38 38 H 1.08996 * 117.49505 * 145.01873 * 24 15 14 39 39 H 1.09000 * 117.50073 * 214.97550 * 25 15 14 40 40 H 1.09000 * 117.50292 * 359.97438 * 25 15 14 41 41 H 1.07996 * 120.14671 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0522 0.0000 4 7 3.5094 0.6833 0.0005 5 6 3.5686 -0.6276 0.0004 6 6 4.7975 -1.4501 0.0003 7 6 4.7068 -2.8439 -0.0005 8 6 5.8531 -3.6136 -0.0011 9 6 7.0960 -3.0123 -0.0063 10 6 7.2013 -1.6193 -0.0002 11 6 8.5319 -0.9771 -0.0006 12 8 8.6237 0.2304 0.0932 13 8 9.6435 -1.7310 -0.1049 14 6 10.9182 -1.0463 0.0170 15 6 12.0527 -2.0725 -0.0087 16 6 13.4385 -1.5143 0.1891 17 1 14.0068 -1.7788 1.0685 18 6 13.9808 -0.6658 -0.7528 19 7 15.1147 -0.0471 -0.5053 20 14 13.1051 -0.3952 -2.3805 21 1 12.2159 0.7893 -2.2732 22 1 14.1090 -0.1653 -3.4504 23 1 12.2944 -1.5945 -2.7118 24 6 11.9010 -3.2701 -0.9487 25 6 11.7623 -3.4613 0.5638 26 6 6.0478 -0.8365 0.0010 27 8 2.3005 -1.0849 -0.0055 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5133 30 1 -0.3634 0.8897 0.5142 31 1 3.7378 -3.3207 -0.0014 32 1 5.7772 -4.6909 -0.0020 33 1 7.9887 -3.6201 -0.0114 34 1 11.0382 -0.3511 -0.8138 35 1 10.9467 -0.4966 0.9579 36 1 15.4964 0.5495 -1.1681 37 1 10.9930 -3.3267 -1.5491 38 1 12.8035 -3.6545 -1.4238 39 1 12.5736 -3.9715 1.0829 40 1 10.7630 -3.6438 0.9591 41 1 6.1233 0.2408 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121537865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:06 Heat of formation + Delta-G solvation = -15.366836 kcal Electronic energy + Delta-G solvation = -26389.730092 eV Core-core repulsion = 22429.970348 eV Total energy + Delta-G solvation = -3959.759744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.32116 -41.77936 -40.11103 -38.76419 -37.37850 -36.97290 -34.65994 -34.34444 -32.70848 -32.32185 -29.32818 -28.90773 -27.52362 -25.61657 -25.32939 -23.60376 -23.17104 -22.96753 -21.93685 -20.95743 -19.65498 -18.62349 -18.58173 -18.31153 -17.74203 -17.53608 -17.10537 -16.71355 -16.48954 -16.15630 -15.52783 -15.37236 -14.93189 -14.91694 -14.85462 -14.52652 -14.28718 -13.82724 -13.63780 -13.58710 -13.51149 -13.15401 -13.06118 -12.95298 -12.90958 -12.65934 -12.21135 -12.06165 -12.03809 -11.96901 -11.80921 -11.52474 -11.37738 -11.01935 -10.65548 -10.32396 -10.21600 -9.79906 -8.40160 -6.45892 -0.79181 -0.41593 0.46707 0.93678 1.17218 1.27640 1.32841 1.44153 1.45059 1.54060 2.28310 2.56086 2.61962 2.89231 3.23448 3.27802 3.45905 3.60024 3.74477 3.87460 3.94197 4.01650 4.13093 4.19328 4.22515 4.26832 4.31007 4.45813 4.56065 4.56567 4.69972 4.73219 4.75367 4.94809 4.99092 5.04198 5.07569 5.13014 5.17876 5.32060 5.39540 5.56538 5.59626 5.61603 6.21499 6.55726 6.63244 7.09014 7.22071 8.74366 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.002496 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.508082 B =11214.210860 C =11930.063993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.179 3.821 3 N -0.331 5.331 4 N -0.316 5.316 5 C 0.210 3.790 6 C -0.049 4.049 7 C -0.032 4.032 8 C -0.110 4.110 9 C -0.027 4.027 10 C -0.135 4.135 11 C 0.498 3.502 12 O -0.544 6.544 13 O -0.337 6.337 14 C 0.111 3.889 15 C -0.041 4.041 16 C -0.487 4.487 17 H 0.044 0.956 18 C 0.030 3.970 19 N -0.935 5.935 20 Si 0.916 3.084 21 H -0.285 1.285 22 H -0.286 1.286 23 H -0.216 1.216 24 C -0.171 4.171 25 C -0.147 4.147 26 C -0.020 4.020 27 O -0.215 6.215 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.165 0.835 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.269 0.731 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.218 -12.100 -0.673 35.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.031 4.031 3 N -0.177 5.177 4 N -0.162 5.162 5 C 0.001 3.999 6 C -0.051 4.051 7 C -0.052 4.052 8 C -0.127 4.127 9 C -0.045 4.045 10 C -0.136 4.136 11 C 0.345 3.655 12 O -0.436 6.436 13 O -0.253 6.253 14 C 0.037 3.963 15 C -0.042 4.042 16 C -0.524 4.524 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.574 5.574 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.212 1.212 23 H -0.138 1.138 24 C -0.208 4.208 25 C -0.184 4.184 26 C -0.040 4.040 27 O -0.095 6.095 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.190 0.810 32 H 0.208 0.792 33 H 0.182 0.818 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -32.665 -10.353 -0.730 34.275 hybrid contribution 0.490 0.477 -0.545 0.874 sum -32.175 -9.877 -1.275 33.681 Atomic orbital electron populations 1.20809 0.75726 1.07688 1.07251 1.29246 0.99444 0.78350 0.96055 1.74370 0.96031 1.27336 1.19967 1.74724 1.13215 1.09837 1.18435 1.25435 0.84329 0.90052 1.00062 1.17036 0.85054 0.92865 1.10181 1.21906 1.02048 0.89897 0.91318 1.21588 0.89400 1.02888 0.98823 1.22092 1.01194 0.91645 0.89584 1.18889 0.87939 0.95438 1.11382 1.21736 0.86340 0.85230 0.72206 1.90840 1.88347 1.17146 1.47234 1.86467 1.14805 1.41861 1.82147 1.22857 0.77952 0.95118 1.00331 1.19238 0.91261 0.87673 1.06069 1.20371 0.97062 1.28143 1.06830 0.93765 1.25757 0.95322 0.94189 1.01733 1.70025 1.21521 1.29280 1.36526 0.86225 0.79112 0.80560 0.80095 1.21200 1.21207 1.13841 1.23043 1.01825 1.03148 0.92833 1.22839 1.02083 0.97749 0.95734 1.21047 0.89885 1.00663 0.92408 1.84817 1.16243 1.38125 1.70346 0.85972 0.86031 0.86313 0.81022 0.79240 0.81759 0.93818 0.92165 0.92195 0.88467 0.90246 0.89933 0.87265 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 71.23 0.75 0.56 16 2 C 0.18 2.95 8.47 88.32 0.75 3.70 16 3 N -0.33 -8.51 12.22 -165.33 -2.02 -10.53 16 4 N -0.32 -9.31 11.91 -166.30 -1.98 -11.29 16 5 C 0.21 4.88 7.99 87.33 0.70 5.57 16 6 C -0.05 -1.01 5.87 -20.13 -0.12 -1.12 16 7 C -0.03 -0.37 9.72 22.58 0.22 -0.15 16 8 C -0.11 -1.04 10.02 22.19 0.22 -0.81 16 9 C -0.03 -0.44 9.61 22.58 0.22 -0.22 16 10 C -0.14 -3.49 5.87 -20.13 -0.12 -3.61 16 11 C 0.50 17.60 7.88 70.34 0.55 18.16 16 12 O -0.54 -23.55 16.13 19.95 0.32 -23.23 16 13 O -0.34 -12.09 7.73 -56.21 -0.43 -12.52 16 14 C 0.11 4.89 5.26 71.98 0.38 5.27 16 15 C -0.04 -1.87 1.38 -52.93 -0.07 -1.95 16 16 C -0.49 -27.29 9.38 25.60 0.24 -27.05 16 17 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 18 C 0.03 1.72 5.46 84.66 0.46 2.18 16 19 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 20 Si 0.92 44.33 25.12 68.60 1.72 46.05 16 21 H -0.29 -14.16 7.01 99.48 0.70 -13.46 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.22 -9.35 5.65 99.48 0.56 -8.79 16 24 C -0.17 -6.53 7.61 30.62 0.23 -6.30 16 25 C -0.15 -5.35 9.63 30.62 0.29 -5.06 16 26 C -0.02 -0.53 9.24 22.80 0.21 -0.31 16 27 O -0.22 -3.79 10.66 -8.58 -0.09 -3.89 16 28 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.17 0.87 7.92 -2.91 -0.02 0.85 16 32 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 33 H 0.16 2.31 7.61 -2.91 -0.02 2.29 16 34 H 0.04 2.08 5.26 -2.39 -0.01 2.07 16 35 H 0.06 2.78 8.10 -2.38 -0.02 2.76 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.10 3.27 7.77 -2.39 -0.02 3.25 16 38 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.11 3.29 7.55 -2.39 -0.02 3.27 16 41 H 0.13 3.94 7.46 -2.91 -0.02 3.92 16 Total: -1.00 -80.82 358.20 3.65 -77.17 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.92 Total: 7.12 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.92 Total: -11.15 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.70 Total: -79.55 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.20 Total: -39.64 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.72 Total: 46.05 kcal Total: -80.82 3.65 -77.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121537865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.800 kcal (2) G-P(sol) polarization free energy of solvation -80.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds