Wall clock time and date at job start Tue Mar 31 2020 16:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47295 * 2 1 4 4 C 1.36690 * 119.99651 * 263.95568 * 3 2 1 5 5 H 1.08001 * 119.99982 * 143.04183 * 4 3 2 6 6 C 1.39155 * 119.99967 * 323.03828 * 4 3 2 7 7 N 1.31292 * 120.00078 * 339.06843 * 6 4 3 8 8 Si 1.86801 * 120.00050 * 159.06891 * 6 4 3 9 9 H 1.48496 * 109.47157 * 59.99838 * 8 6 4 10 10 H 1.48504 * 109.47447 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46956 * 299.99829 * 8 6 4 12 12 C 1.34774 * 120.00580 * 83.95189 * 3 2 1 13 13 O 1.21642 * 120.00623 * 184.69131 * 12 3 2 14 14 C 1.47314 * 119.99369 * 4.69206 * 12 3 2 15 15 C 1.36778 * 126.83832 * 174.93290 * 14 12 3 16 16 C 1.42134 * 103.78986 * 180.02562 * 15 14 12 17 17 C 1.48383 * 126.83523 * 179.97438 * 16 15 14 18 18 C 1.39395 * 120.24124 * 4.99454 * 17 16 15 19 19 C 1.37654 * 120.22828 * 180.15135 * 18 17 16 20 20 C 1.39445 * 120.39571 * 0.05043 * 19 18 17 21 21 C 1.39030 * 119.06596 * 359.65495 * 20 19 18 22 22 C 1.37495 * 120.90798 * 0.42961 * 21 20 19 23 23 C 1.51676 * 107.02402 * 180.69229 * 21 20 19 24 24 C 1.54701 * 101.91052 * 15.49282 * 23 21 20 25 25 O 1.36124 * 129.74237 * 179.34162 * 20 19 18 26 26 N 1.31009 * 106.32738 * 0.25898 * 16 15 14 27 27 O 1.20872 * 111.82270 * 359.53512 * 26 16 15 28 28 H 1.08996 * 109.47208 * 59.99975 * 1 2 3 29 29 H 1.09001 * 109.47429 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47182 * 300.00502 * 1 2 3 31 31 H 1.08998 * 109.46789 * 239.99515 * 2 1 3 32 32 H 1.09004 * 109.46673 * 119.99721 * 2 1 3 33 33 H 0.97006 * 119.99897 * 179.97438 * 7 6 4 34 34 H 1.08004 * 128.10431 * 0.03570 * 15 14 12 35 35 H 1.07998 * 119.89066 * 359.88193 * 18 17 16 36 36 H 1.08001 * 119.80294 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.06097 * 179.81086 * 22 21 20 38 38 H 1.09003 * 110.94096 * 133.64597 * 23 21 20 39 39 H 1.08999 * 110.93847 * 257.30346 * 23 21 20 40 40 H 1.08995 * 110.74548 * 92.97127 * 24 23 21 41 41 H 1.09003 * 110.74450 * 216.13294 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3637 1.9839 -1.1772 5 1 2.1516 3.0318 -1.3299 6 6 2.9887 1.2474 -2.1789 7 7 3.6117 0.1307 -1.8811 8 14 2.9411 1.8473 -3.9473 9 1 3.5804 3.1848 -4.0336 10 1 3.6746 0.8906 -4.8146 11 1 1.5299 1.9430 -4.3997 12 6 2.1271 2.0576 1.1606 13 8 2.4507 3.2302 1.1533 14 6 1.8541 1.3768 2.4382 15 6 2.0134 1.8949 3.6939 16 6 1.6134 0.8342 4.5513 17 6 1.5880 0.8510 6.0348 18 6 1.8838 2.0231 6.7289 19 6 1.8631 2.0375 8.1052 20 6 1.5477 0.8814 8.8182 21 6 1.2477 -0.2825 8.1194 22 6 1.2677 -0.3059 6.7448 23 6 0.9336 -1.3505 9.1495 24 6 0.7141 -0.5068 10.4275 25 8 1.4832 0.6785 10.1627 26 7 1.2775 -0.1632 3.7712 27 8 1.3985 0.1200 2.6024 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.0470 -0.3829 -2.5794 34 1 2.3614 2.8795 3.9695 35 1 2.1342 2.9219 6.1851 36 1 2.0930 2.9496 8.6360 37 1 1.0353 -1.2183 6.2159 38 1 0.0282 -1.8954 8.8821 39 1 1.7748 -2.0328 9.2722 40 1 -0.3408 -0.2626 10.5524 41 1 1.0945 -1.0293 11.3052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123139031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:52 Heat of formation + Delta-G solvation = 33.473174 kcal Electronic energy + Delta-G solvation = -26937.687138 eV Core-core repulsion = 22980.045256 eV Total energy + Delta-G solvation = -3957.641882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.40864 -41.27634 -38.55674 -37.86810 -35.32122 -33.78286 -32.95623 -32.36180 -31.25508 -29.76800 -29.59463 -29.42395 -25.68166 -24.31102 -23.52190 -22.99362 -22.43469 -21.70742 -21.30035 -19.50487 -17.65164 -17.54229 -17.25049 -16.81377 -16.53264 -16.32953 -15.88656 -15.28183 -14.62350 -14.33712 -14.31539 -13.85171 -13.73754 -13.51671 -13.39945 -13.21792 -13.02477 -12.93636 -12.60056 -12.14565 -12.04023 -11.94622 -11.82995 -11.50238 -11.37453 -11.17111 -11.06098 -10.86501 -10.57501 -10.47621 -10.23400 -10.01848 -9.18267 -9.11055 -9.04897 -8.91060 -8.05878 -7.71169 -6.56142 -4.15529 0.78791 1.13307 1.53707 2.54387 2.99750 3.12231 3.16640 3.18976 3.41906 3.65659 3.93495 4.05450 4.09806 4.13440 4.29010 4.56524 4.61667 4.67914 4.84293 4.97588 4.99843 5.11089 5.18286 5.36567 5.41956 5.46227 5.46451 5.63337 5.70163 5.87776 5.98065 6.08789 6.14411 6.18252 6.27784 6.29753 6.34068 6.41467 6.58936 6.82805 6.92145 7.16637 7.38387 7.99713 8.23401 8.54465 8.90866 9.11722 9.71431 10.46754 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.002450 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.105055 B =11423.656463 C =11902.856138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.089 3.911 3 N -0.404 5.404 4 C -0.311 4.311 5 H 0.100 0.900 6 C 0.042 3.958 7 N -0.852 5.852 8 Si 0.926 3.074 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.512 3.488 13 O -0.561 6.561 14 C -0.028 4.028 15 C -0.189 4.189 16 C 0.051 3.949 17 C -0.036 4.036 18 C -0.059 4.059 19 C -0.135 4.135 20 C 0.109 3.891 21 C -0.177 4.177 22 C -0.043 4.043 23 C -0.109 4.109 24 C 0.052 3.948 25 O -0.305 6.305 26 N -0.366 5.366 27 O 0.117 5.883 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.275 0.725 34 H 0.176 0.824 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -4.205 17.783 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.034 4.034 3 N -0.120 5.120 4 C -0.439 4.439 5 H 0.118 0.882 6 C -0.166 4.166 7 N -0.488 5.488 8 Si 0.752 3.248 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.195 1.195 12 C 0.299 3.701 13 O -0.446 6.446 14 C -0.093 4.093 15 C -0.212 4.212 16 C -0.104 4.104 17 C -0.037 4.037 18 C -0.078 4.078 19 C -0.154 4.154 20 C 0.063 3.937 21 C -0.178 4.178 22 C -0.062 4.062 23 C -0.146 4.146 24 C -0.023 4.023 25 O -0.219 6.219 26 N -0.070 5.070 27 O 0.048 5.952 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.193 0.807 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.924 -4.932 18.029 19.608 hybrid contribution 0.269 0.619 -0.730 0.994 sum -5.654 -4.313 17.299 18.703 Atomic orbital electron populations 1.22143 0.97277 1.00892 1.01419 1.21847 0.92461 0.84583 1.04535 1.43497 1.51772 1.12097 1.04619 1.19527 1.37617 0.97311 0.89480 0.88207 1.25536 0.93701 0.96208 1.01119 1.69886 1.28724 1.15670 1.34484 0.86002 0.78865 0.78990 0.80987 1.19350 1.20716 1.19461 1.16895 0.85176 0.87458 0.80612 1.90692 1.53904 1.15097 1.84859 1.25088 1.00713 0.84946 0.98597 1.22619 1.07128 1.01511 0.89969 1.21657 1.03375 0.91153 0.94205 1.17503 1.04160 0.94258 0.87741 1.20903 0.96594 0.97630 0.92722 1.20138 1.06200 0.96168 0.92882 1.19689 0.96766 0.94251 0.83012 1.20628 1.07866 0.95034 0.94273 1.20316 0.96322 0.98071 0.91535 1.21794 1.03535 0.97140 0.92165 1.23831 0.96310 0.83656 0.98535 1.86813 1.69356 1.45860 1.19836 1.73904 1.19462 1.23463 0.90160 1.85182 1.61664 1.28422 1.19960 0.92401 0.92539 0.93910 0.86974 0.91677 0.91480 0.80698 0.84186 0.84812 0.85012 0.88915 0.89032 0.90468 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.81 37.16 0.36 -2.58 16 2 C 0.09 1.95 5.23 -4.04 -0.02 1.93 16 3 N -0.40 -10.11 2.53 -116.09 -0.29 -10.40 16 4 C -0.31 -8.24 8.93 -15.05 -0.13 -8.37 16 5 H 0.10 2.72 7.71 -52.49 -0.40 2.31 16 6 C 0.04 1.04 4.91 -17.44 -0.09 0.96 16 7 N -0.85 -21.85 11.48 55.51 0.64 -21.21 16 8 Si 0.93 19.38 29.60 -169.99 -5.03 14.35 16 9 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 C 0.51 12.72 7.57 -12.57 -0.10 12.63 16 13 O -0.56 -15.39 16.75 5.24 0.09 -15.30 16 14 C -0.03 -0.58 6.71 -36.42 -0.24 -0.83 16 15 C -0.19 -3.46 10.31 -38.62 -0.40 -3.86 16 16 C 0.05 0.88 7.05 -82.55 -0.58 0.30 16 17 C -0.04 -0.51 5.88 -104.83 -0.62 -1.13 16 18 C -0.06 -0.72 9.57 -39.36 -0.38 -1.10 16 19 C -0.14 -1.53 10.05 -39.35 -0.40 -1.92 16 20 C 0.11 1.28 7.04 -38.84 -0.27 1.01 16 21 C -0.18 -2.04 6.26 -104.12 -0.65 -2.69 16 22 C -0.04 -0.57 9.69 -39.40 -0.38 -0.95 16 23 C -0.11 -0.87 7.12 -26.51 -0.19 -1.05 16 24 C 0.05 0.37 8.01 38.05 0.30 0.67 16 25 O -0.30 -3.33 11.10 -20.13 -0.22 -3.55 16 26 N -0.37 -6.79 11.80 33.39 0.39 -6.39 16 27 O 0.12 2.31 6.97 15.43 0.11 2.42 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.79 7.29 -51.93 -0.38 0.41 16 31 H 0.11 2.62 5.54 -51.93 -0.29 2.33 16 32 H 0.07 1.39 5.31 -51.93 -0.28 1.12 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.25 16 34 H 0.18 2.84 7.60 -52.48 -0.40 2.44 16 35 H 0.14 1.49 7.25 -52.49 -0.38 1.11 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.70 7.91 -52.49 -0.42 1.29 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -30.42 349.51 -7.47 -37.89 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.63 Total: 3.91 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.78 Total: -6.98 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.74 Total: -38.01 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.03 Total: -16.43 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.42 -7.47 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123139031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.363 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds