Wall clock time and date at job start Tue Mar 31 2020 16:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47295 * 2 1 4 4 C 1.36690 * 119.99651 * 263.95568 * 3 2 1 5 5 H 1.08001 * 119.99982 * 143.04183 * 4 3 2 6 6 C 1.39155 * 119.99967 * 323.03828 * 4 3 2 7 7 N 1.31292 * 120.00078 * 339.06843 * 6 4 3 8 8 Si 1.86801 * 120.00050 * 159.06891 * 6 4 3 9 9 H 1.48496 * 109.47157 * 59.99838 * 8 6 4 10 10 H 1.48504 * 109.47447 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46956 * 299.99829 * 8 6 4 12 12 C 1.34774 * 120.00580 * 83.95189 * 3 2 1 13 13 O 1.21642 * 120.00623 * 184.69131 * 12 3 2 14 14 C 1.47314 * 119.99369 * 4.69206 * 12 3 2 15 15 C 1.36778 * 126.83832 * 174.93290 * 14 12 3 16 16 C 1.42134 * 103.78986 * 180.02562 * 15 14 12 17 17 C 1.48383 * 126.83523 * 179.97438 * 16 15 14 18 18 C 1.39395 * 120.24124 * 4.99454 * 17 16 15 19 19 C 1.37654 * 120.22828 * 180.15135 * 18 17 16 20 20 C 1.39445 * 120.39571 * 0.05043 * 19 18 17 21 21 C 1.39030 * 119.06596 * 359.65495 * 20 19 18 22 22 C 1.37495 * 120.90798 * 0.42961 * 21 20 19 23 23 C 1.51676 * 107.02402 * 180.69229 * 21 20 19 24 24 C 1.54701 * 101.91052 * 15.49282 * 23 21 20 25 25 O 1.36124 * 129.74237 * 179.34162 * 20 19 18 26 26 N 1.31009 * 106.32738 * 0.25898 * 16 15 14 27 27 O 1.20872 * 111.82270 * 359.53512 * 26 16 15 28 28 H 1.08996 * 109.47208 * 59.99975 * 1 2 3 29 29 H 1.09001 * 109.47429 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47182 * 300.00502 * 1 2 3 31 31 H 1.08998 * 109.46789 * 239.99515 * 2 1 3 32 32 H 1.09004 * 109.46673 * 119.99721 * 2 1 3 33 33 H 0.97006 * 119.99897 * 179.97438 * 7 6 4 34 34 H 1.08004 * 128.10431 * 0.03570 * 15 14 12 35 35 H 1.07998 * 119.89066 * 359.88193 * 18 17 16 36 36 H 1.08001 * 119.80294 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.06097 * 179.81086 * 22 21 20 38 38 H 1.09003 * 110.94096 * 133.64597 * 23 21 20 39 39 H 1.08999 * 110.93847 * 257.30346 * 23 21 20 40 40 H 1.08995 * 110.74548 * 92.97127 * 24 23 21 41 41 H 1.09003 * 110.74450 * 216.13294 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3637 1.9839 -1.1772 5 1 2.1516 3.0318 -1.3299 6 6 2.9887 1.2474 -2.1789 7 7 3.6117 0.1307 -1.8811 8 14 2.9411 1.8473 -3.9473 9 1 3.5804 3.1848 -4.0336 10 1 3.6746 0.8906 -4.8146 11 1 1.5299 1.9430 -4.3997 12 6 2.1271 2.0576 1.1606 13 8 2.4507 3.2302 1.1533 14 6 1.8541 1.3768 2.4382 15 6 2.0134 1.8949 3.6939 16 6 1.6134 0.8342 4.5513 17 6 1.5880 0.8510 6.0348 18 6 1.8838 2.0231 6.7289 19 6 1.8631 2.0375 8.1052 20 6 1.5477 0.8814 8.8182 21 6 1.2477 -0.2825 8.1194 22 6 1.2677 -0.3059 6.7448 23 6 0.9336 -1.3505 9.1495 24 6 0.7141 -0.5068 10.4275 25 8 1.4832 0.6785 10.1627 26 7 1.2775 -0.1632 3.7712 27 8 1.3985 0.1200 2.6024 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.0470 -0.3829 -2.5794 34 1 2.3614 2.8795 3.9695 35 1 2.1342 2.9219 6.1851 36 1 2.0930 2.9496 8.6360 37 1 1.0353 -1.2183 6.2159 38 1 0.0282 -1.8954 8.8821 39 1 1.7748 -2.0328 9.2722 40 1 -0.3408 -0.2626 10.5524 41 1 1.0945 -1.0293 11.3052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123139031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:51 Heat of formation + Delta-G solvation = 16.510769 kcal Electronic energy + Delta-G solvation = -26938.422683 eV Core-core repulsion = 22980.045256 eV Total energy + Delta-G solvation = -3958.377427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.89332 -42.08335 -40.44976 -38.81148 -37.20521 -35.14564 -34.23461 -33.73236 -32.81346 -31.36177 -30.78528 -30.22988 -27.55453 -25.41738 -24.81386 -24.38323 -23.67566 -23.04655 -22.42335 -20.95805 -19.25455 -18.78473 -18.47129 -18.37294 -17.55486 -17.43881 -17.16268 -16.97100 -16.25261 -15.89167 -15.60613 -15.19806 -14.96825 -14.76634 -14.66633 -14.28921 -14.16592 -14.08223 -13.71999 -13.68193 -13.64966 -13.17730 -12.92618 -12.77357 -12.66660 -12.65533 -12.41652 -12.35757 -12.11419 -11.86602 -11.84602 -11.23228 -10.98160 -10.87217 -10.71297 -10.00392 -9.63577 -9.04664 -8.47228 -6.17265 -0.33990 -0.01824 0.22869 1.28153 1.43495 1.46267 1.55242 1.78727 2.16069 2.24522 2.28660 2.66984 2.76696 2.89602 2.94513 3.27372 3.54031 3.68617 3.83371 3.95478 4.03674 4.14622 4.20067 4.22591 4.27068 4.39869 4.53384 4.54552 4.62490 4.73468 4.79834 4.81165 4.86606 5.01352 5.01857 5.14091 5.18427 5.25788 5.37310 5.38590 5.43606 5.48236 6.06020 6.08690 6.31819 6.92100 7.03623 7.21117 7.78820 8.55816 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.002450 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.105055 B =11423.656463 C =11902.856138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.092 3.908 3 N -0.415 5.415 4 C -0.348 4.348 5 H 0.080 0.920 6 C 0.010 3.990 7 N -0.875 5.875 8 Si 0.992 3.008 9 H -0.272 1.272 10 H -0.270 1.270 11 H -0.260 1.260 12 C 0.505 3.495 13 O -0.600 6.600 14 C -0.053 4.053 15 C -0.173 4.173 16 C 0.069 3.931 17 C -0.067 4.067 18 C -0.056 4.056 19 C -0.138 4.138 20 C 0.108 3.892 21 C -0.183 4.183 22 C -0.050 4.050 23 C -0.108 4.108 24 C 0.047 3.953 25 O -0.317 6.317 26 N -0.372 5.372 27 O 0.108 5.892 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.282 0.718 34 H 0.195 0.805 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 -4.998 19.754 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 N -0.130 5.130 4 C -0.476 4.476 5 H 0.098 0.902 6 C -0.195 4.195 7 N -0.511 5.511 8 Si 0.814 3.186 9 H -0.197 1.197 10 H -0.195 1.195 11 H -0.184 1.184 12 C 0.292 3.708 13 O -0.488 6.488 14 C -0.119 4.119 15 C -0.196 4.196 16 C -0.087 4.087 17 C -0.068 4.068 18 C -0.075 4.075 19 C -0.156 4.156 20 C 0.061 3.939 21 C -0.184 4.184 22 C -0.069 4.069 23 C -0.145 4.145 24 C -0.027 4.027 25 O -0.231 6.231 26 N -0.077 5.077 27 O 0.041 5.959 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.212 0.788 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.599 -5.764 19.993 21.829 hybrid contribution 0.474 0.811 -1.044 1.404 sum -6.126 -4.953 18.949 20.521 Atomic orbital electron populations 1.22042 0.94720 1.02782 1.01040 1.21894 0.94510 0.82943 1.03765 1.43726 1.51791 1.13045 1.04475 1.19547 1.39859 0.97102 0.91074 0.90220 1.26331 0.92514 0.96125 1.04526 1.69946 1.28792 1.16463 1.35896 0.85027 0.79314 0.78303 0.75960 1.19706 1.19464 1.18423 1.17241 0.84543 0.87234 0.81736 1.90634 1.55566 1.16640 1.85910 1.24503 1.03445 0.86110 0.97818 1.22959 1.05126 1.02371 0.89115 1.22010 1.01311 0.89891 0.95515 1.17581 1.07176 0.95906 0.86123 1.21072 0.95821 0.97362 0.93279 1.20395 1.05543 0.97130 0.92554 1.19956 0.95756 0.94453 0.83698 1.20961 1.06978 0.96478 0.94017 1.20338 0.96570 0.97580 0.92407 1.21930 1.04735 0.96613 0.91219 1.24169 0.96995 0.82374 0.99116 1.86807 1.69830 1.47416 1.19043 1.73880 1.20122 1.23884 0.89854 1.85157 1.62355 1.27738 1.20681 0.92886 0.89445 0.94078 0.88500 0.91496 0.90844 0.78832 0.82833 0.82586 0.85352 0.87272 0.88002 0.89093 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.81 71.98 0.71 -4.78 16 2 C 0.09 4.11 5.23 86.38 0.45 4.57 16 3 N -0.41 -21.59 2.53 -639.43 -1.62 -23.20 16 4 C -0.35 -19.14 8.93 84.16 0.75 -18.39 16 5 H 0.08 4.59 7.71 -2.91 -0.02 4.56 16 6 C 0.01 0.53 4.91 84.99 0.42 0.95 16 7 N -0.88 -45.59 11.48 21.70 0.25 -45.34 16 8 Si 0.99 40.01 29.60 68.60 2.03 42.04 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 11 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 12 C 0.50 26.11 7.57 86.63 0.66 26.76 16 13 O -0.60 -34.38 16.75 -4.17 -0.07 -34.45 16 14 C -0.05 -2.31 6.71 24.32 0.16 -2.14 16 15 C -0.17 -6.32 10.31 22.89 0.24 -6.09 16 16 C 0.07 2.33 7.05 42.94 0.30 2.63 16 17 C -0.07 -1.85 5.88 -20.00 -0.12 -1.97 16 18 C -0.06 -1.28 9.57 22.41 0.21 -1.07 16 19 C -0.14 -2.80 10.05 22.42 0.23 -2.58 16 20 C 0.11 2.29 7.04 22.75 0.16 2.45 16 21 C -0.18 -3.84 6.26 -19.54 -0.12 -3.96 16 22 C -0.05 -1.25 9.69 22.39 0.22 -1.03 16 23 C -0.11 -1.39 7.12 30.74 0.22 -1.17 16 24 C 0.05 0.51 8.01 72.56 0.58 1.09 16 25 O -0.32 -5.99 11.10 -94.96 -1.05 -7.05 16 26 N -0.37 -13.75 11.80 -48.86 -0.58 -14.32 16 27 O 0.11 4.32 6.97 65.41 0.46 4.77 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.04 1.52 7.29 -2.38 -0.02 1.50 16 31 H 0.10 4.64 5.54 -2.39 -0.01 4.62 16 32 H 0.07 2.94 5.31 -2.38 -0.01 2.93 16 33 H 0.28 13.53 8.31 -92.70 -0.77 12.76 16 34 H 0.19 6.18 7.60 -2.91 -0.02 6.16 16 35 H 0.15 2.97 7.25 -2.91 -0.02 2.95 16 36 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.13 3.22 7.91 -2.91 -0.02 3.20 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.86 349.51 5.56 -62.30 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.08 Total: 19.96 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.06 Total: -4.72 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.94 Total: -82.87 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.67 Total: -36.72 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -67.86 5.56 -62.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123139031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.813 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds