Wall clock time and date at job start Tue Mar 31 2020 16:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46870 * 2 1 4 4 N 1.46503 * 109.47453 * 240.00181 * 2 1 3 5 5 C 1.34773 * 120.00191 * 84.99311 * 4 2 1 6 6 O 1.21697 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.46656 * 119.99946 * 179.97438 * 5 4 2 8 8 C 1.36548 * 125.98855 * 179.97438 * 7 5 4 9 9 C 1.40363 * 106.70718 * 179.97438 * 8 7 5 10 10 C 1.35120 * 107.11576 * 0.02562 * 9 8 7 11 11 O 1.33934 * 108.76979 * 359.76247 * 10 9 8 12 12 C 1.50697 * 109.47290 * 119.99889 * 2 1 3 13 13 O 1.21276 * 120.00402 * 119.99788 * 12 2 1 14 14 N 1.34782 * 119.99776 * 300.00131 * 12 2 1 15 15 C 1.39239 * 119.99912 * 184.97365 * 14 12 2 16 16 C 1.39483 * 119.83274 * 324.01950 * 15 14 12 17 17 C 1.36368 * 120.16693 * 180.23240 * 16 15 14 18 18 C 1.40872 * 119.82974 * 359.50163 * 17 16 15 19 19 C 1.41155 * 120.16311 * 180.25390 * 18 17 16 20 20 H 1.08007 * 119.99586 * 204.74881 * 19 18 17 21 21 C 1.39900 * 120.00444 * 24.74951 * 19 18 17 22 22 N 1.30872 * 119.99804 * 17.68942 * 21 19 18 23 23 Si 1.86798 * 120.00149 * 197.69345 * 21 19 18 24 24 H 1.48501 * 109.47224 * 84.98661 * 23 21 19 25 25 H 1.48502 * 109.46899 * 204.98875 * 23 21 19 26 26 H 1.48500 * 109.46940 * 324.98787 * 23 21 19 27 27 C 1.40865 * 119.66977 * 0.49377 * 18 17 16 28 28 C 1.36376 * 119.83129 * 359.75953 * 27 18 17 29 29 H 1.08999 * 109.47373 * 300.00273 * 1 2 3 30 30 H 1.09006 * 109.47223 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99569 * 265.00511 * 4 2 1 33 33 H 1.08000 * 126.64161 * 0.02562 * 8 7 5 34 34 H 1.08004 * 126.43911 * 180.02562 * 9 8 7 35 35 H 1.08006 * 125.61882 * 180.02562 * 10 9 8 36 36 H 0.96995 * 119.99749 * 4.97792 * 14 12 2 37 37 H 1.08003 * 119.91626 * 359.95496 * 16 15 14 38 38 H 1.08010 * 120.08831 * 179.74676 * 17 16 15 39 39 H 0.96999 * 120.00090 * 179.97438 * 22 21 19 40 40 H 1.07999 * 120.08323 * 179.73224 * 27 18 17 41 41 H 1.07996 * 119.91679 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8579 1.1626 -2.4117 7 6 2.6365 -0.7095 -3.5544 8 6 2.8127 -0.1507 -4.7878 9 6 3.2939 -1.1681 -5.6267 10 6 3.3886 -2.2891 -4.8783 11 8 2.9962 -2.0076 -3.6290 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.2539 -0.8424 3.5896 16 6 2.4759 -2.2193 3.6149 17 6 3.0070 -2.8074 4.7247 18 6 3.3413 -2.0193 5.8434 19 6 3.8965 -2.6200 6.9938 20 1 3.7883 -2.1439 7.9572 21 6 4.5868 -3.8321 6.8862 22 7 5.0208 -4.2365 5.7197 23 14 4.8890 -4.8731 8.4075 24 1 3.7054 -5.7332 8.6618 25 1 6.0848 -5.7272 8.1932 26 1 5.1170 -3.9865 9.5767 27 6 3.1142 -0.6295 5.8102 28 6 2.5776 -0.0562 4.6952 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.6201 0.8754 -5.0641 34 1 3.5419 -1.0727 -6.6735 35 1 3.7290 -3.2524 -5.2285 36 1 1.0912 0.4943 2.5448 37 1 2.2224 -2.8217 2.7551 38 1 3.1746 -3.8742 4.7445 39 1 5.4998 -5.0767 5.6451 40 1 3.3640 -0.0195 6.6658 41 1 2.4025 1.0091 4.6684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129540183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:17 Heat of formation + Delta-G solvation = -31.227689 kcal Electronic energy + Delta-G solvation = -26347.040176 eV Core-core repulsion = 22386.592655 eV Total energy + Delta-G solvation = -3960.447522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92699 -40.35974 -39.18702 -37.36839 -35.18300 -34.55133 -33.35480 -33.08620 -31.45933 -29.75157 -29.51270 -28.81790 -25.52823 -24.63014 -23.06930 -22.02771 -21.44369 -20.98474 -20.44592 -19.68636 -18.89441 -17.40511 -17.24515 -16.79171 -16.57470 -15.96529 -15.81873 -15.31530 -15.04083 -14.57164 -14.41782 -13.97322 -13.69084 -13.46669 -13.26587 -13.23721 -12.95720 -12.72612 -12.57011 -12.46939 -12.12767 -11.88468 -11.72653 -11.50320 -11.15896 -10.98526 -10.56945 -10.52345 -10.34600 -10.00352 -9.93374 -9.59627 -9.42834 -9.12967 -8.93682 -8.73222 -7.56575 -7.08420 -6.78320 -4.33668 0.80837 2.07580 2.38756 2.49226 2.86895 2.92701 2.98609 3.05053 3.07589 3.08522 3.28784 3.65571 3.90408 4.40628 4.59219 4.61364 4.70646 4.83780 4.91340 5.05703 5.33049 5.41477 5.47569 5.57683 5.64062 5.67136 5.95378 6.02172 6.08852 6.11934 6.36035 6.54762 6.72746 6.93584 7.00493 7.11061 7.23824 7.28605 7.55222 7.60738 7.85394 7.89945 8.01781 8.13516 8.25821 8.57858 8.64257 8.84494 8.95463 10.14662 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002389 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.975726 B =11719.700138 C =12886.635805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.116 0.884 4 N -0.698 5.698 5 C 0.607 3.393 6 O -0.524 6.524 7 C -0.077 4.077 8 C -0.121 4.121 9 C -0.228 4.228 10 C -0.004 4.004 11 O -0.160 6.160 12 C 0.494 3.506 13 O -0.524 6.524 14 N -0.641 5.641 15 C -0.015 4.015 16 C -0.082 4.082 17 C -0.160 4.160 18 C 0.107 3.893 19 C -0.458 4.458 20 H 0.079 0.921 21 C 0.074 3.926 22 N -0.786 5.786 23 Si 0.910 3.090 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.217 4.217 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.416 0.584 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.211 0.789 36 H 0.396 0.604 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 4.035 -17.137 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.133 0.867 4 N -0.350 5.350 5 C 0.393 3.607 6 O -0.403 6.403 7 C -0.129 4.129 8 C -0.141 4.141 9 C -0.247 4.247 10 C -0.074 4.074 11 O -0.055 6.055 12 C 0.280 3.720 13 O -0.400 6.400 14 N -0.284 5.284 15 C -0.107 4.107 16 C -0.102 4.102 17 C -0.180 4.180 18 C 0.105 3.895 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.411 5.411 23 Si 0.734 3.266 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.237 4.237 28 C -0.120 4.120 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.227 0.773 36 H 0.230 0.770 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.719 3.788 -17.080 18.406 hybrid contribution 0.233 -0.502 0.401 0.684 sum -5.486 3.286 -16.679 17.863 Atomic orbital electron populations 1.22150 0.92711 1.03397 1.03580 1.20848 0.95709 0.98097 0.83652 0.86657 1.45648 1.65980 1.15270 1.08146 1.16489 0.77557 0.85601 0.81013 1.90874 1.51160 1.14106 1.84124 1.22008 1.10946 0.82817 0.97097 1.21973 0.99800 1.01221 0.91132 1.21865 1.08138 0.92852 1.01861 1.24470 1.00701 1.00987 0.81217 1.84118 1.63513 1.26539 1.31314 1.20377 0.81344 0.85708 0.84619 1.90719 1.37804 1.25492 1.86010 1.42827 1.45620 1.35490 1.04484 1.17155 1.13745 0.92323 0.87491 1.20513 0.99649 0.92294 0.97779 1.21004 1.03038 1.00059 0.93857 1.17689 0.88440 0.90591 0.92818 1.19569 1.29670 1.04190 0.95233 0.90307 1.25959 0.93569 0.97611 0.97330 1.69858 1.25785 1.20117 1.25315 0.86304 0.78517 0.79863 0.81921 1.19147 1.20315 1.18644 1.20548 1.10282 0.94860 0.97992 1.20067 1.01177 0.96591 0.94154 0.90614 0.90872 0.91522 0.74571 0.82175 0.82548 0.77266 0.76969 0.87661 0.86231 0.90699 0.88583 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.38 37.16 0.35 -1.31 16 2 C 0.13 1.63 2.99 -69.08 -0.21 1.43 16 3 H 0.12 1.46 7.58 -51.93 -0.39 1.07 16 4 N -0.70 -9.35 4.95 -56.25 -0.28 -9.63 16 5 C 0.61 8.29 7.75 -12.86 -0.10 8.19 16 6 O -0.52 -8.10 16.53 5.19 0.09 -8.02 16 7 C -0.08 -0.93 7.13 -36.80 -0.26 -1.19 16 8 C -0.12 -1.24 10.62 -39.39 -0.42 -1.66 16 9 C -0.23 -1.82 10.87 -39.89 -0.43 -2.25 16 10 C 0.00 -0.03 12.08 29.62 0.36 0.33 16 11 O -0.16 -1.78 10.40 5.00 0.05 -1.73 16 12 C 0.49 8.34 7.05 -10.98 -0.08 8.26 16 13 O -0.52 -10.97 13.28 5.56 0.07 -10.89 16 14 N -0.64 -10.76 5.22 -9.74 -0.05 -10.81 16 15 C -0.02 -0.33 6.30 -83.57 -0.53 -0.85 16 16 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 17 C -0.16 -4.21 8.64 -39.26 -0.34 -4.55 16 18 C 0.11 2.84 5.57 -106.80 -0.60 2.24 16 19 C -0.46 -11.98 9.04 -37.85 -0.34 -12.32 16 20 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 21 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.79 -20.50 10.96 55.55 0.61 -19.89 16 23 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 27 C -0.22 -5.18 9.74 -39.26 -0.38 -5.56 16 28 C -0.10 -2.15 9.90 -39.79 -0.39 -2.54 16 29 H 0.08 0.64 7.46 -51.93 -0.39 0.26 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.42 5.68 7.55 -40.82 -0.31 5.37 16 33 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.21 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.40 5.07 8.10 -40.82 -0.33 4.74 16 37 H 0.11 2.55 6.26 -52.48 -0.33 2.22 16 38 H 0.12 3.27 6.16 -52.48 -0.32 2.95 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -32.05 358.94 -7.51 -39.57 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -4.58 Total: 14.90 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.80 Total: -12.38 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.28 Total: -40.33 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.21 Total: -20.64 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.05 -7.51 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129540183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.337 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds