Wall clock time and date at job start Tue Mar 31 2020 16:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46870 * 2 1 4 4 N 1.46503 * 109.47453 * 240.00181 * 2 1 3 5 5 C 1.34773 * 120.00191 * 84.99311 * 4 2 1 6 6 O 1.21697 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.46656 * 119.99946 * 179.97438 * 5 4 2 8 8 C 1.36548 * 125.98855 * 179.97438 * 7 5 4 9 9 C 1.40363 * 106.70718 * 179.97438 * 8 7 5 10 10 C 1.35120 * 107.11576 * 0.02562 * 9 8 7 11 11 O 1.33934 * 108.76979 * 359.76247 * 10 9 8 12 12 C 1.50697 * 109.47290 * 119.99889 * 2 1 3 13 13 O 1.21276 * 120.00402 * 119.99788 * 12 2 1 14 14 N 1.34782 * 119.99776 * 300.00131 * 12 2 1 15 15 C 1.39239 * 119.99912 * 184.97365 * 14 12 2 16 16 C 1.39483 * 119.83274 * 324.01950 * 15 14 12 17 17 C 1.36368 * 120.16693 * 180.23240 * 16 15 14 18 18 C 1.40872 * 119.82974 * 359.50163 * 17 16 15 19 19 C 1.41155 * 120.16311 * 180.25390 * 18 17 16 20 20 H 1.08007 * 119.99586 * 204.74881 * 19 18 17 21 21 C 1.39900 * 120.00444 * 24.74951 * 19 18 17 22 22 N 1.30872 * 119.99804 * 17.68942 * 21 19 18 23 23 Si 1.86798 * 120.00149 * 197.69345 * 21 19 18 24 24 H 1.48501 * 109.47224 * 84.98661 * 23 21 19 25 25 H 1.48502 * 109.46899 * 204.98875 * 23 21 19 26 26 H 1.48500 * 109.46940 * 324.98787 * 23 21 19 27 27 C 1.40865 * 119.66977 * 0.49377 * 18 17 16 28 28 C 1.36376 * 119.83129 * 359.75953 * 27 18 17 29 29 H 1.08999 * 109.47373 * 300.00273 * 1 2 3 30 30 H 1.09006 * 109.47223 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99569 * 265.00511 * 4 2 1 33 33 H 1.08000 * 126.64161 * 0.02562 * 8 7 5 34 34 H 1.08004 * 126.43911 * 180.02562 * 9 8 7 35 35 H 1.08006 * 125.61882 * 180.02562 * 10 9 8 36 36 H 0.96995 * 119.99749 * 4.97792 * 14 12 2 37 37 H 1.08003 * 119.91626 * 359.95496 * 16 15 14 38 38 H 1.08010 * 120.08831 * 179.74676 * 17 16 15 39 39 H 0.96999 * 120.00090 * 179.97438 * 22 21 19 40 40 H 1.07999 * 120.08323 * 179.73224 * 27 18 17 41 41 H 1.07996 * 119.91679 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8579 1.1626 -2.4117 7 6 2.6365 -0.7095 -3.5544 8 6 2.8127 -0.1507 -4.7878 9 6 3.2939 -1.1681 -5.6267 10 6 3.3886 -2.2891 -4.8783 11 8 2.9962 -2.0076 -3.6290 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.2539 -0.8424 3.5896 16 6 2.4759 -2.2193 3.6149 17 6 3.0070 -2.8074 4.7247 18 6 3.3413 -2.0193 5.8434 19 6 3.8965 -2.6200 6.9938 20 1 3.7883 -2.1439 7.9572 21 6 4.5868 -3.8321 6.8862 22 7 5.0208 -4.2365 5.7197 23 14 4.8890 -4.8731 8.4075 24 1 3.7054 -5.7332 8.6618 25 1 6.0848 -5.7272 8.1932 26 1 5.1170 -3.9865 9.5767 27 6 3.1142 -0.6295 5.8102 28 6 2.5776 -0.0562 4.6952 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.6201 0.8754 -5.0641 34 1 3.5419 -1.0727 -6.6735 35 1 3.7290 -3.2524 -5.2285 36 1 1.0912 0.4943 2.5448 37 1 2.2224 -2.8217 2.7551 38 1 3.1746 -3.8742 4.7445 39 1 5.4998 -5.0767 5.6451 40 1 3.3640 -0.0195 6.6658 41 1 2.4025 1.0091 4.6684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129540183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:15 Heat of formation + Delta-G solvation = -52.581111 kcal Electronic energy + Delta-G solvation = -26347.966130 eV Core-core repulsion = 22386.592655 eV Total energy + Delta-G solvation = -3961.373476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -43.67274 -41.67869 -40.44759 -39.09221 -36.44277 -36.12354 -34.83380 -34.07078 -32.53950 -31.41598 -30.88493 -30.22300 -27.09604 -25.82746 -24.21333 -23.22070 -22.78745 -22.52796 -21.41126 -21.08381 -19.95307 -19.25912 -18.62077 -17.85519 -17.44363 -17.19338 -17.13445 -16.87327 -16.30333 -15.81964 -15.69334 -15.56424 -14.98545 -14.82837 -14.46752 -14.21347 -13.96261 -13.95312 -13.82116 -13.62706 -13.57566 -13.39877 -13.30201 -12.82266 -12.77032 -12.64374 -12.32438 -11.75398 -11.71029 -11.59363 -11.24589 -11.06613 -10.88518 -10.53571 -10.40687 -9.69570 -9.45920 -8.91542 -8.63297 -6.28407 -0.02344 0.77691 1.14379 1.37335 1.39321 1.41817 1.51675 1.52244 1.68739 1.95962 2.03515 2.20119 2.37782 2.74317 3.50582 3.68764 3.74273 3.93538 3.94641 4.04164 4.09588 4.43698 4.47979 4.56227 4.61503 4.72056 4.88626 4.93141 4.96332 5.06516 5.10315 5.13604 5.18057 5.29051 5.38602 5.41135 5.67674 5.79935 5.85479 6.06137 6.09453 6.26471 6.32743 6.60055 6.67974 6.83569 6.91676 6.98963 7.28497 8.31817 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002389 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.975726 B =11719.700138 C =12886.635805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.125 0.875 4 N -0.702 5.702 5 C 0.608 3.392 6 O -0.549 6.549 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.232 4.232 10 C 0.007 3.993 11 O -0.178 6.178 12 C 0.497 3.503 13 O -0.566 6.566 14 N -0.631 5.631 15 C 0.001 3.999 16 C -0.096 4.096 17 C -0.184 4.184 18 C 0.074 3.926 19 C -0.493 4.493 20 H 0.082 0.918 21 C 0.030 3.970 22 N -0.826 5.826 23 Si 0.985 3.015 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.226 4.226 28 C -0.095 4.095 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.251 0.749 36 H 0.420 0.580 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.110 0.890 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 5.044 -18.250 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.143 0.857 4 N -0.353 5.353 5 C 0.396 3.604 6 O -0.430 6.430 7 C -0.168 4.168 8 C -0.138 4.138 9 C -0.250 4.250 10 C -0.062 4.062 11 O -0.074 6.074 12 C 0.284 3.716 13 O -0.445 6.445 14 N -0.276 5.276 15 C -0.093 4.093 16 C -0.116 4.116 17 C -0.205 4.205 18 C 0.072 3.928 19 C -0.522 4.522 20 H 0.100 0.900 21 C -0.185 4.185 22 N -0.452 5.452 23 Si 0.806 3.194 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.178 1.178 27 C -0.245 4.245 28 C -0.115 4.115 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.184 0.816 34 H 0.205 0.795 35 H 0.267 0.733 36 H 0.259 0.741 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.305 4.844 -18.206 19.866 hybrid contribution 0.382 -0.754 0.512 0.988 sum -5.923 4.090 -17.694 19.102 Atomic orbital electron populations 1.22149 0.90232 1.03718 1.05062 1.20854 0.97393 0.97514 0.81508 0.85724 1.45715 1.66147 1.15133 1.08335 1.16668 0.76995 0.85389 0.81350 1.90841 1.52515 1.14982 1.84651 1.21831 1.13994 0.83733 0.97193 1.22288 0.98540 1.02029 0.90936 1.22245 1.07694 0.91959 1.03109 1.25413 0.98349 1.02600 0.79885 1.84107 1.64055 1.26129 1.33078 1.21053 0.80147 0.84904 0.85494 1.90713 1.39591 1.27539 1.86683 1.42688 1.45873 1.35863 1.03199 1.17212 1.11716 0.91397 0.88925 1.20571 1.00142 0.93910 0.96935 1.20910 1.05046 0.99290 0.95209 1.18037 0.89567 0.92063 0.93181 1.19838 1.31142 1.05798 0.95402 0.89998 1.26864 0.92722 0.98358 1.00510 1.69937 1.26839 1.20840 1.27609 0.85171 0.78543 0.77950 0.77775 1.18645 1.19550 1.17779 1.20823 1.10239 0.94063 0.99424 1.20434 0.99510 0.98705 0.92853 0.88184 0.90312 0.91795 0.74887 0.81630 0.79536 0.73293 0.74129 0.88329 0.88539 0.90230 0.87218 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.38 71.98 0.68 -2.18 16 2 C 0.14 3.35 2.99 44.24 0.13 3.49 16 3 H 0.13 2.93 7.58 -2.39 -0.02 2.91 16 4 N -0.70 -18.71 4.95 -450.09 -2.23 -20.93 16 5 C 0.61 16.54 7.75 86.44 0.67 17.21 16 6 O -0.55 -16.79 16.53 -4.34 -0.07 -16.86 16 7 C -0.12 -2.78 7.13 24.07 0.17 -2.61 16 8 C -0.12 -2.28 10.62 22.39 0.24 -2.04 16 9 C -0.23 -3.10 10.87 22.07 0.24 -2.86 16 10 C 0.01 0.09 12.08 67.10 0.81 0.90 16 11 O -0.18 -3.83 10.40 -5.02 -0.05 -3.88 16 12 C 0.50 16.34 7.05 87.66 0.62 16.96 16 13 O -0.57 -24.05 13.28 -3.02 -0.04 -24.09 16 14 N -0.63 -19.94 5.22 -303.11 -1.58 -21.52 16 15 C 0.00 0.03 6.30 38.56 0.24 0.27 16 16 C -0.10 -4.78 8.61 22.13 0.19 -4.59 16 17 C -0.18 -10.20 8.64 22.48 0.19 -10.00 16 18 C 0.07 4.04 5.57 -21.28 -0.12 3.92 16 19 C -0.49 -26.63 9.04 23.39 0.21 -26.41 16 20 H 0.08 4.19 7.91 -2.91 -0.02 4.16 16 21 C 0.03 1.55 5.14 85.24 0.44 1.99 16 22 N -0.83 -45.00 10.96 21.82 0.24 -44.76 16 23 Si 0.99 38.63 29.59 68.60 2.03 40.66 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 27 C -0.23 -10.71 9.74 22.48 0.22 -10.49 16 28 C -0.10 -3.91 9.90 22.13 0.22 -3.69 16 29 H 0.10 1.36 7.46 -2.39 -0.02 1.35 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 11.54 7.55 -92.71 -0.70 10.84 16 33 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.42 9.32 8.10 -92.71 -0.75 8.57 16 37 H 0.10 4.98 6.26 -2.91 -0.02 4.96 16 38 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 39 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 40 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 41 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -73.56 358.94 3.10 -70.46 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -0.35 Total: 41.07 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 5.15 Total: -20.13 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.57 Total: -87.22 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.16 Total: -44.84 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -73.56 3.10 -70.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129540183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.880 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds