Wall clock time and date at job start Tue Mar 31 2020 15:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 N 1.46505 * 109.46860 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99487 * 269.42200 * 4 3 2 6 6 H 1.08000 * 120.00396 * 326.11883 * 5 4 3 7 7 C 1.38810 * 120.00060 * 146.12374 * 5 4 3 8 8 N 1.31621 * 119.99856 * 336.56815 * 7 5 4 9 9 Si 1.86797 * 120.00312 * 156.56481 * 7 5 4 10 10 H 1.48503 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47347 * 120.00107 * 9 7 5 12 12 H 1.48498 * 109.47496 * 239.99981 * 9 7 5 13 13 C 1.46494 * 120.00411 * 89.42080 * 4 3 2 14 14 C 1.50700 * 109.46973 * 89.99782 * 13 4 3 15 15 N 1.29906 * 124.85397 * 89.72800 * 14 13 4 16 16 C 1.36062 * 108.79883 * 179.83589 * 15 14 13 17 17 C 1.39586 * 133.80450 * 180.08368 * 16 15 14 18 18 C 1.37688 * 119.72938 * 180.35376 * 17 16 15 19 19 C 1.50700 * 119.78768 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.47321 * 90.00002 * 19 18 17 21 21 F 1.39891 * 109.47026 * 210.00456 * 19 18 17 22 22 F 1.39903 * 109.47228 * 329.99866 * 19 18 17 23 23 C 1.38720 * 120.42327 * 0.02562 * 18 17 16 24 24 C 1.37910 * 120.47410 * 359.97438 * 23 18 17 25 25 C 1.38668 * 119.87520 * 0.03925 * 24 23 18 26 26 O 1.34235 * 124.86011 * 270.02656 * 14 13 4 27 27 H 1.09003 * 109.47349 * 59.99825 * 1 2 3 28 28 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47246 * 300.00553 * 1 2 3 30 30 H 1.08994 * 109.46951 * 240.00303 * 2 1 3 31 31 H 1.08990 * 109.47068 * 120.00119 * 2 1 3 32 32 H 1.08999 * 109.46910 * 59.99910 * 3 2 1 33 33 H 1.08999 * 109.46891 * 299.99583 * 3 2 1 34 34 H 0.97001 * 120.00216 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47166 * 209.99814 * 13 4 3 36 36 H 1.09004 * 109.46997 * 330.00231 * 13 4 3 37 37 H 1.08002 * 120.13707 * 0.34196 * 17 16 15 38 38 H 1.07989 * 119.76188 * 180.02562 * 23 18 17 39 39 H 1.07995 * 120.05998 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4543 1.1850 6 1 3.7880 1.9842 2.0358 7 6 5.4015 0.7853 1.2933 8 7 5.6798 -0.2084 0.4762 9 14 6.6367 1.2952 2.5985 10 1 6.0874 2.4298 3.3835 11 1 6.9009 0.1488 3.5048 12 1 7.9035 1.7119 1.9453 13 6 4.2370 1.4299 -1.2695 14 6 4.4880 2.8463 -1.7187 15 7 5.5326 3.5512 -1.4033 16 6 5.4270 4.7764 -1.9855 17 6 6.2351 5.9145 -1.9950 18 6 5.8344 7.0306 -2.6948 19 6 6.7055 8.2602 -2.7055 20 9 7.5966 8.1912 -3.7817 21 9 5.9033 9.3988 -2.8365 22 9 7.4252 8.3323 -1.5080 23 6 4.6335 7.0306 -3.3892 24 6 3.8252 5.9133 -3.3886 25 6 4.2129 4.7806 -2.6889 26 8 3.6614 3.5621 -2.4974 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 6.5262 -0.6762 0.5521 35 1 5.1895 0.9174 -1.1344 36 1 3.6476 0.9086 -2.0238 37 1 7.1707 5.9198 -1.4555 38 1 4.3299 7.9117 -3.9349 39 1 2.8918 5.9205 -3.9319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132361431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:53 Heat of formation + Delta-G solvation = -114.698831 kcal Electronic energy + Delta-G solvation = -27774.966944 eV Core-core repulsion = 23269.043102 eV Total energy + Delta-G solvation = -4505.923842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -51.23476 -48.74480 -48.68736 -44.26750 -39.43188 -38.12203 -35.79537 -34.65763 -33.09010 -32.53549 -31.29375 -28.86190 -27.39867 -26.90220 -24.44818 -23.54420 -23.41369 -22.66022 -21.61040 -19.96960 -19.55903 -19.51437 -19.00198 -18.61106 -17.80878 -17.36108 -16.94540 -16.01868 -15.96040 -15.72566 -15.67818 -15.47432 -15.30792 -15.12874 -15.04517 -14.88750 -14.84386 -14.82659 -14.40756 -14.02683 -13.70616 -13.41343 -13.33277 -13.08399 -12.79291 -12.68498 -12.67323 -12.51812 -12.38817 -12.15982 -12.01009 -11.83825 -11.44081 -11.34568 -10.64516 -10.18484 -9.59522 -8.86717 -8.02497 -5.54719 -0.46288 -0.28021 1.31140 1.41508 1.45316 1.47674 1.52961 1.58134 2.26217 2.44515 2.53281 2.81373 3.09319 3.25329 3.34023 3.36400 3.56522 3.78974 3.93836 4.06770 4.20552 4.26516 4.41600 4.46779 4.59317 4.70348 4.78596 4.84063 4.89500 4.92952 5.02608 5.11605 5.20811 5.29477 5.32651 5.37246 5.46376 5.57374 5.70765 6.30941 6.70985 6.96889 7.64247 8.13015 8.99651 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003647 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.628592 B = 7676.214350 C = 9114.966946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.142 3.858 4 N -0.577 5.577 5 C -0.272 4.272 6 H 0.055 0.945 7 C -0.010 4.010 8 N -0.900 5.900 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.292 1.292 13 C 0.218 3.782 14 C 0.261 3.739 15 N -0.516 5.516 16 C -0.007 4.007 17 C -0.028 4.028 18 C -0.184 4.184 19 C 0.525 3.475 20 F -0.175 7.175 21 F -0.167 7.167 22 F -0.182 7.182 23 C -0.051 4.051 24 C -0.076 4.076 25 C 0.005 3.995 26 O -0.219 6.219 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.258 0.742 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.190 0.810 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 13.447 -10.298 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.018 3.982 4 N -0.295 5.295 5 C -0.402 4.402 6 H 0.073 0.927 7 C -0.209 4.209 8 N -0.543 5.543 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.219 1.219 13 C 0.088 3.912 14 C 0.047 3.953 15 N -0.246 5.246 16 C -0.118 4.118 17 C -0.047 4.047 18 C -0.187 4.187 19 C 0.470 3.530 20 F -0.157 7.157 21 F -0.148 7.148 22 F -0.163 7.163 23 C -0.069 4.069 24 C -0.094 4.094 25 C -0.047 4.047 26 O -0.110 6.110 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.207 0.793 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.406 13.145 -9.877 17.022 hybrid contribution 0.814 0.266 0.658 1.080 sum -3.591 13.411 -9.219 16.665 Atomic orbital electron populations 1.21668 0.94145 1.01882 1.01962 1.21862 0.96130 0.98162 1.00652 1.21202 0.82037 0.95459 0.99522 1.44021 1.01434 1.83084 1.01000 1.19131 1.03895 1.26498 0.90686 0.92694 1.25504 1.01125 0.94617 0.99680 1.69943 1.23935 1.19436 1.40995 0.85580 0.79743 0.77895 0.79394 1.20132 1.20905 1.21878 1.19972 1.02487 0.81226 0.87531 1.29495 0.82233 0.98444 0.85123 1.70769 1.25425 1.03495 1.24866 1.20234 0.96708 0.94285 1.00604 1.20019 0.99044 0.88897 0.96739 1.19796 0.98964 0.93543 1.06390 1.17877 0.78391 0.83133 0.73565 1.93234 1.69907 1.96468 1.56048 1.93201 1.73064 1.53031 1.95552 1.93204 1.79508 1.96615 1.46990 1.21081 0.90542 0.98904 0.96398 1.20246 1.02674 0.87158 0.99346 1.21139 0.94231 0.87629 1.01684 1.84606 1.46578 1.21972 1.57880 0.91889 0.92243 0.92711 0.93412 0.94438 0.93705 0.92711 0.93201 0.86394 0.89774 0.84042 0.79269 0.80179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.92 16 2 C -0.13 -4.54 6.26 30.60 0.19 -4.35 16 3 C 0.14 5.53 5.67 86.38 0.49 6.02 16 4 N -0.58 -27.22 2.44 -706.34 -1.72 -28.94 16 5 C -0.27 -14.47 9.48 84.03 0.80 -13.68 16 6 H 0.06 2.99 7.93 -2.91 -0.02 2.97 16 7 C -0.01 -0.54 4.94 84.86 0.42 -0.12 16 8 N -0.90 -49.52 11.34 21.65 0.25 -49.27 16 9 Si 0.95 45.06 29.61 68.60 2.03 47.09 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 13 C 0.22 9.83 5.92 85.63 0.51 10.33 16 14 C 0.26 11.34 7.82 88.39 0.69 12.03 16 15 N -0.52 -23.69 11.34 -296.26 -3.36 -27.05 16 16 C -0.01 -0.26 7.24 39.32 0.28 0.02 16 17 C -0.03 -0.87 9.43 22.47 0.21 -0.66 16 18 C -0.18 -4.41 5.45 -19.88 -0.11 -4.52 16 19 C 0.52 11.32 3.36 71.24 0.24 11.56 16 20 F -0.18 -3.83 17.30 44.97 0.78 -3.05 16 21 F -0.17 -3.17 16.44 44.97 0.74 -2.43 16 22 F -0.18 -4.42 16.44 44.97 0.74 -3.68 16 23 C -0.05 -0.97 9.38 22.31 0.21 -0.76 16 24 C -0.08 -1.68 10.06 22.29 0.22 -1.45 16 25 C 0.00 0.16 7.43 22.88 0.17 0.33 16 26 O -0.22 -8.27 10.77 -9.98 -0.11 -8.37 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 33 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.12 6.11 5.33 -2.39 -0.01 6.09 16 36 H 0.08 3.34 8.07 -2.38 -0.02 3.32 16 37 H 0.14 4.32 7.59 -2.91 -0.02 4.30 16 38 H 0.19 1.99 7.58 -2.92 -0.02 1.97 16 39 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -62.39 349.03 5.48 -56.92 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.09 Total: 6.97 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.04 Total: 11.83 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -4.83 Total: -105.26 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.11 Total: -8.37 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 2.26 Total: -9.17 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -62.39 5.48 -56.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132361431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.783 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds