Wall clock time and date at job start Tue Mar 31 2020 16:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47221 * 2 1 4 4 C 1.46901 * 111.00142 * 304.82824 * 3 2 1 5 5 C 1.50702 * 109.46931 * 293.95415 * 4 3 2 6 6 H 1.07999 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99742 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99747 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46886 * 90.00236 * 9 7 5 11 11 H 1.48499 * 109.47132 * 209.99907 * 9 7 5 12 12 H 1.48501 * 109.47378 * 330.00295 * 9 7 5 13 13 C 1.46897 * 110.99873 * 68.78438 * 3 2 1 14 14 C 1.50702 * 109.47483 * 76.00041 * 13 3 2 15 15 N 1.29901 * 124.85999 * 85.09903 * 14 13 3 16 16 C 1.36055 * 108.80201 * 179.84044 * 15 14 13 17 17 C 1.39588 * 133.80599 * 180.09491 * 16 15 14 18 18 C 1.37680 * 119.73130 * 180.35447 * 17 16 15 19 19 C 1.50696 * 119.78907 * 179.97438 * 18 17 16 20 20 F 1.39908 * 109.47198 * 89.99801 * 19 18 17 21 21 F 1.39904 * 109.47106 * 209.99433 * 19 18 17 22 22 F 1.39898 * 109.47213 * 329.99923 * 19 18 17 23 23 C 1.38717 * 120.42190 * 359.97438 * 18 17 16 24 24 C 1.37911 * 120.47607 * 359.97438 * 23 18 17 25 25 C 1.38676 * 119.87403 * 0.03719 * 24 23 18 26 26 O 1.34237 * 124.85248 * 265.40535 * 14 13 3 27 27 H 1.09000 * 109.47096 * 64.28984 * 1 2 3 28 28 H 1.08997 * 109.47164 * 184.29132 * 1 2 3 29 29 H 1.09007 * 109.47182 * 304.29218 * 1 2 3 30 30 H 1.09000 * 109.47302 * 239.99523 * 2 1 3 31 31 H 1.09001 * 109.46716 * 120.00015 * 2 1 3 32 32 H 1.08995 * 109.46710 * 53.95165 * 4 3 2 33 33 H 1.08998 * 109.47251 * 173.95371 * 4 3 2 34 34 H 0.97004 * 119.99355 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47022 * 196.00094 * 13 3 2 36 36 H 1.09006 * 109.47144 * 315.99654 * 13 3 2 37 37 H 1.08000 * 120.13187 * 0.32654 * 17 16 15 38 38 H 1.08000 * 119.76303 * 180.02562 * 23 18 17 39 39 H 1.08002 * 120.06441 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4567 2.1424 -1.1258 5 6 1.9783 1.5777 -2.4220 6 1 2.6594 0.7397 -2.4106 7 6 1.5850 2.1303 -3.6224 8 7 0.7551 3.1504 -3.6362 9 14 2.2321 1.4308 -5.2291 10 1 1.3191 0.3613 -5.7066 11 1 2.3039 2.5107 -6.2459 12 1 3.5875 0.8642 -5.0121 13 6 1.7272 2.0467 1.2785 14 6 2.6899 1.5569 2.3294 15 7 3.8764 2.0443 2.5344 16 6 4.4588 1.3645 3.5590 17 6 5.6969 1.4534 4.1973 18 6 5.9973 0.5912 5.2279 19 6 7.3338 0.6857 5.9176 20 9 7.2406 1.5723 6.9959 21 9 7.7080 -0.5789 6.3847 22 9 8.2937 1.1515 5.0127 23 6 5.0775 -0.3638 5.6355 24 6 3.8499 -0.4624 5.0146 25 6 3.5308 0.3977 3.9747 26 8 2.4460 0.5508 3.1839 27 1 -0.3633 0.4458 -0.9259 28 1 -0.3633 -1.0248 0.0769 29 1 -0.3634 0.5790 0.8491 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 0.3696 2.0661 -1.1075 33 1 1.7489 3.1891 -1.0417 34 1 0.4782 3.5389 -4.4808 35 1 1.8341 3.1252 1.1621 36 1 0.7070 1.8135 1.5833 37 1 6.4165 2.1951 3.8837 38 1 5.3240 -1.0344 6.4453 39 1 3.1386 -1.2082 5.3376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151328597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:45 Heat of formation + Delta-G solvation = -102.647815 kcal Electronic energy + Delta-G solvation = -27300.778572 eV Core-core repulsion = 22795.377301 eV Total energy + Delta-G solvation = -4505.401271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -50.42924 -47.94289 -47.88461 -43.40040 -38.64253 -37.44343 -34.86580 -32.74528 -31.87922 -31.00957 -29.51256 -28.15693 -26.29418 -25.29039 -23.46567 -22.71733 -22.67196 -21.67830 -19.65067 -19.10171 -18.76049 -18.65510 -17.78638 -16.92511 -16.72861 -16.21549 -15.39185 -15.02414 -14.95198 -14.86555 -14.63153 -14.51588 -14.31865 -14.17842 -14.05676 -14.03918 -13.97692 -13.60675 -13.09402 -12.82438 -12.44972 -12.34324 -11.99363 -11.89042 -11.75116 -11.59672 -11.23747 -11.05048 -10.80691 -10.66497 -10.52085 -10.19833 -9.96084 -9.37137 -9.31824 -8.71282 -8.51064 -7.49923 -6.10412 -4.11587 0.38900 0.56414 2.22418 2.29012 2.41086 3.13805 3.28221 3.34566 3.35289 3.39912 3.61038 3.95235 4.13427 4.18839 4.37269 4.57847 4.64659 4.81194 4.86268 5.03097 5.26285 5.27727 5.41132 5.61251 5.64253 5.66525 5.70696 5.83361 5.89114 5.98947 6.02321 6.14928 6.26638 6.55981 6.76497 7.08508 7.22210 7.57884 7.65073 7.88817 8.00157 8.36017 8.94598 9.52751 11.00336 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.002563 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.364055 B =10923.547639 C =11590.689997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.527 5.527 4 C 0.191 3.809 5 C -0.507 4.507 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.130 3.870 14 C 0.292 3.708 15 N -0.464 5.464 16 C 0.027 3.973 17 C -0.007 4.007 18 C -0.189 4.189 19 C 0.516 3.484 20 F -0.176 7.176 21 F -0.176 7.176 22 F -0.174 7.174 23 C -0.063 4.063 24 C -0.085 4.085 25 C 0.028 3.972 26 O -0.210 6.210 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.008 0.992 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.276 -6.506 20.711 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.252 5.252 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.001 3.999 14 C 0.080 3.920 15 N -0.193 5.193 16 C -0.085 4.085 17 C -0.026 4.026 18 C -0.192 4.192 19 C 0.462 3.538 20 F -0.157 7.157 21 F -0.157 7.157 22 F -0.156 7.156 23 C -0.081 4.081 24 C -0.104 4.104 25 C -0.023 4.023 26 O -0.101 6.101 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.006 -5.876 20.181 22.156 hybrid contribution -0.615 -0.831 -0.384 1.102 sum 6.391 -6.707 19.798 21.858 Atomic orbital electron populations 1.22371 0.98536 1.01103 1.02603 1.22051 0.92833 0.90618 1.01538 1.62286 1.59893 1.02569 1.00449 1.19893 0.93726 0.93399 0.86236 1.21067 1.27506 1.16361 0.89628 0.91851 1.24948 0.95172 0.95022 0.99259 1.69942 1.33698 1.23401 1.26632 0.86493 0.79405 0.78567 0.82963 1.20733 1.21212 1.19748 1.20771 0.92085 1.00298 0.86783 1.27090 0.92739 0.82426 0.89729 1.70780 1.05942 1.28012 1.14525 1.19787 0.96199 0.96055 0.96413 1.19971 0.94038 0.96886 0.91672 1.19658 0.94899 1.02883 1.01746 1.18068 0.85113 0.73786 0.76850 1.93238 1.96385 1.69062 1.56998 1.93193 1.92559 1.40706 1.89240 1.93217 1.66467 1.88706 1.67163 1.20626 0.91461 0.96751 0.99301 1.19769 0.97438 0.99121 0.94069 1.20506 0.86876 0.99479 0.95485 1.84609 1.37800 1.47861 1.39832 0.90472 0.93148 0.93695 0.89561 0.93332 0.97445 0.94762 0.92816 0.86371 0.91383 0.83321 0.83229 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 9.15 37.16 0.34 -2.76 16 2 C 0.06 1.05 5.72 -3.83 -0.02 1.03 16 3 N -0.53 -10.59 4.62 -237.52 -1.10 -11.68 16 4 C 0.19 4.56 4.36 -4.97 -0.02 4.54 16 5 C -0.51 -13.50 8.58 -34.44 -0.30 -13.80 16 6 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.13 2.16 5.52 -4.98 -0.03 2.13 16 14 C 0.29 4.80 7.11 -13.09 -0.09 4.71 16 15 N -0.46 -8.06 11.34 -8.70 -0.10 -8.16 16 16 C 0.03 0.41 7.24 -84.71 -0.61 -0.20 16 17 C -0.01 -0.08 9.43 -39.28 -0.37 -0.45 16 18 C -0.19 -1.95 5.45 -104.65 -0.57 -2.52 16 19 C 0.52 5.02 3.36 36.00 0.12 5.14 16 20 F -0.18 -1.75 17.30 2.25 0.04 -1.71 16 21 F -0.18 -1.63 16.44 2.25 0.04 -1.60 16 22 F -0.17 -1.84 16.44 2.25 0.04 -1.80 16 23 C -0.06 -0.55 9.38 -39.52 -0.37 -0.92 16 24 C -0.09 -0.84 10.06 -39.54 -0.40 -1.24 16 25 C 0.03 0.39 7.43 -38.64 -0.29 0.10 16 26 O -0.21 -3.15 10.39 3.62 0.04 -3.12 16 27 H 0.08 1.48 6.46 -51.93 -0.34 1.15 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.67 6.26 -51.93 -0.32 0.35 16 30 H 0.09 1.70 7.00 -51.93 -0.36 1.34 16 31 H 0.05 0.81 7.14 -51.93 -0.37 0.44 16 32 H 0.01 0.19 5.98 -51.93 -0.31 -0.12 16 33 H 0.03 0.88 7.83 -51.93 -0.41 0.47 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.12 1.91 7.73 -51.93 -0.40 1.51 16 36 H 0.07 1.00 6.04 -51.93 -0.31 0.68 16 37 H 0.15 1.67 7.59 -52.49 -0.40 1.27 16 38 H 0.15 0.88 7.58 -52.49 -0.40 0.49 16 39 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -29.34 340.11 -6.89 -36.23 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.98 Total: -1.81 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.71 Total: -2.79 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.46 Total: -44.57 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.34 -6.89 -36.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151328597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.421 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds