Wall clock time and date at job start Tue Mar 31 2020 16:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47221 * 2 1 4 4 C 1.46901 * 111.00142 * 304.82824 * 3 2 1 5 5 C 1.50702 * 109.46931 * 293.95415 * 4 3 2 6 6 H 1.07999 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99742 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99747 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46886 * 90.00236 * 9 7 5 11 11 H 1.48499 * 109.47132 * 209.99907 * 9 7 5 12 12 H 1.48501 * 109.47378 * 330.00295 * 9 7 5 13 13 C 1.46897 * 110.99873 * 68.78438 * 3 2 1 14 14 C 1.50702 * 109.47483 * 76.00041 * 13 3 2 15 15 N 1.29901 * 124.85999 * 85.09903 * 14 13 3 16 16 C 1.36055 * 108.80201 * 179.84044 * 15 14 13 17 17 C 1.39588 * 133.80599 * 180.09491 * 16 15 14 18 18 C 1.37680 * 119.73130 * 180.35447 * 17 16 15 19 19 C 1.50696 * 119.78907 * 179.97438 * 18 17 16 20 20 F 1.39908 * 109.47198 * 89.99801 * 19 18 17 21 21 F 1.39904 * 109.47106 * 209.99433 * 19 18 17 22 22 F 1.39898 * 109.47213 * 329.99923 * 19 18 17 23 23 C 1.38717 * 120.42190 * 359.97438 * 18 17 16 24 24 C 1.37911 * 120.47607 * 359.97438 * 23 18 17 25 25 C 1.38676 * 119.87403 * 0.03719 * 24 23 18 26 26 O 1.34237 * 124.85248 * 265.40535 * 14 13 3 27 27 H 1.09000 * 109.47096 * 64.28984 * 1 2 3 28 28 H 1.08997 * 109.47164 * 184.29132 * 1 2 3 29 29 H 1.09007 * 109.47182 * 304.29218 * 1 2 3 30 30 H 1.09000 * 109.47302 * 239.99523 * 2 1 3 31 31 H 1.09001 * 109.46716 * 120.00015 * 2 1 3 32 32 H 1.08995 * 109.46710 * 53.95165 * 4 3 2 33 33 H 1.08998 * 109.47251 * 173.95371 * 4 3 2 34 34 H 0.97004 * 119.99355 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47022 * 196.00094 * 13 3 2 36 36 H 1.09006 * 109.47144 * 315.99654 * 13 3 2 37 37 H 1.08000 * 120.13187 * 0.32654 * 17 16 15 38 38 H 1.08000 * 119.76303 * 180.02562 * 23 18 17 39 39 H 1.08002 * 120.06441 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4567 2.1424 -1.1258 5 6 1.9783 1.5777 -2.4220 6 1 2.6594 0.7397 -2.4106 7 6 1.5850 2.1303 -3.6224 8 7 0.7551 3.1504 -3.6362 9 14 2.2321 1.4308 -5.2291 10 1 1.3191 0.3613 -5.7066 11 1 2.3039 2.5107 -6.2459 12 1 3.5875 0.8642 -5.0121 13 6 1.7272 2.0467 1.2785 14 6 2.6899 1.5569 2.3294 15 7 3.8764 2.0443 2.5344 16 6 4.4588 1.3645 3.5590 17 6 5.6969 1.4534 4.1973 18 6 5.9973 0.5912 5.2279 19 6 7.3338 0.6857 5.9176 20 9 7.2406 1.5723 6.9959 21 9 7.7080 -0.5789 6.3847 22 9 8.2937 1.1515 5.0127 23 6 5.0775 -0.3638 5.6355 24 6 3.8499 -0.4624 5.0146 25 6 3.5308 0.3977 3.9747 26 8 2.4460 0.5508 3.1839 27 1 -0.3633 0.4458 -0.9259 28 1 -0.3633 -1.0248 0.0769 29 1 -0.3634 0.5790 0.8491 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 0.3696 2.0661 -1.1075 33 1 1.7489 3.1891 -1.0417 34 1 0.4782 3.5389 -4.4808 35 1 1.8341 3.1252 1.1621 36 1 0.7070 1.8135 1.5833 37 1 6.4165 2.1951 3.8837 38 1 5.3240 -1.0344 6.4453 39 1 3.1386 -1.2082 5.3376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151328597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:41 Heat of formation + Delta-G solvation = -121.966383 kcal Electronic energy + Delta-G solvation = -27301.616288 eV Core-core repulsion = 22795.377301 eV Total energy + Delta-G solvation = -4506.238987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.21866 -48.73093 -48.67352 -44.47878 -39.62436 -38.91607 -35.99376 -34.75500 -32.83050 -32.12341 -30.92894 -29.68786 -27.48784 -26.59470 -25.12124 -23.78043 -23.63607 -22.91131 -21.16250 -20.01635 -19.54481 -19.47491 -18.69081 -18.41407 -18.08951 -17.60352 -16.92042 -16.56344 -16.02078 -15.87040 -15.68610 -15.54391 -15.40656 -15.15314 -15.07159 -14.83745 -14.82172 -14.65573 -14.48527 -14.10782 -13.78421 -13.55213 -13.37713 -13.11995 -13.01626 -12.85679 -12.72304 -12.61322 -12.48939 -12.47900 -11.92393 -11.63669 -11.62138 -11.32162 -10.58623 -10.25829 -9.70893 -9.10336 -8.18563 -6.26275 -0.56368 -0.35096 1.13968 1.27687 1.41801 1.43558 1.52492 1.54275 2.18815 2.41206 2.46397 2.72051 3.02203 3.15039 3.23745 3.31975 3.34559 3.72710 3.81424 3.89513 4.08909 4.16949 4.22090 4.29265 4.42053 4.53982 4.63491 4.74743 4.86131 4.87511 4.95088 4.95889 5.01712 5.20808 5.27037 5.33677 5.47975 5.65995 6.02779 6.22168 6.44858 6.50959 6.86981 7.42129 8.91960 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.002563 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.364055 B =10923.547639 C =11590.689997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 N -0.543 5.543 4 C 0.208 3.792 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.136 3.864 14 C 0.280 3.720 15 N -0.494 5.494 16 C -0.007 4.007 17 C -0.018 4.018 18 C -0.184 4.184 19 C 0.523 3.477 20 F -0.175 7.175 21 F -0.169 7.169 22 F -0.181 7.181 23 C -0.045 4.045 24 C -0.077 4.077 25 C 0.016 3.984 26 O -0.211 6.211 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.066 0.934 32 H -0.002 1.002 33 H 0.008 0.992 34 H 0.264 0.736 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.189 0.811 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 -8.655 22.666 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.067 4.067 3 N -0.268 5.268 4 C 0.083 3.917 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.007 3.993 14 C 0.068 3.932 15 N -0.223 5.223 16 C -0.118 4.118 17 C -0.037 4.037 18 C -0.187 4.187 19 C 0.469 3.531 20 F -0.157 7.157 21 F -0.150 7.150 22 F -0.162 7.162 23 C -0.062 4.062 24 C -0.096 4.096 25 C -0.035 4.035 26 O -0.102 6.102 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.167 0.833 38 H 0.206 0.794 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.493 -8.045 22.164 24.741 hybrid contribution -0.645 -0.210 -0.803 1.051 sum 6.849 -8.254 21.361 23.902 Atomic orbital electron populations 1.22247 0.97107 1.02678 1.01540 1.22013 0.93984 0.89356 1.01318 1.62061 1.60412 1.03315 1.01021 1.19493 0.92954 0.92241 0.87041 1.21366 1.27178 1.16102 0.91129 0.92532 1.25737 0.95406 0.95335 1.02533 1.70048 1.34881 1.24590 1.27460 0.85511 0.78858 0.78031 0.78997 1.19728 1.20910 1.19562 1.20667 0.93427 0.99881 0.85362 1.26672 0.92596 0.83492 0.90453 1.70673 1.06637 1.29154 1.15834 1.20039 0.97605 0.97201 0.96956 1.20077 0.93443 0.97747 0.92394 1.19819 0.95472 1.02521 1.00850 1.17916 0.84630 0.73943 0.76645 1.93244 1.96352 1.69142 1.56931 1.93211 1.92469 1.40205 1.89117 1.93211 1.66695 1.88827 1.67462 1.21133 0.90227 0.95827 0.99059 1.20260 0.98312 0.98618 0.92362 1.21016 0.86103 1.00105 0.96297 1.84554 1.38370 1.47353 1.39918 0.93648 0.90621 0.92119 0.91666 0.91521 0.98413 0.97376 0.92702 0.86807 0.89215 0.83276 0.79357 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 9.15 71.98 0.66 -5.07 16 2 C 0.06 2.21 5.72 86.30 0.49 2.71 16 3 N -0.54 -22.33 4.62 -905.38 -4.18 -26.52 16 4 C 0.21 10.30 4.36 85.56 0.37 10.67 16 5 C -0.52 -28.41 8.58 25.60 0.22 -28.19 16 6 H 0.06 3.10 7.10 -2.91 -0.02 3.08 16 7 C 0.01 0.46 5.46 84.66 0.46 0.92 16 8 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.14 4.57 5.52 85.56 0.47 5.04 16 14 C 0.28 9.27 7.11 88.39 0.63 9.90 16 15 N -0.49 -17.53 11.34 -296.27 -3.36 -20.89 16 16 C -0.01 -0.20 7.24 39.32 0.28 0.08 16 17 C -0.02 -0.42 9.43 22.46 0.21 -0.21 16 18 C -0.18 -3.36 5.45 -19.88 -0.11 -3.46 16 19 C 0.52 8.92 3.36 71.23 0.24 9.16 16 20 F -0.18 -3.10 17.30 44.97 0.78 -2.32 16 21 F -0.17 -2.59 16.44 44.97 0.74 -1.85 16 22 F -0.18 -3.56 16.44 44.97 0.74 -2.82 16 23 C -0.04 -0.61 9.38 22.31 0.21 -0.40 16 24 C -0.08 -1.24 10.06 22.30 0.22 -1.02 16 25 C 0.02 0.41 7.43 22.88 0.17 0.58 16 26 O -0.21 -6.12 10.39 -9.96 -0.10 -6.23 16 27 H 0.04 1.76 6.46 -2.39 -0.02 1.74 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.74 6.26 -2.38 -0.01 1.73 16 30 H 0.06 2.61 7.00 -2.39 -0.02 2.59 16 31 H 0.07 2.17 7.14 -2.39 -0.02 2.15 16 32 H 0.00 -0.09 5.98 -2.39 -0.01 -0.10 16 33 H 0.01 0.44 7.83 -2.39 -0.02 0.42 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.11 3.86 7.73 -2.39 -0.02 3.84 16 36 H 0.09 2.59 6.04 -2.38 -0.01 2.57 16 37 H 0.15 3.39 7.59 -2.91 -0.02 3.37 16 38 H 0.19 1.15 7.58 -2.91 -0.02 1.13 16 39 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -65.08 340.11 2.57 -62.50 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.11 Total: 5.32 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 4.54 Total: 0.72 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -7.26 Total: -101.02 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.10 Total: -6.23 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 2.26 Total: -7.00 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.08 2.57 -62.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151328597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.465 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds