Wall clock time and date at job start Tue Mar 31 2020 16:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47049 * 89.99950 * 8 6 4 10 10 H 1.48499 * 109.47170 * 209.99777 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99617 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46901 * 110.99688 * 176.04721 * 12 2 1 14 14 C 1.46898 * 110.99897 * 299.99595 * 12 2 1 15 15 C 1.50702 * 109.47240 * 170.00393 * 14 12 2 16 16 N 1.29906 * 124.85781 * 89.99551 * 15 14 12 17 17 C 1.36061 * 108.80155 * 179.97438 * 16 15 14 18 18 C 1.39585 * 133.80356 * 180.02562 * 17 16 15 19 19 C 1.37683 * 119.73168 * 179.97438 * 18 17 16 20 20 C 1.50692 * 119.79043 * 179.97438 * 19 18 17 21 21 F 1.39909 * 109.47184 * 89.99947 * 20 19 18 22 22 F 1.39905 * 109.46987 * 209.99423 * 20 19 18 23 23 F 1.39896 * 109.47333 * 329.99820 * 20 19 18 24 24 C 1.38718 * 120.41730 * 359.97438 * 19 18 17 25 25 C 1.37915 * 120.47769 * 0.02562 * 24 19 18 26 26 C 1.38668 * 119.87468 * 0.02562 * 25 24 19 27 27 O 1.34226 * 124.85647 * 269.70212 * 15 14 12 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47195 * 59.99543 * 13 12 2 33 33 H 1.08997 * 109.47468 * 179.97438 * 13 12 2 34 34 H 1.08998 * 109.46987 * 299.99785 * 13 12 2 35 35 H 1.09000 * 109.47504 * 289.99876 * 14 12 2 36 36 H 1.09001 * 109.47202 * 50.00478 * 14 12 2 37 37 H 1.08006 * 120.13622 * 359.95062 * 18 17 16 38 38 H 1.07996 * 119.76178 * 180.02562 * 24 19 18 39 39 H 1.08006 * 120.06210 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8578 -0.8910 3.6160 16 7 2.9562 -0.8367 4.3074 17 6 2.8903 -1.7561 5.3082 18 6 3.7597 -2.1325 6.3333 19 6 3.3903 -3.1264 7.2115 20 6 4.3282 -3.5342 8.3183 21 9 4.0748 -2.7575 9.4541 22 9 4.1299 -4.8850 8.6235 23 9 5.6503 -3.3385 7.9051 24 6 2.1603 -3.7549 7.0839 25 6 1.2913 -3.3933 6.0758 26 6 1.6475 -2.3950 5.1818 27 8 1.0354 -1.8236 4.1214 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7083 1.1609 -3.4845 32 1 3.9187 0.2051 1.1592 33 1 3.8209 -1.3109 2.0863 34 1 3.8029 -1.3532 0.3068 35 1 2.0519 0.9346 2.5281 36 1 0.4722 0.1325 2.3563 37 1 4.7186 -1.6462 6.4370 38 1 1.8811 -4.5330 7.7788 39 1 0.3351 -3.8868 5.9829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151853202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:51 Heat of formation + Delta-G solvation = -97.001935 kcal Electronic energy + Delta-G solvation = -27350.994258 eV Core-core repulsion = 22845.837810 eV Total energy + Delta-G solvation = -4505.156447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.45204 -47.96569 -47.90790 -43.41647 -38.63027 -37.26118 -34.87658 -33.03027 -31.85768 -30.71774 -29.22180 -28.11694 -26.17983 -24.97318 -23.93834 -22.73475 -22.53522 -21.54450 -19.69912 -19.09743 -18.78228 -18.68688 -17.78875 -16.94019 -16.76073 -16.29686 -15.28880 -15.17105 -14.89460 -14.70444 -14.50720 -14.33475 -14.23038 -14.12248 -14.06438 -14.04979 -14.02057 -13.63014 -12.85962 -12.70228 -12.55237 -12.35828 -12.02387 -11.85225 -11.62619 -11.30631 -11.08162 -10.84595 -10.72562 -10.61551 -10.28625 -10.18056 -10.01891 -9.33962 -9.05428 -8.74889 -8.50732 -7.49729 -6.11294 -4.16236 0.36870 0.55896 2.20178 2.26835 2.41161 3.10751 3.26251 3.31766 3.32996 3.36186 3.58508 3.91723 4.11262 4.17226 4.33836 4.56522 4.66893 4.79069 4.91367 5.01097 5.21506 5.30643 5.48957 5.62808 5.66023 5.72438 5.88617 5.99476 6.08184 6.12876 6.30572 6.66549 6.70561 6.89380 6.95517 7.31154 7.45698 7.54521 7.71310 7.97723 8.14369 8.37584 8.88661 9.49142 10.95617 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.002418 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.158964 B =11579.083307 C =11917.435840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.532 5.532 13 C 0.033 3.967 14 C 0.126 3.874 15 C 0.299 3.701 16 N -0.483 5.483 17 C 0.027 3.973 18 C -0.009 4.009 19 C -0.189 4.189 20 C 0.516 3.484 21 F -0.176 7.176 22 F -0.175 7.175 23 F -0.175 7.175 24 C -0.063 4.063 25 C -0.083 4.083 26 C 0.030 3.970 27 O -0.198 6.198 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -6.787 20.819 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.110 3.890 3 H 0.024 0.976 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.115 4.115 14 C -0.003 4.003 15 C 0.088 3.912 16 N -0.212 5.212 17 C -0.085 4.085 18 C -0.028 4.028 19 C -0.191 4.191 20 C 0.462 3.538 21 F -0.157 7.157 22 F -0.157 7.157 23 F -0.156 7.156 24 C -0.082 4.082 25 C -0.102 4.102 26 C -0.022 4.022 27 O -0.089 6.089 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.329 -6.728 20.556 21.754 hybrid contribution 0.238 -0.162 -0.562 0.632 sum 2.567 -6.890 19.994 21.303 Atomic orbital electron populations 1.21930 0.97423 1.00067 1.00199 1.19343 0.92502 0.92302 0.84879 0.97584 1.21087 1.31452 1.12504 0.89436 0.91694 1.24915 0.95083 0.95024 0.99060 1.69873 1.36674 1.22882 1.23671 0.86476 0.79272 0.79280 0.82271 1.20601 1.21256 1.19872 1.62227 1.10641 1.52242 1.00764 1.22317 0.87485 0.99997 1.01729 1.20847 1.03713 0.91509 0.84241 1.27016 0.82610 0.86861 0.94761 1.70792 1.22000 1.22077 1.06324 1.19727 0.94675 0.96733 0.97383 1.19932 0.98849 0.93802 0.90213 1.19657 0.97270 1.03177 0.99040 1.18070 0.79338 0.74786 0.81618 1.93239 1.93985 1.74971 1.53486 1.93196 1.94882 1.33736 1.93847 1.93211 1.37502 1.94779 1.90131 1.20633 0.91315 0.98797 0.97415 1.19802 1.01492 0.95853 0.93045 1.20533 0.93384 0.97959 0.90309 1.84635 1.43582 1.43855 1.36803 0.89175 0.94308 0.97171 0.92808 0.96050 0.93350 0.90130 0.90402 0.87075 0.83449 0.83196 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.76 37.16 0.33 -2.79 16 2 C 0.21 5.07 2.06 -68.86 -0.14 4.93 16 3 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 4 C -0.51 -13.23 7.93 -34.44 -0.27 -13.50 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.37 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.53 -10.90 4.61 -237.72 -1.10 -12.00 16 13 C 0.03 0.65 9.07 60.07 0.54 1.19 16 14 C 0.13 2.14 5.40 -4.98 -0.03 2.12 16 15 C 0.30 4.93 6.89 -13.09 -0.09 4.84 16 16 N -0.48 -7.93 10.44 -8.70 -0.09 -8.02 16 17 C 0.03 0.39 7.24 -84.71 -0.61 -0.23 16 18 C -0.01 -0.11 9.43 -39.28 -0.37 -0.48 16 19 C -0.19 -1.91 5.45 -104.65 -0.57 -2.48 16 20 C 0.52 4.89 3.36 36.00 0.12 5.01 16 21 F -0.18 -1.71 17.30 2.25 0.04 -1.67 16 22 F -0.18 -1.61 16.44 2.25 0.04 -1.57 16 23 F -0.17 -1.78 16.44 2.25 0.04 -1.74 16 24 C -0.06 -0.56 9.38 -39.52 -0.37 -0.93 16 25 C -0.08 -0.84 10.06 -39.54 -0.40 -1.24 16 26 C 0.03 0.42 7.43 -38.65 -0.29 0.13 16 27 O -0.20 -3.14 10.77 3.63 0.04 -3.10 16 28 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.01 0.19 6.20 -51.93 -0.32 -0.14 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.89 6.49 -51.93 -0.34 0.56 16 34 H 0.08 1.67 6.23 -51.93 -0.32 1.35 16 35 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 36 H 0.11 1.77 5.83 -51.93 -0.30 1.47 16 37 H 0.15 1.55 7.59 -52.48 -0.40 1.16 16 38 H 0.15 0.89 7.58 -52.49 -0.40 0.50 16 39 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -28.04 337.26 -6.57 -34.61 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -3.98 Total: -1.65 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.24 Total: -1.91 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.56 Total: -43.71 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.11 Total: -4.98 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.04 -6.57 -34.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151853202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.395 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds