Wall clock time and date at job start Tue Mar 31 2020 16:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47049 * 89.99950 * 8 6 4 10 10 H 1.48499 * 109.47170 * 209.99777 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99617 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46901 * 110.99688 * 176.04721 * 12 2 1 14 14 C 1.46898 * 110.99897 * 299.99595 * 12 2 1 15 15 C 1.50702 * 109.47240 * 170.00393 * 14 12 2 16 16 N 1.29906 * 124.85781 * 89.99551 * 15 14 12 17 17 C 1.36061 * 108.80155 * 179.97438 * 16 15 14 18 18 C 1.39585 * 133.80356 * 180.02562 * 17 16 15 19 19 C 1.37683 * 119.73168 * 179.97438 * 18 17 16 20 20 C 1.50692 * 119.79043 * 179.97438 * 19 18 17 21 21 F 1.39909 * 109.47184 * 89.99947 * 20 19 18 22 22 F 1.39905 * 109.46987 * 209.99423 * 20 19 18 23 23 F 1.39896 * 109.47333 * 329.99820 * 20 19 18 24 24 C 1.38718 * 120.41730 * 359.97438 * 19 18 17 25 25 C 1.37915 * 120.47769 * 0.02562 * 24 19 18 26 26 C 1.38668 * 119.87468 * 0.02562 * 25 24 19 27 27 O 1.34226 * 124.85647 * 269.70212 * 15 14 12 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47195 * 59.99543 * 13 12 2 33 33 H 1.08997 * 109.47468 * 179.97438 * 13 12 2 34 34 H 1.08998 * 109.46987 * 299.99785 * 13 12 2 35 35 H 1.09000 * 109.47504 * 289.99876 * 14 12 2 36 36 H 1.09001 * 109.47202 * 50.00478 * 14 12 2 37 37 H 1.08006 * 120.13622 * 359.95062 * 18 17 16 38 38 H 1.07996 * 119.76178 * 180.02562 * 24 19 18 39 39 H 1.08006 * 120.06210 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8578 -0.8910 3.6160 16 7 2.9562 -0.8367 4.3074 17 6 2.8903 -1.7561 5.3082 18 6 3.7597 -2.1325 6.3333 19 6 3.3903 -3.1264 7.2115 20 6 4.3282 -3.5342 8.3183 21 9 4.0748 -2.7575 9.4541 22 9 4.1299 -4.8850 8.6235 23 9 5.6503 -3.3385 7.9051 24 6 2.1603 -3.7549 7.0839 25 6 1.2913 -3.3933 6.0758 26 6 1.6475 -2.3950 5.1818 27 8 1.0354 -1.8236 4.1214 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7083 1.1609 -3.4845 32 1 3.9187 0.2051 1.1592 33 1 3.8209 -1.3109 2.0863 34 1 3.8029 -1.3532 0.3068 35 1 2.0519 0.9346 2.5281 36 1 0.4722 0.1325 2.3563 37 1 4.7186 -1.6462 6.4370 38 1 1.8811 -4.5330 7.7788 39 1 0.3351 -3.8868 5.9829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151853202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:50 Heat of formation + Delta-G solvation = -114.611738 kcal Electronic energy + Delta-G solvation = -27351.757876 eV Core-core repulsion = 22845.837810 eV Total energy + Delta-G solvation = -4505.920066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.21723 -48.72901 -48.67223 -44.49795 -39.58668 -38.84222 -36.03863 -34.87221 -32.78620 -31.95831 -30.89368 -29.44219 -27.27714 -26.66954 -25.45116 -23.66236 -23.60106 -22.79909 -21.38953 -20.00682 -19.54292 -19.48513 -18.69077 -18.47561 -18.08564 -17.65662 -16.94181 -16.22578 -15.85187 -15.70994 -15.67979 -15.64221 -15.41069 -15.19104 -15.08461 -14.83684 -14.82012 -14.53574 -14.41646 -14.06305 -13.82862 -13.70036 -13.27132 -13.00868 -12.95112 -12.74651 -12.73200 -12.60387 -12.44506 -12.11167 -12.00784 -11.86823 -11.68166 -10.95518 -10.52241 -10.26035 -9.72534 -9.16289 -8.12297 -6.23296 -0.57888 -0.35391 1.11294 1.28523 1.43504 1.45100 1.52405 1.54368 2.17360 2.40422 2.44886 2.70329 3.00534 3.16413 3.23753 3.33831 3.35011 3.69982 3.78805 3.94674 4.07340 4.23227 4.30952 4.46633 4.50312 4.67004 4.73736 4.84671 4.86286 4.94772 4.97361 5.01043 5.07853 5.19327 5.24928 5.46960 5.68242 5.73015 6.18464 6.25117 6.40269 6.54083 6.87684 7.45320 8.93551 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.002418 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.158964 B =11579.083307 C =11917.435840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.220 3.780 3 H -0.020 1.020 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.540 5.540 13 C 0.043 3.957 14 C 0.132 3.868 15 C 0.282 3.718 16 N -0.494 5.494 17 C -0.004 4.004 18 C -0.015 4.015 19 C -0.184 4.184 20 C 0.523 3.477 21 F -0.175 7.175 22 F -0.169 7.169 23 F -0.179 7.179 24 C -0.044 4.044 25 C -0.080 4.080 26 C 0.014 3.986 27 O -0.209 6.209 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.019 0.981 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.188 0.812 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -8.508 22.647 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.114 3.886 3 H -0.002 1.002 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.266 5.266 13 C -0.105 4.105 14 C 0.003 3.997 15 C 0.070 3.930 16 N -0.225 5.225 17 C -0.115 4.115 18 C -0.033 4.033 19 C -0.187 4.187 20 C 0.469 3.531 21 F -0.157 7.157 22 F -0.151 7.151 23 F -0.161 7.161 24 C -0.062 4.062 25 C -0.098 4.098 26 C -0.037 4.037 27 O -0.100 6.100 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.171 0.829 38 H 0.205 0.795 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.189 -8.463 22.412 24.057 hybrid contribution 0.330 0.295 -0.924 1.024 sum 2.518 -8.168 21.488 23.126 Atomic orbital electron populations 1.21747 0.96617 0.99707 1.00483 1.19121 0.93072 0.90760 0.85677 1.00240 1.21368 1.31412 1.12421 0.90802 0.92400 1.25616 0.95324 0.95700 1.01629 1.69985 1.37484 1.23908 1.24187 0.85569 0.78790 0.78265 0.79078 1.20232 1.20946 1.19553 1.62076 1.10941 1.52465 1.01160 1.22186 0.87249 0.99680 1.01385 1.20750 1.04139 0.91740 0.83075 1.26591 0.83239 0.87934 0.95219 1.70685 1.22056 1.22771 1.06953 1.19976 0.95997 0.97410 0.98144 1.20068 0.98905 0.94391 0.89980 1.19825 0.97907 1.02425 0.98533 1.17899 0.78941 0.74932 0.81305 1.93245 1.93953 1.75044 1.53430 1.93213 1.94816 1.33270 1.93773 1.93209 1.37859 1.94826 1.90185 1.21114 0.89979 0.98276 0.96816 1.20258 1.02902 0.94638 0.92020 1.21058 0.93261 0.98898 0.90489 1.84578 1.43779 1.43958 1.37668 0.91653 0.94815 0.94113 0.92797 0.96264 0.92299 0.91726 0.89798 0.86183 0.82855 0.79474 0.80483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.76 71.98 0.63 -5.16 16 2 C 0.22 10.57 2.06 44.17 0.09 10.67 16 3 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 4 C -0.52 -27.73 7.93 25.60 0.20 -27.53 16 5 H 0.06 3.10 6.39 -2.91 -0.02 3.08 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -50.70 11.32 21.45 0.24 -50.46 16 8 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.54 -22.40 4.61 -906.02 -4.18 -26.58 16 13 C 0.04 1.73 9.07 127.69 1.16 2.89 16 14 C 0.13 4.49 5.40 85.56 0.46 4.95 16 15 C 0.28 9.29 6.89 88.39 0.61 9.90 16 16 N -0.49 -16.26 10.44 -296.28 -3.09 -19.35 16 17 C 0.00 -0.11 7.24 39.32 0.28 0.17 16 18 C -0.01 -0.32 9.43 22.46 0.21 -0.11 16 19 C -0.18 -3.23 5.45 -19.88 -0.11 -3.34 16 20 C 0.52 8.50 3.36 71.23 0.24 8.74 16 21 F -0.18 -2.97 17.30 44.97 0.78 -2.19 16 22 F -0.17 -2.54 16.44 44.97 0.74 -1.80 16 23 F -0.18 -3.30 16.44 44.97 0.74 -2.56 16 24 C -0.04 -0.61 9.38 22.31 0.21 -0.40 16 25 C -0.08 -1.36 10.06 22.30 0.22 -1.14 16 26 C 0.01 0.37 7.43 22.88 0.17 0.54 16 27 O -0.21 -6.52 10.77 -9.91 -0.11 -6.63 16 28 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.55 6.20 -2.39 -0.01 1.53 16 31 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 2.20 6.49 -2.39 -0.02 2.19 16 34 H 0.06 2.75 6.23 -2.39 -0.01 2.73 16 35 H 0.08 2.74 8.12 -2.39 -0.02 2.72 16 36 H 0.12 3.79 5.83 -2.39 -0.01 3.77 16 37 H 0.15 3.11 7.59 -2.91 -0.02 3.08 16 38 H 0.19 1.22 7.58 -2.91 -0.02 1.20 16 39 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -60.92 337.26 3.09 -57.83 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.11 Total: 5.51 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.83 Total: 1.52 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -7.03 Total: -96.39 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.11 Total: -6.63 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 2.26 Total: -6.55 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.92 3.09 -57.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151853202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.780 kcal (2) G-P(sol) polarization free energy of solvation -60.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds