Wall clock time and date at job start Tue Mar 31 2020 14:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30126 * 121.06216 * 2 1 4 4 S 1.69954 * 105.76620 * 180.02562 * 3 2 1 5 5 C 1.72306 * 94.57201 * 359.97438 * 4 3 2 6 6 N 1.38314 * 127.50332 * 179.97438 * 5 4 3 7 7 C 1.46963 * 110.99678 * 123.83007 * 6 5 4 8 8 C 1.53055 * 109.36395 * 176.81348 * 7 6 5 9 9 N 1.46956 * 109.36416 * 58.39725 * 8 7 6 10 10 C 1.46899 * 110.99902 * 176.81045 * 9 8 7 11 11 C 1.53000 * 109.47222 * 293.79877 * 10 9 8 12 12 C 1.52999 * 109.46884 * 179.97438 * 11 10 9 13 13 S 1.81005 * 109.46970 * 180.02562 * 12 11 10 14 14 C 1.76197 * 99.99953 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31629 * 119.99669 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47094 * 60.00375 * 18 16 14 20 20 H 1.48498 * 109.47145 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47127 * 300.00098 * 18 16 14 22 22 C 1.46950 * 110.88187 * 300.68087 * 9 8 7 23 23 C 1.46956 * 111.00175 * 0.03191 * 6 5 4 24 24 N 1.31289 * 121.06001 * 180.30549 * 2 1 3 25 25 H 1.08998 * 109.47633 * 90.02326 * 1 2 3 26 26 H 1.09003 * 109.47275 * 210.02673 * 1 2 3 27 27 H 1.09001 * 109.46885 * 330.02493 * 1 2 3 28 28 H 1.09003 * 109.48613 * 296.77864 * 7 6 5 29 29 H 1.08994 * 109.49091 * 56.84318 * 7 6 5 30 30 H 1.08994 * 109.48838 * 298.43235 * 8 7 6 31 31 H 1.09004 * 109.48400 * 178.36395 * 8 7 6 32 32 H 1.09001 * 109.46732 * 53.80062 * 10 9 8 33 33 H 1.09005 * 109.46849 * 173.80089 * 10 9 8 34 34 H 1.08993 * 109.47157 * 300.00379 * 11 10 9 35 35 H 1.09005 * 109.47036 * 60.00325 * 11 10 9 36 36 H 1.08997 * 109.47313 * 299.99755 * 12 11 10 37 37 H 1.08994 * 109.47690 * 60.00412 * 12 11 10 38 38 H 0.97006 * 119.99798 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.48721 * 299.35316 * 22 9 8 40 40 H 1.09004 * 109.49418 * 179.28931 * 22 9 8 41 41 H 1.09000 * 109.48237 * 303.15179 * 23 6 5 42 42 H 1.08993 * 109.48945 * 63.19226 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6663 -0.0007 5 6 3.4971 -1.0266 -0.0002 6 7 4.4185 -2.0582 -0.0010 7 6 4.2007 -2.9596 1.1391 8 6 5.1865 -4.1276 1.0580 9 7 6.5605 -3.6064 1.0574 10 6 7.5391 -4.7020 1.0567 11 6 7.4455 -5.4703 2.3765 12 6 8.4643 -6.6118 2.3754 13 16 8.3530 -7.5212 3.9364 14 6 9.5969 -8.7402 3.6697 15 1 10.1533 -8.7505 2.7441 16 6 9.8626 -9.6867 4.6496 17 7 9.1849 -9.6738 5.7779 18 14 11.1819 -10.9786 4.3671 19 1 12.4902 -10.3107 4.1494 20 1 11.2695 -11.8647 5.5555 21 1 10.8342 -11.7879 3.1715 22 6 6.7782 -2.7051 -0.0826 23 6 5.7926 -1.5370 -0.0016 24 7 2.1843 -1.1246 -0.0060 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 4.3589 -2.4141 2.0694 29 1 3.1805 -3.3422 1.1105 30 1 5.0102 -4.6893 0.1407 31 1 5.0462 -4.7822 1.9183 32 1 7.3280 -5.3771 0.2274 33 1 8.5431 -4.2923 0.9452 34 1 7.6565 -4.7952 3.2057 35 1 6.4415 -5.8800 2.4879 36 1 8.2528 -7.2869 1.5462 37 1 9.4683 -6.2026 2.2638 38 1 9.3708 -10.3351 6.4629 39 1 6.6200 -3.2506 -1.0129 40 1 7.7985 -2.3224 -0.0541 41 1 5.9327 -0.8825 -0.8618 42 1 5.9687 -0.9750 0.9155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177841230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:56 Heat of formation + Delta-G solvation = 59.857378 kcal Electronic energy + Delta-G solvation = -22384.261439 eV Core-core repulsion = 19038.253236 eV Total energy + Delta-G solvation = -3346.008203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.89190 -39.72853 -36.74970 -33.34011 -32.44603 -31.92153 -31.53628 -30.05267 -28.06882 -25.69442 -24.62529 -24.47565 -23.23864 -21.06091 -20.41180 -20.05882 -19.20781 -17.61689 -17.41143 -16.25656 -15.67187 -15.51442 -15.36632 -14.92785 -14.87091 -14.81512 -14.45880 -14.16413 -13.89892 -13.13472 -13.03352 -12.93548 -12.84003 -12.30233 -12.16671 -12.12588 -11.85288 -11.72611 -11.69673 -11.44676 -11.24312 -11.05908 -11.00937 -10.82020 -10.65243 -10.35138 -10.09947 -9.74723 -9.57165 -9.06673 -8.90370 -8.57545 -8.32776 -6.54717 -6.24203 -3.94692 0.08614 0.66100 1.34154 2.17931 2.58473 3.19395 3.21932 3.26642 3.43867 3.71272 3.83891 4.21099 4.26668 4.50078 4.58963 4.75423 4.84647 4.90376 4.97101 5.08951 5.10460 5.11699 5.18417 5.24476 5.29482 5.36411 5.42326 5.46445 5.56497 5.59314 5.65237 5.66301 5.85405 5.95690 5.99256 6.11033 6.28194 6.52006 6.66764 6.80631 6.86746 7.27334 7.58693 8.34781 9.21992 10.83865 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.036089 B = 0.001834 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.678685 B =15263.260303 C =15711.162850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.288 3.712 3 N -0.490 5.490 4 S 0.183 5.817 5 C 0.279 3.721 6 N -0.431 5.431 7 C 0.066 3.934 8 C 0.050 3.950 9 N -0.541 5.541 10 C 0.061 3.939 11 C -0.094 4.094 12 C -0.113 4.113 13 S -0.131 6.131 14 C -0.517 4.517 15 H 0.072 0.928 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.059 3.941 23 C 0.045 3.955 24 N -0.539 5.539 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.215 19.713 -13.353 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.002 4.002 3 N -0.322 5.322 4 S 0.320 5.680 5 C -0.100 4.100 6 N -0.151 5.151 7 C -0.060 4.060 8 C -0.078 4.078 9 N -0.266 5.266 10 C -0.067 4.067 11 C -0.133 4.133 12 C -0.263 4.263 13 S 0.097 5.903 14 C -0.666 4.666 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.200 1.200 22 C -0.070 4.070 23 C -0.083 4.083 24 N -0.268 5.268 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.640 20.963 -12.269 27.382 hybrid contribution 1.198 -1.971 -1.506 2.755 sum -11.442 18.992 -13.775 26.103 Atomic orbital electron populations 1.20426 0.83606 1.04524 1.04261 1.23446 1.00099 0.82175 0.94447 1.77530 0.98002 1.25906 1.30749 1.85093 1.13159 1.01292 1.68444 1.27054 0.92407 0.95850 0.94668 1.58203 1.02566 1.12667 1.41697 1.22508 1.01549 0.93007 0.88986 1.22323 0.87221 0.95339 1.02923 1.62201 1.03277 1.19347 1.41753 1.22197 0.95242 0.91144 0.98151 1.21288 0.99392 0.96100 0.96504 1.23229 1.00463 0.99273 1.03295 1.84629 1.52254 1.35610 1.17833 1.22646 1.22409 1.15916 1.05593 0.91028 1.25015 0.96791 0.97450 0.94534 1.70012 1.39495 1.35008 1.05985 0.86226 0.81089 0.80389 0.77845 1.19936 1.20809 1.19961 1.22128 0.98713 0.93103 0.93053 1.22684 0.84041 0.98077 1.03457 1.67379 1.03678 1.29791 1.25957 0.89330 0.89090 0.89476 0.91649 0.88055 0.93252 0.88055 0.94490 0.90458 0.90677 0.91630 0.92322 0.92102 0.92243 0.93307 0.88738 0.88752 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.42 36.00 0.37 -0.06 16 2 C 0.29 3.01 7.56 -159.04 -1.20 1.80 16 3 N -0.49 -5.56 12.15 29.54 0.36 -5.20 16 4 S 0.18 1.78 22.19 -107.50 -2.38 -0.61 16 5 C 0.28 2.90 7.02 -86.35 -0.61 2.29 16 6 N -0.43 -4.06 4.77 -174.37 -0.83 -4.90 16 7 C 0.07 0.62 5.53 -3.76 -0.02 0.60 16 8 C 0.05 0.49 5.41 -3.77 -0.02 0.47 16 9 N -0.54 -5.52 4.71 -234.47 -1.10 -6.62 16 10 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16 11 C -0.09 -1.41 5.15 -26.73 -0.14 -1.55 16 12 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 13 S -0.13 -3.37 21.44 -107.50 -2.30 -5.67 16 14 C -0.52 -14.65 9.50 30.94 0.29 -14.35 16 15 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 17 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 18 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.06 0.47 5.61 -3.77 -0.02 0.45 16 23 C 0.04 0.34 4.72 -3.77 -0.02 0.32 16 24 N -0.54 -6.12 10.44 -14.57 -0.15 -6.27 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.95 8.01 -51.93 -0.42 0.53 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.03 6.34 -51.93 -0.33 0.71 16 32 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.98 6.49 -51.93 -0.34 0.65 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.09 0.59 7.74 -51.93 -0.40 0.18 16 42 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -32.44 367.03 -12.95 -45.39 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.51 Total: -3.55 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.26 Total: -9.38 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -1.00 Total: -48.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -4.69 Total: -6.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.44 -12.95 -45.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177841230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.249 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds