Wall clock time and date at job start Tue Mar 31 2020 14:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30126 * 121.06216 * 2 1 4 4 S 1.69954 * 105.76620 * 180.02562 * 3 2 1 5 5 C 1.72306 * 94.57201 * 359.97438 * 4 3 2 6 6 N 1.38314 * 127.50332 * 179.97438 * 5 4 3 7 7 C 1.46963 * 110.99678 * 123.83007 * 6 5 4 8 8 C 1.53055 * 109.36395 * 176.81348 * 7 6 5 9 9 N 1.46956 * 109.36416 * 58.39725 * 8 7 6 10 10 C 1.46899 * 110.99902 * 176.81045 * 9 8 7 11 11 C 1.53000 * 109.47222 * 293.79877 * 10 9 8 12 12 C 1.52999 * 109.46884 * 179.97438 * 11 10 9 13 13 S 1.81005 * 109.46970 * 180.02562 * 12 11 10 14 14 C 1.76197 * 99.99953 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31629 * 119.99669 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47094 * 60.00375 * 18 16 14 20 20 H 1.48498 * 109.47145 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47127 * 300.00098 * 18 16 14 22 22 C 1.46950 * 110.88187 * 300.68087 * 9 8 7 23 23 C 1.46956 * 111.00175 * 0.03191 * 6 5 4 24 24 N 1.31289 * 121.06001 * 180.30549 * 2 1 3 25 25 H 1.08998 * 109.47633 * 90.02326 * 1 2 3 26 26 H 1.09003 * 109.47275 * 210.02673 * 1 2 3 27 27 H 1.09001 * 109.46885 * 330.02493 * 1 2 3 28 28 H 1.09003 * 109.48613 * 296.77864 * 7 6 5 29 29 H 1.08994 * 109.49091 * 56.84318 * 7 6 5 30 30 H 1.08994 * 109.48838 * 298.43235 * 8 7 6 31 31 H 1.09004 * 109.48400 * 178.36395 * 8 7 6 32 32 H 1.09001 * 109.46732 * 53.80062 * 10 9 8 33 33 H 1.09005 * 109.46849 * 173.80089 * 10 9 8 34 34 H 1.08993 * 109.47157 * 300.00379 * 11 10 9 35 35 H 1.09005 * 109.47036 * 60.00325 * 11 10 9 36 36 H 1.08997 * 109.47313 * 299.99755 * 12 11 10 37 37 H 1.08994 * 109.47690 * 60.00412 * 12 11 10 38 38 H 0.97006 * 119.99798 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.48721 * 299.35316 * 22 9 8 40 40 H 1.09004 * 109.49418 * 179.28931 * 22 9 8 41 41 H 1.09000 * 109.48237 * 303.15179 * 23 6 5 42 42 H 1.08993 * 109.48945 * 63.19226 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6663 -0.0007 5 6 3.4971 -1.0266 -0.0002 6 7 4.4185 -2.0582 -0.0010 7 6 4.2007 -2.9596 1.1391 8 6 5.1865 -4.1276 1.0580 9 7 6.5605 -3.6064 1.0574 10 6 7.5391 -4.7020 1.0567 11 6 7.4455 -5.4703 2.3765 12 6 8.4643 -6.6118 2.3754 13 16 8.3530 -7.5212 3.9364 14 6 9.5969 -8.7402 3.6697 15 1 10.1533 -8.7505 2.7441 16 6 9.8626 -9.6867 4.6496 17 7 9.1849 -9.6738 5.7779 18 14 11.1819 -10.9786 4.3671 19 1 12.4902 -10.3107 4.1494 20 1 11.2695 -11.8647 5.5555 21 1 10.8342 -11.7879 3.1715 22 6 6.7782 -2.7051 -0.0826 23 6 5.7926 -1.5370 -0.0016 24 7 2.1843 -1.1246 -0.0060 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 4.3589 -2.4141 2.0694 29 1 3.1805 -3.3422 1.1105 30 1 5.0102 -4.6893 0.1407 31 1 5.0462 -4.7822 1.9183 32 1 7.3280 -5.3771 0.2274 33 1 8.5431 -4.2923 0.9452 34 1 7.6565 -4.7952 3.2057 35 1 6.4415 -5.8800 2.4879 36 1 8.2528 -7.2869 1.5462 37 1 9.4683 -6.2026 2.2638 38 1 9.3708 -10.3351 6.4629 39 1 6.6200 -3.2506 -1.0129 40 1 7.7985 -2.3224 -0.0541 41 1 5.9327 -0.8825 -0.8618 42 1 5.9687 -0.9750 0.9155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177841230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:53 Heat of formation + Delta-G solvation = 38.736079 kcal Electronic energy + Delta-G solvation = -22385.177328 eV Core-core repulsion = 19038.253236 eV Total energy + Delta-G solvation = -3346.924092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.64152 -40.48447 -37.62063 -34.61738 -34.36577 -32.80339 -32.24948 -30.66923 -29.01798 -27.76026 -25.72664 -25.22219 -24.03683 -22.19555 -21.18873 -20.80917 -19.95438 -19.52652 -18.29844 -17.02969 -16.88015 -16.67193 -16.48900 -16.07893 -15.91801 -15.74001 -15.55736 -15.11638 -15.06686 -14.60979 -13.77932 -13.65513 -13.54112 -13.52062 -13.23280 -13.11092 -12.91181 -12.88398 -12.71894 -12.65896 -12.51371 -12.43278 -12.24947 -12.08536 -11.79678 -11.55666 -11.31275 -11.11644 -10.88786 -10.48517 -10.28845 -9.64456 -9.37947 -8.64171 -8.35847 -6.11556 -0.68430 -0.09899 0.59831 1.32432 1.41493 1.42550 1.48503 1.76874 1.88795 2.30113 2.78995 2.98327 3.15611 3.34576 3.58311 3.78995 3.89342 4.02730 4.11588 4.16388 4.25624 4.29347 4.33667 4.42392 4.46008 4.53650 4.61058 4.65411 4.70460 4.75145 4.80701 4.82244 4.88128 4.93541 5.11463 5.21284 5.26668 5.33776 5.38120 5.41026 5.96108 6.02182 6.19265 6.52155 7.06441 8.73107 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.036089 B = 0.001834 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.678685 B =15263.260303 C =15711.162850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.282 3.718 3 N -0.518 5.518 4 S 0.202 5.798 5 C 0.273 3.727 6 N -0.435 5.435 7 C 0.074 3.926 8 C 0.054 3.946 9 N -0.547 5.547 10 C 0.074 3.926 11 C -0.083 4.083 12 C -0.088 4.088 13 S -0.199 6.199 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.014 3.986 17 N -0.907 5.907 18 Si 0.993 3.007 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.265 1.265 22 C 0.060 3.940 23 C 0.044 3.956 24 N -0.560 5.560 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.271 0.729 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 20.216 -14.856 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.007 4.007 3 N -0.351 5.351 4 S 0.339 5.661 5 C -0.105 4.105 6 N -0.155 5.155 7 C -0.053 4.053 8 C -0.075 4.075 9 N -0.272 5.272 10 C -0.056 4.056 11 C -0.122 4.122 12 C -0.237 4.237 13 S 0.029 5.971 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.544 5.544 18 Si 0.815 3.185 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.190 1.190 22 C -0.068 4.068 23 C -0.082 4.082 24 N -0.290 5.290 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.006 21.481 -13.782 28.205 hybrid contribution 0.960 -2.047 -1.084 2.507 sum -11.045 19.434 -14.866 26.845 Atomic orbital electron populations 1.20585 0.81373 1.05398 1.05360 1.24024 1.01517 0.81718 0.93485 1.77494 0.98925 1.26703 1.31938 1.84911 1.12418 1.00463 1.68266 1.27199 0.92489 0.96392 0.94407 1.58237 1.03253 1.12605 1.41436 1.22394 1.01217 0.92792 0.88935 1.22264 0.87295 0.95405 1.02497 1.62145 1.02948 1.18928 1.43182 1.21979 0.96357 0.91417 0.95809 1.21169 0.97823 0.94750 0.98434 1.23160 1.02046 0.99540 0.98973 1.84647 1.52333 1.36748 1.23354 1.23018 1.22945 1.16764 1.05880 0.90865 1.26065 0.99166 0.99746 0.94089 1.70152 1.41210 1.36043 1.06970 0.85085 0.78004 0.77342 0.78115 1.18894 1.20101 1.18963 1.22208 0.99816 0.92650 0.92087 1.22787 0.82886 0.98148 1.04413 1.67444 1.04258 1.30502 1.26787 0.87994 0.88309 0.88450 0.91871 0.88368 0.93398 0.88796 0.94094 0.89312 0.91461 0.91857 0.92067 0.91723 0.92023 0.93159 0.86939 0.87069 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.42 71.23 0.74 -0.04 16 2 C 0.28 5.66 7.56 139.39 1.05 6.71 16 3 N -0.52 -11.37 12.15 -60.44 -0.73 -12.10 16 4 S 0.20 3.70 22.19 -56.49 -1.25 2.45 16 5 C 0.27 5.39 7.02 178.86 1.26 6.65 16 6 N -0.43 -7.59 4.77 -705.58 -3.37 -10.96 16 7 C 0.07 1.30 5.53 86.31 0.48 1.78 16 8 C 0.05 1.00 5.41 86.31 0.47 1.46 16 9 N -0.55 -10.10 4.71 -895.71 -4.22 -14.32 16 10 C 0.07 1.56 4.96 86.30 0.43 1.99 16 11 C -0.08 -2.40 5.15 30.59 0.16 -2.25 16 12 C -0.09 -3.32 5.67 71.98 0.41 -2.91 16 13 S -0.20 -10.40 21.44 -56.49 -1.21 -11.61 16 14 C -0.54 -30.69 9.50 67.96 0.65 -30.05 16 15 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 16 C 0.01 0.80 5.49 84.86 0.47 1.27 16 17 N -0.91 -54.48 13.22 21.65 0.29 -54.20 16 18 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 C 0.06 0.82 5.61 86.31 0.48 1.31 16 23 C 0.04 0.58 4.72 86.31 0.41 0.99 16 24 N -0.56 -12.28 10.44 -200.01 -2.09 -14.37 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.79 8.01 -2.39 -0.02 1.77 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.87 6.34 -2.39 -0.02 1.86 16 32 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.09 1.72 8.03 -2.38 -0.02 1.70 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.87 6.49 -2.38 -0.02 1.86 16 36 H 0.06 2.28 8.14 -2.40 -0.02 2.26 16 37 H 0.06 2.39 8.14 -2.40 -0.02 2.37 16 38 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 1.16 8.07 -2.39 -0.02 1.14 16 41 H 0.11 1.10 7.74 -2.39 -0.02 1.08 16 42 H 0.08 0.99 8.02 -2.39 -0.02 0.97 16 Total: -1.00 -70.11 367.03 -2.56 -72.67 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.01 Total: 10.05 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 6.99 Total: -13.09 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -10.12 Total: -105.95 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -2.46 Total: -9.16 kcal Total: -70.11 -2.56 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177841230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.408 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds