Wall clock time and date at job start Tue Mar 31 2020 16:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21586 * 119.99236 * 0.02562 * 13 12 2 15 15 C 1.47522 * 120.00314 * 179.97438 * 13 12 2 16 16 C 1.36605 * 126.82458 * 179.71063 * 15 13 12 17 17 C 1.42226 * 103.79250 * 179.87928 * 16 15 13 18 18 C 1.48382 * 126.84795 * 180.14086 * 17 16 15 19 19 C 1.39400 * 120.23863 * 5.27375 * 18 17 16 20 20 C 1.37662 * 120.22722 * 180.14151 * 19 18 17 21 21 C 1.39436 * 120.39428 * 359.97438 * 20 19 18 22 22 C 1.39032 * 119.07033 * 359.72947 * 21 20 19 23 23 C 1.37494 * 120.90624 * 0.13413 * 22 21 20 24 24 C 1.51669 * 107.02962 * 180.56235 * 22 21 20 25 25 C 1.54707 * 101.91703 * 15.38789 * 24 22 21 26 26 O 1.36121 * 129.74533 * 179.06530 * 21 20 19 27 27 N 1.30963 * 106.30504 * 0.38992 * 17 16 15 28 28 O 1.20864 * 111.79491 * 359.74668 * 27 17 16 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 34 34 H 1.07998 * 128.10352 * 359.97438 * 16 15 13 35 35 H 1.08004 * 119.88777 * 0.11808 * 19 18 17 36 36 H 1.07998 * 119.79914 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.06643 * 180.02562 * 23 22 21 38 38 H 1.09000 * 110.93825 * 133.53893 * 24 22 21 39 39 H 1.08992 * 110.94610 * 257.19506 * 24 22 21 40 40 H 1.08997 * 110.74708 * 92.99285 * 25 24 22 41 41 H 1.08997 * 110.74553 * 216.15226 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8583 1.1614 -2.4116 15 6 2.6393 -0.7137 -3.5615 16 6 2.8173 -0.1735 -4.8036 17 6 3.3053 -1.2610 -5.5795 18 6 3.6726 -1.2343 -7.0169 19 6 3.6585 -0.0324 -7.7229 20 6 3.9965 -0.0084 -9.0572 21 6 4.3564 -1.1839 -9.7150 22 6 4.3743 -2.3780 -9.0032 23 6 4.0408 -2.4104 -7.6697 24 6 4.8115 -3.4637 -9.9679 25 6 5.3962 -2.6359 -11.1367 26 8 4.7041 -1.3816 -11.0161 27 7 3.3607 -2.2919 -4.7738 28 8 2.9970 -2.0084 -3.6566 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.9026 -0.5284 4.4375 33 1 2.2490 -1.6318 -1.1526 34 1 2.6324 0.8419 -5.1214 35 1 3.3810 0.8831 -7.2215 36 1 3.9836 0.9267 -9.5973 37 1 4.0598 -3.3455 -7.1298 38 1 5.5758 -4.0984 -9.5195 39 1 3.9594 -4.0575 -10.2984 40 1 6.4702 -2.4977 -11.0127 41 1 5.1774 -3.1104 -12.0933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178281440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:16 Heat of formation + Delta-G solvation = 26.735169 kcal Electronic energy + Delta-G solvation = -26080.855910 eV Core-core repulsion = 22122.921846 eV Total energy + Delta-G solvation = -3957.934064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.96247 -41.46701 -39.18929 -38.11138 -35.30755 -34.24670 -33.14900 -32.64053 -31.99359 -30.21403 -29.73420 -29.62011 -25.31229 -24.76306 -24.06864 -23.57310 -22.57746 -21.72209 -20.79312 -19.76164 -18.67861 -17.84503 -17.74188 -17.03608 -16.61435 -16.57154 -16.07098 -15.68949 -15.24495 -14.56442 -14.52320 -14.29039 -14.00799 -13.78723 -13.59882 -13.47709 -13.28411 -13.10062 -13.00484 -12.44233 -12.26865 -12.20431 -11.96763 -11.76610 -11.73861 -11.41034 -11.16328 -10.87988 -10.46379 -10.25666 -10.00163 -9.74411 -9.56134 -9.32109 -9.31658 -8.83748 -8.38110 -8.31421 -6.25150 -4.28974 0.49808 0.91469 0.96785 2.15589 2.74637 2.81707 3.20142 3.32348 3.33030 3.35378 3.41514 3.56046 3.77590 3.93755 4.09833 4.27073 4.43311 4.49937 4.55860 4.79283 4.84832 4.94583 5.00112 5.08767 5.09572 5.21963 5.26320 5.27740 5.31874 5.61553 5.70129 5.87531 5.96706 6.08346 6.12828 6.22263 6.27071 6.45201 6.71938 6.73080 6.99410 7.10619 7.38431 7.84194 8.08246 8.36848 8.51238 8.74745 9.33661 10.86754 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.002059 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.441705 B =13594.199631 C =14082.982454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.679 5.679 13 C 0.589 3.411 14 O -0.526 6.526 15 C -0.059 4.059 16 C -0.157 4.157 17 C 0.055 3.945 18 C -0.046 4.046 19 C -0.056 4.056 20 C -0.136 4.136 21 C 0.115 3.885 22 C -0.177 4.177 23 C -0.040 4.040 24 C -0.110 4.110 25 C 0.051 3.949 26 O -0.303 6.303 27 N -0.344 5.344 28 O 0.124 5.876 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.404 0.596 34 H 0.184 0.816 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -3.193 -27.544 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.326 5.326 13 C 0.371 3.629 14 O -0.404 6.404 15 C -0.125 4.125 16 C -0.179 4.179 17 C -0.101 4.101 18 C -0.047 4.047 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.069 3.931 22 C -0.178 4.178 23 C -0.059 4.059 24 C -0.147 4.147 25 C -0.024 4.024 26 O -0.217 6.217 27 N -0.044 5.044 28 O 0.049 5.951 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.238 0.762 34 H 0.201 0.799 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.733 -3.511 -27.662 28.283 hybrid contribution -0.595 0.822 0.242 1.043 sum 4.138 -2.689 -27.420 27.861 Atomic orbital electron populations 1.22475 0.98790 1.01273 0.99620 1.19272 0.90492 0.94790 0.82185 0.92830 1.20994 1.33647 1.14674 0.88306 0.89891 1.24824 0.95455 0.96725 0.95470 1.69864 1.44602 1.39973 0.98083 0.86883 0.80569 0.83516 0.77588 1.20199 1.22048 1.18600 1.46223 1.62896 1.14348 1.09144 1.16646 0.79196 0.85923 0.81177 1.90834 1.51651 1.14170 1.83715 1.24591 1.04792 0.84786 0.98348 1.22798 1.02677 1.01539 0.90893 1.21772 1.03225 0.89912 0.95167 1.17432 1.04741 0.94046 0.88452 1.20882 0.96501 0.97379 0.92811 1.20154 1.05367 0.96117 0.93780 1.19726 0.95430 0.94283 0.83673 1.20649 1.07350 0.94741 0.95011 1.20308 0.95380 0.98114 0.92134 1.21809 1.02019 0.97052 0.93826 1.23860 0.96840 0.81630 1.00044 1.86831 1.71644 1.40516 1.22708 1.73987 1.16042 1.23196 0.91157 1.84963 1.59810 1.25536 1.24742 0.94335 0.93104 0.92468 0.92171 0.76162 0.79907 0.84163 0.84625 0.84928 0.88778 0.88915 0.90318 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.96 37.16 0.33 -3.16 16 2 C 0.24 5.39 2.15 -69.08 -0.15 5.24 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16 4 C -0.54 -14.13 9.31 -34.44 -0.32 -14.45 16 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 8 Si 0.88 21.06 24.37 -169.99 -4.14 16.92 16 9 H -0.28 -6.34 6.87 56.52 0.39 -5.95 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 12 N -0.68 -13.13 5.07 -55.98 -0.28 -13.41 16 13 C 0.59 10.85 7.78 -12.47 -0.10 10.75 16 14 O -0.53 -11.06 16.57 5.29 0.09 -10.97 16 15 C -0.06 -0.91 7.28 -36.39 -0.26 -1.18 16 16 C -0.16 -2.08 10.31 -38.64 -0.40 -2.48 16 17 C 0.05 0.72 7.05 -82.53 -0.58 0.14 16 18 C -0.05 -0.52 5.88 -104.83 -0.62 -1.13 16 19 C -0.06 -0.53 9.57 -39.36 -0.38 -0.91 16 20 C -0.14 -1.22 10.05 -39.35 -0.40 -1.62 16 21 C 0.11 1.12 7.04 -38.84 -0.27 0.85 16 22 C -0.18 -1.66 6.26 -104.12 -0.65 -2.31 16 23 C -0.04 -0.42 9.69 -39.40 -0.38 -0.81 16 24 C -0.11 -0.68 7.12 -26.51 -0.19 -0.87 16 25 C 0.05 0.29 8.01 38.06 0.30 0.59 16 26 O -0.30 -2.79 11.10 -20.13 -0.22 -3.02 16 27 N -0.34 -5.00 11.80 33.39 0.39 -4.61 16 28 O 0.12 1.85 11.02 15.52 0.17 2.02 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.40 7.02 8.36 -40.82 -0.34 6.67 16 34 H 0.18 2.02 7.60 -52.49 -0.40 1.62 16 35 H 0.14 1.04 7.25 -52.48 -0.38 0.66 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.36 7.91 -52.49 -0.42 0.95 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -31.40 350.52 -6.71 -38.11 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.61 Total: 3.96 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -4.15 Total: -9.25 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.88 Total: -43.04 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.04 Total: -11.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.14 Total: 16.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.40 -6.71 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178281440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.842 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds