Wall clock time and date at job start Tue Mar 31 2020 16:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21586 * 119.99236 * 0.02562 * 13 12 2 15 15 C 1.47522 * 120.00314 * 179.97438 * 13 12 2 16 16 C 1.36605 * 126.82458 * 179.71063 * 15 13 12 17 17 C 1.42226 * 103.79250 * 179.87928 * 16 15 13 18 18 C 1.48382 * 126.84795 * 180.14086 * 17 16 15 19 19 C 1.39400 * 120.23863 * 5.27375 * 18 17 16 20 20 C 1.37662 * 120.22722 * 180.14151 * 19 18 17 21 21 C 1.39436 * 120.39428 * 359.97438 * 20 19 18 22 22 C 1.39032 * 119.07033 * 359.72947 * 21 20 19 23 23 C 1.37494 * 120.90624 * 0.13413 * 22 21 20 24 24 C 1.51669 * 107.02962 * 180.56235 * 22 21 20 25 25 C 1.54707 * 101.91703 * 15.38789 * 24 22 21 26 26 O 1.36121 * 129.74533 * 179.06530 * 21 20 19 27 27 N 1.30963 * 106.30504 * 0.38992 * 17 16 15 28 28 O 1.20864 * 111.79491 * 359.74668 * 27 17 16 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 34 34 H 1.07998 * 128.10352 * 359.97438 * 16 15 13 35 35 H 1.08004 * 119.88777 * 0.11808 * 19 18 17 36 36 H 1.07998 * 119.79914 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.06643 * 180.02562 * 23 22 21 38 38 H 1.09000 * 110.93825 * 133.53893 * 24 22 21 39 39 H 1.08992 * 110.94610 * 257.19506 * 24 22 21 40 40 H 1.08997 * 110.74708 * 92.99285 * 25 24 22 41 41 H 1.08997 * 110.74553 * 216.15226 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8583 1.1614 -2.4116 15 6 2.6393 -0.7137 -3.5615 16 6 2.8173 -0.1735 -4.8036 17 6 3.3053 -1.2610 -5.5795 18 6 3.6726 -1.2343 -7.0169 19 6 3.6585 -0.0324 -7.7229 20 6 3.9965 -0.0084 -9.0572 21 6 4.3564 -1.1839 -9.7150 22 6 4.3743 -2.3780 -9.0032 23 6 4.0408 -2.4104 -7.6697 24 6 4.8115 -3.4637 -9.9679 25 6 5.3962 -2.6359 -11.1367 26 8 4.7041 -1.3816 -11.0161 27 7 3.3607 -2.2919 -4.7738 28 8 2.9970 -2.0084 -3.6566 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.9026 -0.5284 4.4375 33 1 2.2490 -1.6318 -1.1526 34 1 2.6324 0.8419 -5.1214 35 1 3.3810 0.8831 -7.2215 36 1 3.9836 0.9267 -9.5973 37 1 4.0598 -3.3455 -7.1298 38 1 5.5758 -4.0984 -9.5195 39 1 3.9594 -4.0575 -10.2984 40 1 6.4702 -2.4977 -11.0127 41 1 5.1774 -3.1104 -12.0933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178281440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:13 Heat of formation + Delta-G solvation = 6.143675 kcal Electronic energy + Delta-G solvation = -26081.748824 eV Core-core repulsion = 22122.921846 eV Total energy + Delta-G solvation = -3958.826978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -46.07155 -42.09688 -40.74306 -38.83528 -37.02523 -35.28326 -34.48213 -33.76117 -33.33981 -31.61760 -30.79286 -30.24628 -27.23717 -25.85107 -25.11683 -24.44898 -23.40926 -22.50826 -22.33460 -21.16023 -19.98356 -18.87802 -18.52600 -18.44226 -17.69798 -17.41362 -17.29614 -17.04181 -16.58812 -15.97588 -15.83749 -15.21124 -15.04171 -14.88296 -14.81237 -14.60695 -14.22805 -14.10998 -14.10094 -13.73992 -13.71956 -13.27794 -13.22939 -12.84594 -12.72280 -12.68235 -12.40536 -12.13426 -11.87202 -11.67619 -11.31204 -11.28960 -11.27688 -10.92903 -10.86377 -10.05940 -10.01386 -9.07151 -8.36114 -6.43550 -0.43510 -0.14458 0.22029 1.20866 1.31836 1.39662 1.48456 1.50555 1.92009 2.20443 2.27106 2.28917 2.65396 2.77869 2.99791 3.17529 3.49523 3.64691 3.81295 3.82054 3.94302 4.12408 4.14183 4.19839 4.25464 4.44899 4.51175 4.56036 4.61618 4.67722 4.71946 4.78643 4.84884 4.97370 4.99492 5.11049 5.25243 5.26338 5.34505 5.37256 5.43139 5.49799 6.06641 6.07303 6.51148 6.61631 6.91478 7.01176 7.24593 8.78993 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.002059 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.441705 B =13594.199631 C =14082.982454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.241 3.759 3 H 0.037 0.963 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.028 3.972 7 N -0.933 5.933 8 Si 0.940 3.060 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.255 1.255 12 N -0.682 5.682 13 C 0.598 3.402 14 O -0.552 6.552 15 C -0.077 4.077 16 C -0.137 4.137 17 C 0.064 3.936 18 C -0.070 4.070 19 C -0.052 4.052 20 C -0.140 4.140 21 C 0.107 3.893 22 C -0.185 4.185 23 C -0.050 4.050 24 C -0.109 4.109 25 C 0.047 3.953 26 O -0.318 6.318 27 N -0.357 5.357 28 O 0.114 5.886 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.271 0.729 33 H 0.412 0.588 34 H 0.208 0.792 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -2.457 -30.289 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 H 0.055 0.945 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.572 5.572 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.179 1.179 12 N -0.330 5.330 13 C 0.381 3.619 14 O -0.431 6.431 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.091 4.091 18 C -0.071 4.071 19 C -0.071 4.071 20 C -0.158 4.158 21 C 0.061 3.939 22 C -0.186 4.186 23 C -0.069 4.069 24 C -0.146 4.146 25 C -0.027 4.027 26 O -0.232 6.232 27 N -0.058 5.058 28 O 0.041 5.959 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.225 0.775 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.381 -2.799 -30.427 30.868 hybrid contribution -0.358 0.503 0.891 1.084 sum 4.023 -2.297 -29.536 29.897 Atomic orbital electron populations 1.22379 0.97148 1.02079 1.00059 1.18963 0.91680 0.93563 0.82134 0.94523 1.21211 1.32678 1.13762 0.89856 0.92572 1.25595 0.96855 0.99550 0.95215 1.69984 1.46528 1.41933 0.98712 0.85981 0.79668 0.80132 0.77511 1.18453 1.22133 1.17906 1.46036 1.63442 1.14713 1.08785 1.16748 0.78192 0.85543 0.81383 1.90811 1.52712 1.15270 1.84352 1.24044 1.06917 0.85451 0.97793 1.23144 1.00531 1.02462 0.89770 1.22073 1.01942 0.89246 0.95888 1.17551 1.06700 0.95257 0.87636 1.21107 0.95635 0.97406 0.92961 1.20437 1.04717 0.96895 0.93755 1.20016 0.95077 0.94713 0.84080 1.20957 1.06764 0.96051 0.94820 1.20357 0.95883 0.97876 0.92813 1.21924 1.02804 0.96604 0.93281 1.24161 0.97220 0.80271 1.01066 1.86814 1.71922 1.42165 1.22290 1.73979 1.16729 1.23885 0.91242 1.84960 1.60477 1.25287 1.25142 0.92813 0.93610 0.91555 0.92011 0.75236 0.77496 0.82143 0.82634 0.85357 0.87405 0.88005 0.89199 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.54 8.96 71.98 0.65 -5.89 16 2 C 0.24 10.96 2.15 44.25 0.10 11.05 16 3 H 0.04 1.81 6.63 -2.39 -0.02 1.80 16 4 C -0.54 -28.65 9.31 25.60 0.24 -28.41 16 5 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 6 C 0.03 1.54 5.45 84.66 0.46 2.00 16 7 N -0.93 -55.24 13.96 21.45 0.30 -54.94 16 8 Si 0.94 43.13 24.37 68.60 1.67 44.80 16 9 H -0.26 -11.14 6.87 99.48 0.68 -10.45 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 12 N -0.68 -26.36 5.07 -449.28 -2.28 -28.64 16 13 C 0.60 21.69 7.78 86.69 0.67 22.37 16 14 O -0.55 -22.71 16.57 -3.99 -0.07 -22.78 16 15 C -0.08 -2.30 7.28 24.34 0.18 -2.12 16 16 C -0.14 -3.42 10.31 22.88 0.24 -3.18 16 17 C 0.06 1.61 7.05 42.97 0.30 1.91 16 18 C -0.07 -1.49 5.88 -20.00 -0.12 -1.61 16 19 C -0.05 -0.86 9.57 22.41 0.21 -0.65 16 20 C -0.14 -2.21 10.05 22.42 0.23 -1.99 16 21 C 0.11 1.90 7.04 22.75 0.16 2.06 16 22 C -0.19 -3.19 6.26 -19.54 -0.12 -3.31 16 23 C -0.05 -1.01 9.69 22.39 0.22 -0.80 16 24 C -0.11 -1.11 7.12 30.74 0.22 -0.90 16 25 C 0.05 0.40 8.01 72.56 0.58 0.98 16 26 O -0.32 -5.17 11.10 -94.93 -1.05 -6.22 16 27 N -0.36 -10.22 11.80 -48.92 -0.58 -10.79 16 28 O 0.11 3.39 11.02 65.73 0.72 4.11 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.92 3.27 -2.39 -0.01 1.92 16 31 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 33 H 0.41 14.51 8.36 -92.71 -0.78 13.74 16 34 H 0.21 4.00 7.60 -2.91 -0.02 3.98 16 35 H 0.16 1.90 7.25 -2.91 -0.02 1.88 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.13 2.61 7.91 -2.91 -0.02 2.58 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -67.73 350.52 3.17 -64.56 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.24 Total: 18.38 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.21 Total: -8.48 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.55 Total: -94.37 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.40 Total: -24.89 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.67 Total: 44.80 kcal Total: -67.73 3.17 -64.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178281440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.700 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds