Wall clock time and date at job start Tue Mar 31 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30173 * 126.81143 * 2 1 4 4 O 1.20892 * 111.75159 * 179.97438 * 3 2 1 5 5 C 1.34267 * 111.64305 * 359.75125 * 4 3 2 6 6 C 1.50704 * 126.82869 * 180.30669 * 5 4 3 7 7 C 1.53001 * 117.49203 * 8.86182 * 6 5 4 8 8 C 1.52998 * 117.49901 * 300.20230 * 6 5 4 9 9 C 1.35910 * 106.35066 * 0.39850 * 5 4 3 10 10 N 1.40634 * 128.06124 * 179.88558 * 9 5 4 11 11 C 1.34773 * 119.99841 * 152.66364 * 10 9 5 12 12 O 1.21616 * 120.00331 * 355.12398 * 11 10 9 13 13 C 1.47523 * 120.00325 * 175.12197 * 11 10 9 14 14 C 1.39673 * 120.19649 * 0.02562 * 13 11 10 15 15 C 1.37826 * 119.92152 * 180.02562 * 14 13 11 16 16 C 1.38575 * 120.31895 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40604 * 0.02667 * 16 15 14 18 18 C 1.38830 * 120.07073 * 359.97438 * 17 16 15 19 19 O 1.35525 * 120.15610 * 179.97438 * 18 17 16 20 20 C 1.34813 * 117.00660 * 354.35023 * 19 18 17 21 21 H 1.07997 * 119.99423 * 5.09987 * 20 19 18 22 22 C 1.38695 * 120.00332 * 185.10535 * 20 19 18 23 23 N 1.31519 * 119.99997 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99739 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47471 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46865 * 120.00287 * 24 22 20 27 27 H 1.48505 * 109.46989 * 239.99429 * 24 22 20 28 28 H 1.09000 * 109.47446 * 277.18449 * 1 2 3 29 29 H 1.09007 * 109.46751 * 37.18475 * 1 2 3 30 30 H 1.08993 * 109.47397 * 157.17800 * 1 2 3 31 31 H 1.08997 * 115.55238 * 154.52544 * 6 5 4 32 32 H 1.08994 * 117.50405 * 359.97438 * 7 6 5 33 33 H 1.09002 * 117.49956 * 145.02613 * 7 6 5 34 34 H 1.08997 * 117.49922 * 214.97987 * 8 6 5 35 35 H 1.09002 * 117.49828 * 359.97146 * 8 6 5 36 36 H 0.97005 * 120.00746 * 332.66972 * 10 9 5 37 37 H 1.07999 * 120.03664 * 359.97438 * 14 13 11 38 38 H 1.07995 * 119.83781 * 179.97438 * 15 14 13 39 39 H 1.08000 * 119.79309 * 180.02562 * 16 15 14 40 40 H 1.08004 * 119.96073 * 179.72791 * 17 16 15 41 41 H 0.97000 * 119.99880 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4544 0.7281 0.0005 5 6 3.6083 -0.6057 0.0063 6 6 4.9102 -1.3648 0.0152 7 6 6.1948 -0.5613 0.2270 8 6 5.8697 -1.1354 -1.1543 9 6 2.3566 -1.1354 0.0006 10 7 1.9897 -2.4930 0.0011 11 6 0.8100 -2.8719 0.5315 12 8 0.1030 -2.0541 1.0885 13 6 0.3764 -4.2788 0.4363 14 6 1.1853 -5.2216 -0.2021 15 6 0.7744 -6.5344 -0.2882 16 6 -0.4386 -6.9248 0.2564 17 6 -1.2485 -6.0042 0.8902 18 6 -0.8508 -4.6776 0.9863 19 8 -1.6449 -3.7721 1.6078 20 6 -2.8601 -4.1966 2.0084 21 1 -3.1301 -5.2370 1.9039 22 6 -3.7636 -3.2972 2.5547 23 7 -3.4346 -2.0302 2.6823 24 14 -5.4477 -3.8854 3.1091 25 1 -5.5698 -5.3439 2.8586 26 1 -5.6130 -3.6161 4.5601 27 1 -6.4992 -3.1632 2.3487 28 1 -0.3634 0.1285 1.0196 29 1 -0.3633 0.8188 -0.6212 30 1 -0.3634 -0.9471 -0.3986 31 1 4.8672 -2.3669 0.4418 32 1 6.0985 0.5163 0.3595 33 1 6.9973 -1.0350 0.7925 34 1 6.4581 -1.9865 -1.4968 35 1 5.5591 -0.4357 -1.9303 36 1 2.5855 -3.1567 -0.3802 37 1 2.1313 -4.9221 -0.6284 38 1 1.4007 -7.2622 -0.7824 39 1 -0.7521 -7.9558 0.1844 40 1 -2.1944 -6.3155 1.3082 41 1 -4.0664 -1.4012 3.0647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183937490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:58 Heat of formation + Delta-G solvation = 67.830646 kcal Electronic energy + Delta-G solvation = -27684.195158 eV Core-core repulsion = 23728.043128 eV Total energy + Delta-G solvation = -3956.152030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.66855 -39.88126 -38.45136 -37.49158 -36.48758 -35.00246 -33.37711 -32.43883 -31.12208 -29.87030 -29.04124 -28.08641 -25.51836 -24.08265 -23.69449 -22.64849 -22.20355 -21.34442 -20.30397 -19.43147 -18.19553 -17.73458 -17.48564 -17.27914 -16.41783 -16.04946 -15.49043 -14.78644 -14.70100 -14.52630 -14.38166 -14.00053 -13.77835 -13.53480 -13.06299 -12.86165 -12.67917 -12.56192 -12.13244 -12.00686 -11.80372 -11.79212 -11.51812 -11.29915 -11.25976 -11.18384 -10.99594 -10.89241 -10.69494 -10.50812 -10.26261 -9.65553 -9.22980 -8.98560 -8.96734 -8.40106 -8.01865 -7.42271 -6.54273 -4.13655 1.40750 1.66650 2.20917 2.47151 2.92283 3.06687 3.07636 3.13477 3.48418 3.61592 3.69921 3.85948 4.27141 4.50022 4.56249 4.67247 4.72783 4.86542 4.95204 5.06272 5.24476 5.36293 5.39045 5.40212 5.47776 5.63258 5.70398 5.78993 5.87040 5.93639 5.99603 6.00602 6.21540 6.39896 6.44443 6.55061 6.77341 6.80914 6.92861 6.95132 7.12326 7.19590 7.57445 7.73178 7.86370 8.52900 8.78812 8.86647 9.55166 10.59154 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.003841 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.620750 B = 7287.514551 C = 9014.604596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.040 3.960 3 N -0.364 5.364 4 O 0.099 5.901 5 C -0.059 4.059 6 C -0.074 4.074 7 C -0.165 4.165 8 C -0.166 4.166 9 C 0.069 3.931 10 N -0.651 5.651 11 C 0.547 3.453 12 O -0.469 6.469 13 C -0.228 4.228 14 C -0.038 4.038 15 C -0.229 4.229 16 C -0.048 4.048 17 C -0.235 4.235 18 C 0.191 3.809 19 O -0.122 6.122 20 C -0.403 4.403 21 H 0.095 0.905 22 C 0.046 3.954 23 N -0.829 5.829 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.407 0.593 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.209 -3.329 -6.884 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 N -0.071 5.071 4 O 0.036 5.964 5 C -0.125 4.125 6 C -0.094 4.094 7 C -0.202 4.202 8 C -0.204 4.204 9 C -0.031 4.031 10 N -0.301 5.301 11 C 0.338 3.662 12 O -0.341 6.341 13 C -0.233 4.233 14 C -0.056 4.056 15 C -0.248 4.248 16 C -0.067 4.067 17 C -0.254 4.254 18 C 0.131 3.869 19 O -0.020 6.020 20 C -0.479 4.479 21 H 0.113 0.887 22 C -0.162 4.162 23 N -0.460 5.460 24 Si 0.765 3.235 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.244 0.756 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.283 -0.937 -6.287 14.725 hybrid contribution -0.602 -1.660 0.122 1.770 sum 12.681 -2.598 -6.165 14.337 Atomic orbital electron populations 1.20357 0.84259 1.02637 1.04247 1.23558 0.99576 0.86940 1.01929 1.73780 0.89057 1.23455 1.20768 1.84762 1.21498 1.20976 1.69188 1.22557 0.94916 0.84131 1.10946 1.20229 0.84663 0.98812 1.05650 1.23036 0.97045 1.00718 0.99432 1.23128 1.01525 1.03805 0.91892 1.18077 0.91220 0.86904 1.06899 1.42862 1.21783 1.03417 1.62077 1.18413 0.79754 0.88891 0.79101 1.91027 1.52284 1.51907 1.38905 1.18598 0.98130 0.92332 1.14281 1.20753 0.96783 0.92954 0.95154 1.20465 0.99013 0.95779 1.09508 1.20929 0.93396 0.98218 0.94150 1.21172 1.02960 0.92980 1.08296 1.19204 0.89839 0.88983 0.88921 1.84144 1.24651 1.33962 1.59228 1.21552 0.88522 0.95923 1.41880 0.88736 1.25380 0.99555 0.94840 0.96427 1.70112 1.35549 1.02089 1.38245 0.85660 0.80140 0.79038 0.78676 1.18941 1.19968 1.19942 0.88834 0.92733 0.89206 0.85043 0.87846 0.87816 0.87750 0.88241 0.75617 0.87094 0.87111 0.87043 0.84935 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.17 8.40 36.00 0.30 -0.87 16 2 C 0.04 0.77 7.05 -81.93 -0.58 0.20 16 3 N -0.36 -6.67 12.06 33.56 0.40 -6.27 16 4 O 0.10 1.58 11.00 16.58 0.18 1.77 16 5 C -0.06 -0.84 6.97 -35.14 -0.24 -1.09 16 6 C -0.07 -0.74 6.27 -91.77 -0.58 -1.32 16 7 C -0.17 -1.34 10.19 -26.69 -0.27 -1.61 16 8 C -0.17 -1.28 10.24 -26.69 -0.27 -1.55 16 9 C 0.07 1.17 6.85 -83.29 -0.57 0.60 16 10 N -0.65 -10.53 5.41 -10.58 -0.06 -10.59 16 11 C 0.55 11.29 7.15 -12.48 -0.09 11.20 16 12 O -0.47 -11.70 10.22 -16.59 -0.17 -11.87 16 13 C -0.23 -4.61 5.89 -104.81 -0.62 -5.23 16 14 C -0.04 -0.59 9.53 -39.20 -0.37 -0.97 16 15 C -0.23 -3.45 10.03 -39.61 -0.40 -3.85 16 16 C -0.05 -0.79 10.03 -39.54 -0.40 -1.19 16 17 C -0.23 -4.75 9.16 -39.44 -0.36 -5.11 16 18 C 0.19 4.44 6.66 -38.60 -0.26 4.18 16 19 O -0.12 -3.39 7.84 -21.07 -0.17 -3.56 16 20 C -0.40 -10.88 9.49 30.90 0.29 -10.58 16 21 H 0.10 2.32 5.21 -52.49 -0.27 2.05 16 22 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 23 N -0.83 -23.90 13.67 55.48 0.76 -23.15 16 24 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H 0.09 2.11 7.57 -51.93 -0.39 1.72 16 29 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 30 H 0.09 1.96 5.93 -51.93 -0.31 1.65 16 31 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 0.90 8.02 -51.93 -0.42 0.48 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 5.01 6.87 -40.82 -0.28 4.73 16 37 H 0.11 1.30 6.41 -52.49 -0.34 0.96 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -32.58 351.24 -7.68 -40.26 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.40 Total: 9.34 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -4.51 Total: -16.05 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 1.11 Total: -40.00 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.15 Total: -13.66 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.58 -7.68 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.086 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds