Wall clock time and date at job start Tue Mar 31 2020 14:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30173 * 126.81143 * 2 1 4 4 O 1.20892 * 111.75159 * 179.97438 * 3 2 1 5 5 C 1.34267 * 111.64305 * 359.75125 * 4 3 2 6 6 C 1.50704 * 126.82869 * 180.30669 * 5 4 3 7 7 C 1.53001 * 117.49203 * 8.86182 * 6 5 4 8 8 C 1.52998 * 117.49901 * 300.20230 * 6 5 4 9 9 C 1.35910 * 106.35066 * 0.39850 * 5 4 3 10 10 N 1.40634 * 128.06124 * 179.88558 * 9 5 4 11 11 C 1.34773 * 119.99841 * 152.66364 * 10 9 5 12 12 O 1.21616 * 120.00331 * 355.12398 * 11 10 9 13 13 C 1.47523 * 120.00325 * 175.12197 * 11 10 9 14 14 C 1.39673 * 120.19649 * 0.02562 * 13 11 10 15 15 C 1.37826 * 119.92152 * 180.02562 * 14 13 11 16 16 C 1.38575 * 120.31895 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40604 * 0.02667 * 16 15 14 18 18 C 1.38830 * 120.07073 * 359.97438 * 17 16 15 19 19 O 1.35525 * 120.15610 * 179.97438 * 18 17 16 20 20 C 1.34813 * 117.00660 * 354.35023 * 19 18 17 21 21 H 1.07997 * 119.99423 * 5.09987 * 20 19 18 22 22 C 1.38695 * 120.00332 * 185.10535 * 20 19 18 23 23 N 1.31519 * 119.99997 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99739 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47471 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46865 * 120.00287 * 24 22 20 27 27 H 1.48505 * 109.46989 * 239.99429 * 24 22 20 28 28 H 1.09000 * 109.47446 * 277.18449 * 1 2 3 29 29 H 1.09007 * 109.46751 * 37.18475 * 1 2 3 30 30 H 1.08993 * 109.47397 * 157.17800 * 1 2 3 31 31 H 1.08997 * 115.55238 * 154.52544 * 6 5 4 32 32 H 1.08994 * 117.50405 * 359.97438 * 7 6 5 33 33 H 1.09002 * 117.49956 * 145.02613 * 7 6 5 34 34 H 1.08997 * 117.49922 * 214.97987 * 8 6 5 35 35 H 1.09002 * 117.49828 * 359.97146 * 8 6 5 36 36 H 0.97005 * 120.00746 * 332.66972 * 10 9 5 37 37 H 1.07999 * 120.03664 * 359.97438 * 14 13 11 38 38 H 1.07995 * 119.83781 * 179.97438 * 15 14 13 39 39 H 1.08000 * 119.79309 * 180.02562 * 16 15 14 40 40 H 1.08004 * 119.96073 * 179.72791 * 17 16 15 41 41 H 0.97000 * 119.99880 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4544 0.7281 0.0005 5 6 3.6083 -0.6057 0.0063 6 6 4.9102 -1.3648 0.0152 7 6 6.1948 -0.5613 0.2270 8 6 5.8697 -1.1354 -1.1543 9 6 2.3566 -1.1354 0.0006 10 7 1.9897 -2.4930 0.0011 11 6 0.8100 -2.8719 0.5315 12 8 0.1030 -2.0541 1.0885 13 6 0.3764 -4.2788 0.4363 14 6 1.1853 -5.2216 -0.2021 15 6 0.7744 -6.5344 -0.2882 16 6 -0.4386 -6.9248 0.2564 17 6 -1.2485 -6.0042 0.8902 18 6 -0.8508 -4.6776 0.9863 19 8 -1.6449 -3.7721 1.6078 20 6 -2.8601 -4.1966 2.0084 21 1 -3.1301 -5.2370 1.9039 22 6 -3.7636 -3.2972 2.5547 23 7 -3.4346 -2.0302 2.6823 24 14 -5.4477 -3.8854 3.1091 25 1 -5.5698 -5.3439 2.8586 26 1 -5.6130 -3.6161 4.5601 27 1 -6.4992 -3.1632 2.3487 28 1 -0.3634 0.1285 1.0196 29 1 -0.3633 0.8188 -0.6212 30 1 -0.3634 -0.9471 -0.3986 31 1 4.8672 -2.3669 0.4418 32 1 6.0985 0.5163 0.3595 33 1 6.9973 -1.0350 0.7925 34 1 6.4581 -1.9865 -1.4968 35 1 5.5591 -0.4357 -1.9303 36 1 2.5855 -3.1567 -0.3802 37 1 2.1313 -4.9221 -0.6284 38 1 1.4007 -7.2622 -0.7824 39 1 -0.7521 -7.9558 0.1844 40 1 -2.1944 -6.3155 1.3082 41 1 -4.0664 -1.4012 3.0647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:55 Heat of formation + Delta-G solvation = 47.162736 kcal Electronic energy + Delta-G solvation = -27685.091385 eV Core-core repulsion = 23728.043128 eV Total energy + Delta-G solvation = -3957.048258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -46.06718 -41.45582 -40.06544 -38.26748 -38.06853 -36.49177 -34.84567 -34.32286 -32.53156 -31.23951 -30.57794 -29.65912 -27.40083 -25.52296 -24.75382 -23.73314 -23.20908 -22.84537 -21.71055 -20.76251 -19.87761 -19.27041 -18.82588 -18.69080 -17.94702 -17.25675 -16.66555 -16.38624 -16.19625 -16.02652 -15.92380 -15.36502 -15.31295 -14.94831 -14.46014 -14.32940 -14.26103 -14.12771 -13.63782 -13.55247 -13.19803 -13.03074 -12.68500 -12.63425 -12.56344 -12.38562 -12.34338 -12.25798 -12.10859 -11.66467 -11.40034 -11.31554 -10.84164 -10.64597 -10.56676 -9.86479 -9.34353 -9.02979 -8.45029 -6.14935 0.00170 0.34631 0.72904 1.00672 1.32717 1.42252 1.51379 1.65242 2.07163 2.14598 2.28954 2.87158 2.94589 3.16745 3.21139 3.30256 3.44284 3.55764 3.86419 4.00670 4.06469 4.08897 4.17068 4.28745 4.47180 4.51717 4.55322 4.57372 4.65203 4.70562 4.85547 4.95737 5.02877 5.07546 5.12456 5.15871 5.21468 5.30882 5.40054 5.47196 5.59883 5.70511 5.95024 6.15947 6.44792 6.95054 7.18890 7.29491 7.78424 8.74592 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.003841 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.620750 B = 7287.514551 C = 9014.604596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C 0.011 3.989 3 N -0.380 5.380 4 O 0.110 5.890 5 C -0.022 4.022 6 C -0.100 4.100 7 C -0.159 4.159 8 C -0.145 4.145 9 C 0.036 3.964 10 N -0.625 5.625 11 C 0.542 3.458 12 O -0.523 6.523 13 C -0.241 4.241 14 C -0.029 4.029 15 C -0.198 4.198 16 C -0.038 4.038 17 C -0.257 4.257 18 C 0.154 3.846 19 O -0.185 6.185 20 C -0.424 4.424 21 H 0.107 0.893 22 C -0.018 4.018 23 N -0.900 5.900 24 Si 1.017 2.983 25 H -0.246 1.246 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.428 0.572 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.123 0.877 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.382 -7.067 -9.078 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.148 4.148 3 N -0.086 5.086 4 O 0.045 5.955 5 C -0.089 4.089 6 C -0.119 4.119 7 C -0.196 4.196 8 C -0.182 4.182 9 C -0.063 4.063 10 N -0.278 5.278 11 C 0.334 3.666 12 O -0.398 6.398 13 C -0.245 4.245 14 C -0.047 4.047 15 C -0.217 4.217 16 C -0.056 4.056 17 C -0.276 4.276 18 C 0.099 3.901 19 O -0.087 6.087 20 C -0.500 4.500 21 H 0.124 0.876 22 C -0.218 4.218 23 N -0.535 5.535 24 Si 0.836 3.164 25 H -0.169 1.169 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.269 0.731 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.527 -4.742 -8.539 20.065 hybrid contribution -1.387 -0.702 0.552 1.650 sum 16.140 -5.444 -7.988 18.813 Atomic orbital electron populations 1.19989 0.85985 1.01859 1.01992 1.23488 0.99074 0.88584 1.03674 1.73752 0.89746 1.23561 1.21565 1.84738 1.20437 1.22164 1.68159 1.23349 0.95945 0.83108 1.06489 1.20587 0.82991 0.99410 1.08892 1.23186 0.96007 1.00232 1.00196 1.23261 0.99433 1.04389 0.91084 1.18127 0.91830 0.86714 1.09619 1.42406 1.20667 1.03642 1.61052 1.18696 0.80432 0.88943 0.78576 1.91039 1.54137 1.53292 1.41374 1.19018 0.97879 0.93160 1.14482 1.21328 0.97718 0.92439 0.93234 1.21179 0.98111 0.96197 1.06183 1.21458 0.93068 0.99322 0.91731 1.21300 1.03802 0.92621 1.09922 1.20000 0.90675 0.90060 0.89379 1.84156 1.25647 1.35905 1.63016 1.22020 0.89231 0.96582 1.42183 0.87620 1.26639 1.03825 0.94782 0.96530 1.70302 1.37306 1.03859 1.42056 0.84563 0.74463 0.79360 0.78000 1.16855 1.19621 1.19586 0.92528 0.91382 0.91385 0.82968 0.88789 0.85318 0.84670 0.88864 0.73099 0.82018 0.81695 0.82931 0.85959 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.83 8.40 71.24 0.60 -1.24 16 2 C 0.01 0.44 7.05 43.69 0.31 0.75 16 3 N -0.38 -14.34 12.06 -48.94 -0.59 -14.93 16 4 O 0.11 3.44 11.00 69.51 0.76 4.20 16 5 C -0.02 -0.59 6.97 25.15 0.18 -0.41 16 6 C -0.10 -1.60 6.27 -11.54 -0.07 -1.67 16 7 C -0.16 -1.91 10.19 30.62 0.31 -1.60 16 8 C -0.14 -1.52 10.24 30.62 0.31 -1.21 16 9 C 0.04 1.24 6.85 38.07 0.26 1.50 16 10 N -0.63 -19.68 5.41 -305.64 -1.65 -21.33 16 11 C 0.54 23.15 7.15 86.69 0.62 23.77 16 12 O -0.52 -28.48 10.22 16.81 0.17 -28.31 16 13 C -0.24 -9.68 5.89 -19.99 -0.12 -9.79 16 14 C -0.03 -0.78 9.53 22.52 0.21 -0.56 16 15 C -0.20 -4.72 10.03 22.25 0.22 -4.50 16 16 C -0.04 -1.08 10.03 22.30 0.22 -0.86 16 17 C -0.26 -10.37 9.16 22.36 0.20 -10.16 16 18 C 0.15 7.50 6.66 22.91 0.15 7.65 16 19 O -0.18 -11.21 7.84 0.80 0.01 -11.21 16 20 C -0.42 -24.78 9.49 67.93 0.64 -24.13 16 21 H 0.11 5.55 5.21 -2.91 -0.02 5.54 16 22 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 23 N -0.90 -57.27 13.67 21.62 0.30 -56.97 16 24 Si 1.02 43.46 29.55 68.60 2.03 45.48 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H 0.06 2.91 7.57 -2.39 -0.02 2.89 16 29 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.07 3.31 5.93 -2.39 -0.01 3.29 16 31 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.35 8.02 -2.39 -0.02 1.33 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.43 9.03 6.87 -92.70 -0.64 8.40 16 37 H 0.16 2.67 6.41 -2.91 -0.02 2.65 16 38 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 41 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -84.94 351.24 6.02 -78.92 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.47 Total: 27.17 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.53 Total: -23.03 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -1.95 Total: -93.24 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: 0.94 Total: -35.31 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -84.94 6.02 -78.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.085 kcal (2) G-P(sol) polarization free energy of solvation -84.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds