Wall clock time and date at job start Tue Mar 31 2020 14:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33318 * 126.17227 * 2 1 4 4 C 1.31633 * 108.95710 * 179.97438 * 3 2 1 5 5 C 1.47707 * 125.54162 * 179.97438 * 4 3 2 6 6 C 1.39636 * 120.14566 * 179.75173 * 5 4 3 7 7 C 1.37952 * 119.84187 * 179.67659 * 6 5 4 8 8 C 1.38366 * 120.14752 * 0.61867 * 7 6 5 9 9 C 1.38367 * 120.30947 * 359.67519 * 8 7 6 10 10 C 1.37946 * 120.15133 * 0.02562 * 9 8 7 11 11 O 1.34209 * 108.91267 * 359.75223 * 4 3 2 12 12 C 1.35400 * 107.60002 * 0.39400 * 11 4 3 13 13 C 1.46579 * 126.56394 * 179.87638 * 12 11 4 14 14 O 1.21707 * 120.00097 * 179.68759 * 13 12 11 15 15 N 1.34778 * 119.99575 * 359.69034 * 13 12 11 16 16 C 1.47580 * 134.49093 * 180.02562 * 15 13 12 17 17 C 1.53946 * 86.11983 * 155.35391 * 16 15 13 18 18 O 1.42904 * 113.73900 * 269.15677 * 17 16 15 19 19 C 1.50694 * 113.74528 * 137.94828 * 17 16 15 20 20 H 1.07998 * 120.00335 * 256.77443 * 19 17 16 21 21 C 1.37884 * 119.99828 * 77.04212 * 19 17 16 22 22 N 1.31511 * 120.00288 * 185.83979 * 21 19 17 23 23 Si 1.86797 * 119.99761 * 5.83622 * 21 19 17 24 24 H 1.48504 * 109.47195 * 84.67236 * 23 21 19 25 25 H 1.48506 * 109.47019 * 204.67158 * 23 21 19 26 26 H 1.48507 * 109.47329 * 324.67217 * 23 21 19 27 27 C 1.47810 * 134.45849 * 359.86314 * 15 13 12 28 28 H 1.09006 * 109.47111 * 270.03097 * 1 2 3 29 29 H 1.09003 * 109.47257 * 30.02311 * 1 2 3 30 30 H 1.09001 * 109.47532 * 150.03237 * 1 2 3 31 31 H 1.07998 * 120.08207 * 359.96788 * 6 5 4 32 32 H 1.08001 * 119.92569 * 180.33833 * 7 6 5 33 33 H 1.08002 * 119.84325 * 179.69913 * 8 7 6 34 34 H 1.08004 * 119.92629 * 180.02562 * 9 8 7 35 35 H 1.07999 * 120.07781 * 180.02562 * 10 9 8 36 36 H 1.09003 * 113.76823 * 41.05051 * 16 15 13 37 37 H 1.09001 * 113.86847 * 269.67044 * 16 15 13 38 38 H 0.96705 * 113.99471 * 172.51467 * 18 17 16 39 39 H 0.96993 * 120.00588 * 180.02562 * 22 21 19 40 40 H 1.09000 * 113.76976 * 90.38210 * 27 15 13 41 41 H 1.09007 * 113.83838 * 318.92175 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0762 0.0000 4 6 3.5512 0.6866 0.0006 5 6 4.7271 1.5805 0.0002 6 6 6.0161 1.0437 0.0061 7 6 7.1099 1.8843 -0.0010 8 6 6.9317 3.2565 -0.0010 9 6 5.6572 3.7952 -0.0007 10 6 4.5546 2.9662 0.0002 11 8 3.5910 -0.6549 0.0064 12 6 2.3131 -1.1024 0.0007 13 6 1.8780 -2.5021 0.0014 14 8 0.6909 -2.7704 0.0015 15 7 2.7927 -3.4920 0.0020 16 6 2.7214 -4.9661 0.0024 17 6 4.1211 -4.9296 -0.6376 18 8 4.1000 -4.9092 -2.0663 19 6 5.0708 -5.9574 -0.0786 20 1 5.8376 -5.6600 0.6213 21 6 4.9642 -7.2768 -0.4649 22 7 5.7154 -8.1922 0.1072 23 14 3.7528 -7.7638 -1.8007 24 1 4.3786 -7.5653 -3.1328 25 1 3.3822 -9.1924 -1.6359 26 1 2.5346 -6.9210 -1.6956 27 6 4.2701 -3.5363 -0.0003 28 1 -0.3634 0.0006 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8903 -0.5133 31 1 6.1565 -0.0271 0.0115 32 1 8.1075 1.4705 -0.0020 33 1 7.7915 3.9101 -0.0017 34 1 5.5253 4.8671 -0.0012 35 1 3.5604 3.3880 0.0000 36 1 1.9490 -5.3687 -0.6530 37 1 2.7054 -5.4066 0.9992 38 1 4.9677 -4.7714 -2.4704 39 1 5.6408 -9.1202 -0.1648 40 1 4.7107 -3.5540 0.9965 41 1 4.7320 -2.7997 -0.6579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186800979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:05 Heat of formation + Delta-G solvation = 10.034896 kcal Electronic energy + Delta-G solvation = -27360.692080 eV Core-core repulsion = 23402.033838 eV Total energy + Delta-G solvation = -3958.658242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.39957 -39.79791 -39.29500 -37.75543 -35.40761 -34.35029 -32.91516 -32.55019 -31.32611 -30.43450 -29.44755 -27.47302 -25.78471 -25.45088 -24.24325 -23.06097 -21.49414 -21.33341 -20.24747 -19.15233 -18.00138 -17.66202 -17.03060 -16.94877 -16.17553 -15.86635 -15.41834 -15.16935 -14.92052 -14.75335 -14.21292 -14.04481 -13.78342 -13.53590 -13.36124 -13.17538 -13.11772 -13.05923 -12.76440 -12.33831 -12.23220 -12.08275 -11.78525 -11.46700 -11.33665 -11.20283 -10.91732 -10.81867 -10.67553 -10.17811 -9.97135 -9.81450 -9.32013 -9.19917 -8.91412 -8.80740 -8.48348 -8.09836 -6.35157 -4.50603 0.23076 1.04821 1.27411 2.29083 2.45496 3.13720 3.29722 3.33198 3.39823 3.50717 3.53292 3.64873 4.32123 4.47770 4.57073 4.63970 4.70559 4.75730 4.87233 4.96796 5.05265 5.14310 5.20344 5.41785 5.50137 5.51509 5.63961 5.67944 5.78272 5.80734 5.90684 5.97204 6.07460 6.08089 6.12233 6.13297 6.29612 6.31458 6.34541 6.53508 6.68894 7.23024 7.47439 7.96336 8.01692 8.28932 8.57046 8.68479 9.25324 10.73702 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003557 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.586448 B = 7868.836927 C = 9482.358309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.072 3.928 3 N -0.476 5.476 4 C 0.249 3.751 5 C -0.022 4.022 6 C -0.084 4.084 7 C -0.120 4.120 8 C -0.100 4.100 9 C -0.125 4.125 10 C -0.069 4.069 11 O -0.174 6.174 12 C -0.090 4.090 13 C 0.618 3.382 14 O -0.530 6.530 15 N -0.622 5.622 16 C 0.118 3.882 17 C 0.200 3.800 18 O -0.560 6.560 19 C -0.555 4.555 20 H 0.085 0.915 21 C 0.087 3.913 22 N -0.880 5.880 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.306 1.306 26 H -0.259 1.259 27 C 0.083 3.917 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.374 0.626 39 H 0.270 0.730 40 H 0.093 0.907 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 21.009 -0.137 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 N -0.205 5.205 4 C 0.047 3.953 5 C -0.023 4.023 6 C -0.103 4.103 7 C -0.138 4.138 8 C -0.118 4.118 9 C -0.142 4.142 10 C -0.088 4.088 11 O -0.060 6.060 12 C -0.145 4.145 13 C 0.406 3.594 14 O -0.411 6.411 15 N -0.354 5.354 16 C -0.003 4.003 17 C 0.160 3.840 18 O -0.367 6.367 19 C -0.592 4.592 20 H 0.103 0.897 21 C -0.120 4.120 22 N -0.514 5.514 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.235 1.235 26 H -0.184 1.184 27 C -0.040 4.040 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.222 0.778 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.709 21.284 -0.012 21.296 hybrid contribution 0.418 -0.924 -0.651 1.206 sum -0.291 20.360 -0.663 20.372 Atomic orbital electron populations 1.20367 0.85135 1.04300 1.03635 1.21984 0.98334 0.86190 0.98874 1.70443 0.99723 1.30922 1.19441 1.23914 0.93243 0.78997 0.99181 1.17331 0.87799 0.90973 1.06239 1.21376 0.90961 1.01023 0.96962 1.21130 0.98910 0.93406 1.00392 1.21409 0.97486 0.95351 0.97574 1.21117 0.92077 1.00091 1.00965 1.21213 1.00249 0.90962 0.96354 1.84603 1.29823 1.22582 1.69012 1.23202 0.80670 0.96465 1.14201 1.15920 0.84982 0.80569 0.77954 1.90818 1.15197 1.81657 1.53391 1.50164 1.08291 1.07723 1.69251 1.23940 0.98960 0.76079 1.01347 1.20517 0.92988 0.91324 0.79206 1.86274 1.35464 1.94401 1.20522 1.21077 1.17550 0.91454 1.29151 0.89673 1.25010 0.95196 0.96120 0.95659 1.69923 1.39072 1.01957 1.40479 0.86397 0.82324 0.75679 0.81766 1.20504 1.23467 1.18356 1.24179 0.78255 0.99726 1.01823 0.90126 0.90622 0.88527 0.84716 0.84930 0.85405 0.85062 0.84362 0.90262 0.88006 0.77791 0.92054 0.88933 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.87 36.01 0.36 -0.68 16 2 C 0.07 1.16 7.15 -82.55 -0.59 0.57 16 3 N -0.48 -7.37 10.86 -7.69 -0.08 -7.45 16 4 C 0.25 3.70 7.88 -13.77 -0.11 3.59 16 5 C -0.02 -0.27 5.87 -104.99 -0.62 -0.88 16 6 C -0.08 -0.87 9.72 -39.16 -0.38 -1.26 16 7 C -0.12 -0.99 10.03 -39.64 -0.40 -1.38 16 8 C -0.10 -0.71 10.04 -39.49 -0.40 -1.11 16 9 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 10 C -0.07 -0.68 9.69 -39.17 -0.38 -1.06 16 11 O -0.17 -2.86 9.08 2.83 0.03 -2.84 16 12 C -0.09 -1.60 7.11 -36.82 -0.26 -1.86 16 13 C 0.62 12.27 8.02 -12.90 -0.10 12.16 16 14 O -0.53 -11.29 15.50 5.18 0.08 -11.20 16 15 N -0.62 -12.43 3.61 -179.68 -0.65 -13.08 16 16 C 0.12 2.49 7.28 -2.97 -0.02 2.47 16 17 C 0.20 4.28 0.93 -90.85 -0.08 4.19 16 18 O -0.56 -11.73 10.55 -35.23 -0.37 -12.10 16 19 C -0.56 -13.75 9.16 -34.44 -0.32 -14.06 16 20 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 21 C 0.09 2.28 5.47 -17.82 -0.10 2.19 16 22 N -0.88 -24.70 13.96 55.43 0.77 -23.92 16 23 Si 0.91 21.51 25.58 -169.99 -4.35 17.16 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.31 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.26 -6.09 5.30 56.52 0.30 -5.79 16 27 C 0.08 1.53 7.35 -2.85 -0.02 1.51 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.41 6.45 -51.93 -0.34 1.07 16 31 H 0.13 1.38 7.89 -52.49 -0.41 0.97 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.14 1.32 7.83 -52.49 -0.41 0.91 16 36 H 0.08 1.76 6.82 -51.93 -0.35 1.40 16 37 H 0.10 2.08 8.09 -51.93 -0.42 1.66 16 38 H 0.37 6.56 9.10 45.56 0.41 6.98 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 41 H 0.07 1.24 7.57 -51.92 -0.39 0.85 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -31.30 352.90 -7.18 -38.48 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.11 Total: 6.58 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.82 Total: 3.06 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.04 Total: -44.46 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.27 Total: -26.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.35 Total: 17.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.30 -7.18 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186800979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.516 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds