Wall clock time and date at job start Tue Mar 31 2020 14:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33318 * 126.17227 * 2 1 4 4 C 1.31633 * 108.95710 * 179.97438 * 3 2 1 5 5 C 1.47707 * 125.54162 * 179.97438 * 4 3 2 6 6 C 1.39636 * 120.14566 * 179.75173 * 5 4 3 7 7 C 1.37952 * 119.84187 * 179.67659 * 6 5 4 8 8 C 1.38366 * 120.14752 * 0.61867 * 7 6 5 9 9 C 1.38367 * 120.30947 * 359.67519 * 8 7 6 10 10 C 1.37946 * 120.15133 * 0.02562 * 9 8 7 11 11 O 1.34209 * 108.91267 * 359.75223 * 4 3 2 12 12 C 1.35400 * 107.60002 * 0.39400 * 11 4 3 13 13 C 1.46579 * 126.56394 * 179.87638 * 12 11 4 14 14 O 1.21707 * 120.00097 * 179.68759 * 13 12 11 15 15 N 1.34778 * 119.99575 * 359.69034 * 13 12 11 16 16 C 1.47580 * 134.49093 * 180.02562 * 15 13 12 17 17 C 1.53946 * 86.11983 * 155.35391 * 16 15 13 18 18 O 1.42904 * 113.73900 * 269.15677 * 17 16 15 19 19 C 1.50694 * 113.74528 * 137.94828 * 17 16 15 20 20 H 1.07998 * 120.00335 * 256.77443 * 19 17 16 21 21 C 1.37884 * 119.99828 * 77.04212 * 19 17 16 22 22 N 1.31511 * 120.00288 * 185.83979 * 21 19 17 23 23 Si 1.86797 * 119.99761 * 5.83622 * 21 19 17 24 24 H 1.48504 * 109.47195 * 84.67236 * 23 21 19 25 25 H 1.48506 * 109.47019 * 204.67158 * 23 21 19 26 26 H 1.48507 * 109.47329 * 324.67217 * 23 21 19 27 27 C 1.47810 * 134.45849 * 359.86314 * 15 13 12 28 28 H 1.09006 * 109.47111 * 270.03097 * 1 2 3 29 29 H 1.09003 * 109.47257 * 30.02311 * 1 2 3 30 30 H 1.09001 * 109.47532 * 150.03237 * 1 2 3 31 31 H 1.07998 * 120.08207 * 359.96788 * 6 5 4 32 32 H 1.08001 * 119.92569 * 180.33833 * 7 6 5 33 33 H 1.08002 * 119.84325 * 179.69913 * 8 7 6 34 34 H 1.08004 * 119.92629 * 180.02562 * 9 8 7 35 35 H 1.07999 * 120.07781 * 180.02562 * 10 9 8 36 36 H 1.09003 * 113.76823 * 41.05051 * 16 15 13 37 37 H 1.09001 * 113.86847 * 269.67044 * 16 15 13 38 38 H 0.96705 * 113.99471 * 172.51467 * 18 17 16 39 39 H 0.96993 * 120.00588 * 180.02562 * 22 21 19 40 40 H 1.09000 * 113.76976 * 90.38210 * 27 15 13 41 41 H 1.09007 * 113.83838 * 318.92175 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0762 0.0000 4 6 3.5512 0.6866 0.0006 5 6 4.7271 1.5805 0.0002 6 6 6.0161 1.0437 0.0061 7 6 7.1099 1.8843 -0.0010 8 6 6.9317 3.2565 -0.0010 9 6 5.6572 3.7952 -0.0007 10 6 4.5546 2.9662 0.0002 11 8 3.5910 -0.6549 0.0064 12 6 2.3131 -1.1024 0.0007 13 6 1.8780 -2.5021 0.0014 14 8 0.6909 -2.7704 0.0015 15 7 2.7927 -3.4920 0.0020 16 6 2.7214 -4.9661 0.0024 17 6 4.1211 -4.9296 -0.6376 18 8 4.1000 -4.9092 -2.0663 19 6 5.0708 -5.9574 -0.0786 20 1 5.8376 -5.6600 0.6213 21 6 4.9642 -7.2768 -0.4649 22 7 5.7154 -8.1922 0.1072 23 14 3.7528 -7.7638 -1.8007 24 1 4.3786 -7.5653 -3.1328 25 1 3.3822 -9.1924 -1.6359 26 1 2.5346 -6.9210 -1.6956 27 6 4.2701 -3.5363 -0.0003 28 1 -0.3634 0.0006 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8903 -0.5133 31 1 6.1565 -0.0271 0.0115 32 1 8.1075 1.4705 -0.0020 33 1 7.7915 3.9101 -0.0017 34 1 5.5253 4.8671 -0.0012 35 1 3.5604 3.3880 0.0000 36 1 1.9490 -5.3687 -0.6530 37 1 2.7054 -5.4066 0.9992 38 1 4.9677 -4.7714 -2.4704 39 1 5.6408 -9.1202 -0.1648 40 1 4.7107 -3.5540 0.9965 41 1 4.7320 -2.7997 -0.6579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186800979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:04 Heat of formation + Delta-G solvation = -13.476976 kcal Electronic energy + Delta-G solvation = -27361.711631 eV Core-core repulsion = 23402.033838 eV Total energy + Delta-G solvation = -3959.677793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.59904 -41.38323 -40.01607 -39.33531 -36.64791 -35.98318 -34.55591 -33.87712 -32.00409 -31.47979 -30.94145 -28.86139 -27.39889 -27.06537 -25.35316 -23.84275 -22.65633 -22.36491 -21.71202 -20.67550 -19.76374 -18.74544 -18.38433 -18.21292 -17.49161 -17.05927 -16.87163 -16.47194 -16.39162 -15.91558 -15.63225 -15.16941 -14.95475 -14.84609 -14.57989 -14.43544 -14.32170 -14.15135 -14.02699 -13.92090 -13.85407 -13.33334 -13.04893 -12.65550 -12.63156 -12.44096 -12.31932 -12.26550 -12.00006 -11.95817 -11.51350 -11.06037 -10.81760 -10.78101 -10.58198 -9.98813 -9.86726 -9.36157 -8.39999 -6.55785 -0.80405 0.23369 0.38864 1.07398 1.37048 1.42475 1.45984 1.61570 1.69911 1.85245 2.35588 2.55525 2.79454 2.92167 3.12895 3.40379 3.47715 3.75950 3.91806 3.95603 4.00185 4.22372 4.24748 4.34847 4.36161 4.43682 4.51772 4.56352 4.60963 4.62123 4.66444 4.74336 4.76049 4.88359 5.00204 5.06225 5.15998 5.36151 5.36688 5.44377 5.49975 5.90761 6.01157 6.26938 6.44866 6.57645 6.76033 7.02047 7.24267 8.72414 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003557 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.586448 B = 7868.836927 C = 9482.358309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.083 3.917 3 N -0.490 5.490 4 C 0.265 3.735 5 C -0.057 4.057 6 C -0.094 4.094 7 C -0.123 4.123 8 C -0.086 4.086 9 C -0.121 4.121 10 C -0.073 4.073 11 O -0.182 6.182 12 C -0.129 4.129 13 C 0.618 3.382 14 O -0.553 6.553 15 N -0.627 5.627 16 C 0.114 3.886 17 C 0.199 3.801 18 O -0.565 6.565 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.923 5.923 23 Si 0.958 3.042 24 H -0.274 1.274 25 H -0.312 1.312 26 H -0.258 1.258 27 C 0.098 3.902 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.389 0.611 39 H 0.271 0.729 40 H 0.099 0.901 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 24.237 -0.668 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 N -0.220 5.220 4 C 0.064 3.936 5 C -0.059 4.059 6 C -0.114 4.114 7 C -0.141 4.141 8 C -0.104 4.104 9 C -0.139 4.139 10 C -0.092 4.092 11 O -0.069 6.069 12 C -0.184 4.184 13 C 0.408 3.592 14 O -0.435 6.435 15 N -0.359 5.359 16 C -0.008 4.008 17 C 0.158 3.842 18 O -0.374 6.374 19 C -0.582 4.582 20 H 0.081 0.919 21 C -0.156 4.156 22 N -0.560 5.560 23 Si 0.787 3.213 24 H -0.200 1.200 25 H -0.241 1.241 26 H -0.182 1.182 27 C -0.024 4.024 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.239 0.761 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.213 24.538 -0.554 24.545 hybrid contribution 0.290 -1.687 -0.458 1.772 sum 0.503 22.850 -1.012 22.878 Atomic orbital electron populations 1.20442 0.83530 1.04703 1.04563 1.22440 0.99439 0.85903 0.96481 1.70517 0.99963 1.30455 1.21046 1.24716 0.94140 0.78678 0.96100 1.17557 0.87297 0.91450 1.09553 1.21477 0.91196 1.01262 0.97421 1.21456 0.99155 0.93904 0.99546 1.21876 0.98483 0.95291 0.94743 1.21499 0.91476 1.01381 0.99508 1.21361 1.01263 0.90307 0.96272 1.84566 1.29295 1.23389 1.69689 1.22764 0.81583 0.95694 1.18322 1.16098 0.84636 0.81294 0.77178 1.90789 1.15951 1.82366 1.54367 1.50098 1.08830 1.07160 1.69806 1.23840 0.98365 0.77327 1.01265 1.20364 0.92300 0.92029 0.79501 1.86232 1.36797 1.94425 1.19948 1.21237 1.16991 0.92015 1.27914 0.91912 1.25592 0.96394 0.96398 0.97213 1.70013 1.41208 1.02381 1.42420 0.85605 0.80790 0.74900 0.79992 1.19952 1.24119 1.18228 1.24054 0.77841 0.98257 1.02240 0.88807 0.88351 0.89848 0.85358 0.82715 0.81955 0.82035 0.84485 0.91392 0.87798 0.76073 0.92024 0.88258 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 9.87 71.24 0.70 -1.26 16 2 C 0.08 2.66 7.15 41.94 0.30 2.96 16 3 N -0.49 -14.86 10.86 -292.23 -3.17 -18.03 16 4 C 0.27 7.76 7.88 87.23 0.69 8.44 16 5 C -0.06 -1.30 5.87 -20.10 -0.12 -1.42 16 6 C -0.09 -1.82 9.72 22.54 0.22 -1.60 16 7 C -0.12 -1.62 10.03 22.23 0.22 -1.40 16 8 C -0.09 -0.85 10.04 22.33 0.22 -0.63 16 9 C -0.12 -1.39 10.03 22.23 0.22 -1.16 16 10 C -0.07 -1.30 9.69 22.54 0.22 -1.08 16 11 O -0.18 -5.97 9.08 -12.78 -0.12 -6.08 16 12 C -0.13 -4.59 7.11 24.06 0.17 -4.41 16 13 C 0.62 24.74 8.02 86.42 0.69 25.44 16 14 O -0.55 -23.84 15.50 -4.37 -0.07 -23.91 16 15 N -0.63 -25.05 3.61 -844.41 -3.05 -28.10 16 16 C 0.11 4.84 7.28 86.49 0.63 5.47 16 17 C 0.20 8.42 0.93 -10.89 -0.01 8.41 16 18 O -0.57 -23.05 10.55 -148.98 -1.57 -24.63 16 19 C -0.54 -27.09 9.16 25.60 0.23 -26.86 16 20 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 21 C 0.05 2.46 5.47 84.66 0.46 2.92 16 22 N -0.92 -52.71 13.96 21.45 0.30 -52.41 16 23 Si 0.96 44.50 25.58 68.60 1.75 46.25 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.26 -11.84 5.30 99.48 0.53 -11.32 16 27 C 0.10 3.58 7.35 86.44 0.64 4.22 16 28 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.42 6.45 -2.39 -0.02 2.41 16 31 H 0.13 2.56 7.89 -2.91 -0.02 2.53 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.14 2.40 7.83 -2.91 -0.02 2.38 16 36 H 0.07 3.03 6.82 -2.39 -0.02 3.01 16 37 H 0.10 4.30 8.09 -2.39 -0.02 4.28 16 38 H 0.39 13.08 9.10 -74.05 -0.67 12.40 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.10 3.49 8.09 -2.39 -0.02 3.47 16 41 H 0.09 2.99 7.57 -2.38 -0.02 2.97 16 Total: -1.00 -68.12 352.90 -0.20 -68.32 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.23 Total: 20.56 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 5.50 Total: 18.03 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -5.92 Total: -98.55 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -1.76 Total: -54.62 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.75 Total: 46.25 kcal Total: -68.12 -0.20 -68.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186800979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.841 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds