Wall clock time and date at job start Tue Mar 31 2020 15:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47428 * 2 1 4 4 H 1.09005 * 109.47098 * 305.00248 * 3 2 1 5 5 C 1.50700 * 109.47378 * 185.00221 * 3 2 1 6 6 H 1.08001 * 120.00075 * 239.72263 * 5 3 2 7 7 C 1.37876 * 120.00208 * 59.99579 * 5 3 2 8 8 N 1.31512 * 119.99570 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47192 * 60.00655 * 9 7 5 11 11 H 1.48503 * 109.47269 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47548 * 300.00288 * 9 7 5 13 13 O 1.45199 * 109.47334 * 65.00047 * 3 2 1 14 14 C 1.34713 * 117.00147 * 270.00452 * 13 3 2 15 15 O 1.21469 * 119.99623 * 359.97438 * 14 13 3 16 16 C 1.47743 * 120.00277 * 179.97438 * 14 13 3 17 17 C 1.39657 * 120.11719 * 359.71940 * 16 14 13 18 18 C 1.37956 * 119.95846 * 179.76337 * 17 16 14 19 19 C 1.38287 * 120.21624 * 0.51557 * 18 17 16 20 20 C 1.38837 * 120.24628 * 359.74186 * 19 18 17 21 21 O 1.35902 * 119.98690 * 179.97438 * 20 19 18 22 22 C 1.35671 * 118.00553 * 250.20580 * 21 20 19 23 23 C 1.39125 * 120.07649 * 185.82077 * 22 21 20 24 24 N 1.31970 * 119.91542 * 180.02562 * 23 22 21 25 25 C 1.32243 * 120.06326 * 359.97438 * 24 23 22 26 26 C 1.38197 * 120.15434 * 0.02562 * 25 24 23 27 27 N 1.32234 * 120.08319 * 359.71390 * 26 25 24 28 28 C 1.38502 * 120.03087 * 0.02562 * 20 19 18 29 29 H 1.09007 * 109.47111 * 300.00119 * 1 2 3 30 30 H 1.09002 * 109.47422 * 59.99851 * 1 2 3 31 31 H 1.08996 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47341 * 239.99923 * 2 1 3 33 33 H 1.09002 * 109.47422 * 120.00149 * 2 1 3 34 34 H 0.97008 * 119.99785 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.02484 * 0.02562 * 17 16 14 36 36 H 1.08005 * 119.89430 * 180.23121 * 18 17 16 37 37 H 1.07995 * 119.87913 * 179.71277 * 19 18 17 38 38 H 1.08000 * 120.04236 * 359.97438 * 23 22 21 39 39 H 1.08003 * 119.92155 * 180.02562 * 25 24 23 40 40 H 1.07994 * 119.95743 * 180.02562 * 26 25 24 41 41 H 1.07995 * 120.10546 * 179.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1471 1.8928 0.6501 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3977 0.2176 -2.6510 12 1 6.4995 2.2814 -1.3822 13 8 1.6559 2.0917 1.2407 14 6 0.4685 2.7277 1.2561 15 8 -0.2267 2.7400 0.2601 16 6 0.0119 3.4103 2.4842 17 6 0.8067 3.3927 3.6325 18 6 0.3794 4.0353 4.7760 19 6 -0.8393 4.6886 4.7930 20 6 -1.6389 4.7071 3.6582 21 8 -2.8358 5.3503 3.6810 22 6 -3.9642 4.5979 3.6443 23 6 -5.2086 5.2118 3.5435 24 7 -6.3041 4.4768 3.5086 25 6 -6.2196 3.1585 3.5689 26 6 -4.9850 2.5458 3.6691 27 7 -3.8831 3.2762 3.6994 28 6 -1.2177 4.0694 2.5031 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0605 -2.9503 35 1 1.7572 2.8800 3.6240 36 1 0.9965 4.0242 5.6623 37 1 -1.1706 5.1860 5.6926 38 1 -5.2780 6.2884 3.4946 39 1 -7.1177 2.5592 3.5398 40 1 -4.9196 1.4689 3.7178 41 1 -1.8389 4.0827 1.6198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188070556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:52 Heat of formation + Delta-G solvation = -38.456010 kcal Electronic energy + Delta-G solvation = -26977.284737 eV Core-core repulsion = 23016.523771 eV Total energy + Delta-G solvation = -3960.760965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77354 -40.27223 -39.44910 -37.70299 -35.77300 -34.42043 -33.54509 -31.78727 -31.45343 -31.12246 -29.97452 -27.33989 -25.36752 -24.67493 -24.43009 -23.03815 -22.42920 -20.97430 -19.82324 -18.98885 -18.28185 -17.27235 -17.05115 -16.79827 -16.46703 -16.24707 -15.65794 -15.31607 -15.10951 -14.94312 -14.73413 -14.47755 -13.91718 -13.32794 -13.21461 -13.04092 -12.85020 -12.59169 -12.10932 -11.96425 -11.87664 -11.66786 -11.48299 -11.39220 -11.21861 -11.16540 -10.96903 -10.68411 -10.31862 -9.85775 -9.72310 -9.59513 -9.41100 -9.29072 -9.11712 -8.84615 -8.79690 -8.47636 -6.20739 -4.28155 0.44818 0.70530 0.77693 1.05384 2.48477 3.06489 3.24629 3.28000 3.29755 3.34215 3.52452 3.76379 3.87624 3.92805 4.15836 4.30569 4.70911 4.75273 4.81395 4.90763 5.10501 5.11346 5.15296 5.16742 5.35349 5.47201 5.75327 5.85714 6.10994 6.20616 6.23043 6.27362 6.32200 6.43717 6.50055 6.84642 6.85944 6.93677 7.03790 7.14193 7.20040 7.40801 7.58359 7.70579 7.89809 8.12131 8.57080 8.83980 9.36940 10.86028 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.002807 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.925011 B = 9973.567861 C =10826.743248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.348 6.348 14 C 0.496 3.504 15 O -0.510 6.510 16 C -0.096 4.096 17 C -0.057 4.057 18 C -0.120 4.120 19 C -0.089 4.089 20 C 0.070 3.930 21 O -0.235 6.235 22 C 0.269 3.731 23 C 0.046 3.954 24 N -0.405 5.405 25 C 0.006 3.994 26 C 0.098 3.902 27 N -0.481 5.481 28 C -0.058 4.058 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 6.274 14.918 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.265 6.265 14 C 0.340 3.660 15 O -0.401 6.401 16 C -0.098 4.098 17 C -0.075 4.075 18 C -0.138 4.138 19 C -0.108 4.108 20 C 0.028 3.972 21 O -0.139 6.139 22 C 0.088 3.912 23 C -0.117 4.117 24 N -0.120 5.120 25 C -0.152 4.152 26 C -0.061 4.061 27 N -0.209 5.209 28 C -0.076 4.076 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.195 0.805 39 H 0.192 0.808 40 H 0.192 0.808 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.390 6.427 14.400 21.348 hybrid contribution 0.931 -0.311 -0.334 1.037 sum -13.459 6.116 14.067 20.406 Atomic orbital electron populations 1.21861 0.98393 0.99042 1.00743 1.22021 0.92617 0.99270 1.03433 1.20724 0.95063 0.88768 0.78416 0.93447 1.20986 0.89543 1.39063 1.06447 0.91320 1.24883 0.99268 0.94741 0.95017 1.69881 1.35503 1.37706 1.09425 0.86332 0.83808 0.78499 0.77491 1.19912 1.21025 1.19983 1.86519 1.33323 1.62301 1.44312 1.20825 0.81195 0.76957 0.87032 1.90781 1.55558 1.58587 1.35152 1.19261 0.95454 1.01338 0.93719 1.21709 0.99465 0.95201 0.91148 1.21015 0.95895 0.98061 0.98792 1.21259 0.95110 0.98073 0.96337 1.18278 0.84933 1.00010 0.93946 1.84693 1.10609 1.32102 1.86504 1.21236 0.87765 0.88726 0.93431 1.22909 0.85107 1.02063 1.01615 1.68496 1.29425 1.06963 1.07102 1.23644 0.99345 0.91527 1.00680 1.23625 0.87524 1.01562 0.93402 1.68196 1.33340 1.05148 1.14216 1.21328 0.95250 0.93382 0.97671 0.94961 0.92855 0.94765 0.87263 0.93888 0.92291 0.83412 0.84338 0.84904 0.80457 0.80840 0.80779 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.56 37.15 0.32 -2.85 16 2 C -0.14 -3.35 5.49 -26.74 -0.15 -3.50 16 3 C 0.22 5.87 2.25 -27.88 -0.06 5.81 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.42 8.90 -34.44 -0.31 -14.72 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.87 11.29 55.43 0.63 -24.24 16 9 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 O -0.35 -8.18 9.05 -40.53 -0.37 -8.55 16 14 C 0.50 10.63 6.35 34.62 0.22 10.85 16 15 O -0.51 -12.07 13.53 -19.24 -0.26 -12.33 16 16 C -0.10 -1.64 5.87 -105.00 -0.62 -2.26 16 17 C -0.06 -0.80 9.61 -39.16 -0.38 -1.18 16 18 C -0.12 -1.31 10.02 -39.67 -0.40 -1.71 16 19 C -0.09 -1.00 9.98 -39.34 -0.39 -1.39 16 20 C 0.07 0.94 5.26 -39.26 -0.21 0.73 16 21 O -0.24 -2.92 9.98 -2.92 -0.03 -2.95 16 22 C 0.27 3.18 7.33 -16.92 -0.12 3.05 16 23 C 0.05 0.45 11.18 -17.16 -0.19 0.26 16 24 N -0.41 -4.05 10.49 -12.92 -0.14 -4.19 16 25 C 0.01 0.05 11.21 -17.39 -0.19 -0.14 16 26 C 0.10 0.89 11.22 -17.39 -0.20 0.70 16 27 N -0.48 -5.91 9.20 -13.12 -0.12 -6.03 16 28 C -0.06 -0.90 8.95 -39.00 -0.35 -1.25 16 29 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 30 H 0.05 1.24 7.79 -51.93 -0.40 0.83 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 2.28 7.65 -52.49 -0.40 1.88 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -32.22 356.79 -7.75 -39.98 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.71 Total: 3.10 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -3.12 Total: -5.97 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.37 Total: -34.46 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.66 Total: -23.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.22 -7.75 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188070556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.521 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds