Wall clock time and date at job start Tue Mar 31 2020 15:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47428 * 2 1 4 4 H 1.09005 * 109.47098 * 305.00248 * 3 2 1 5 5 C 1.50700 * 109.47378 * 185.00221 * 3 2 1 6 6 H 1.08001 * 120.00075 * 239.72263 * 5 3 2 7 7 C 1.37876 * 120.00208 * 59.99579 * 5 3 2 8 8 N 1.31512 * 119.99570 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47192 * 60.00655 * 9 7 5 11 11 H 1.48503 * 109.47269 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47548 * 300.00288 * 9 7 5 13 13 O 1.45199 * 109.47334 * 65.00047 * 3 2 1 14 14 C 1.34713 * 117.00147 * 270.00452 * 13 3 2 15 15 O 1.21469 * 119.99623 * 359.97438 * 14 13 3 16 16 C 1.47743 * 120.00277 * 179.97438 * 14 13 3 17 17 C 1.39657 * 120.11719 * 359.71940 * 16 14 13 18 18 C 1.37956 * 119.95846 * 179.76337 * 17 16 14 19 19 C 1.38287 * 120.21624 * 0.51557 * 18 17 16 20 20 C 1.38837 * 120.24628 * 359.74186 * 19 18 17 21 21 O 1.35902 * 119.98690 * 179.97438 * 20 19 18 22 22 C 1.35671 * 118.00553 * 250.20580 * 21 20 19 23 23 C 1.39125 * 120.07649 * 185.82077 * 22 21 20 24 24 N 1.31970 * 119.91542 * 180.02562 * 23 22 21 25 25 C 1.32243 * 120.06326 * 359.97438 * 24 23 22 26 26 C 1.38197 * 120.15434 * 0.02562 * 25 24 23 27 27 N 1.32234 * 120.08319 * 359.71390 * 26 25 24 28 28 C 1.38502 * 120.03087 * 0.02562 * 20 19 18 29 29 H 1.09007 * 109.47111 * 300.00119 * 1 2 3 30 30 H 1.09002 * 109.47422 * 59.99851 * 1 2 3 31 31 H 1.08996 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47341 * 239.99923 * 2 1 3 33 33 H 1.09002 * 109.47422 * 120.00149 * 2 1 3 34 34 H 0.97008 * 119.99785 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.02484 * 0.02562 * 17 16 14 36 36 H 1.08005 * 119.89430 * 180.23121 * 18 17 16 37 37 H 1.07995 * 119.87913 * 179.71277 * 19 18 17 38 38 H 1.08000 * 120.04236 * 359.97438 * 23 22 21 39 39 H 1.08003 * 119.92155 * 180.02562 * 25 24 23 40 40 H 1.07994 * 119.95743 * 180.02562 * 26 25 24 41 41 H 1.07995 * 120.10546 * 179.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1471 1.8928 0.6501 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3977 0.2176 -2.6510 12 1 6.4995 2.2814 -1.3822 13 8 1.6559 2.0917 1.2407 14 6 0.4685 2.7277 1.2561 15 8 -0.2267 2.7400 0.2601 16 6 0.0119 3.4103 2.4842 17 6 0.8067 3.3927 3.6325 18 6 0.3794 4.0353 4.7760 19 6 -0.8393 4.6886 4.7930 20 6 -1.6389 4.7071 3.6582 21 8 -2.8358 5.3503 3.6810 22 6 -3.9642 4.5979 3.6443 23 6 -5.2086 5.2118 3.5435 24 7 -6.3041 4.4768 3.5086 25 6 -6.2196 3.1585 3.5689 26 6 -4.9850 2.5458 3.6691 27 7 -3.8831 3.2762 3.6994 28 6 -1.2177 4.0694 2.5031 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0605 -2.9503 35 1 1.7572 2.8800 3.6240 36 1 0.9965 4.0242 5.6623 37 1 -1.1706 5.1860 5.6926 38 1 -5.2780 6.2884 3.4946 39 1 -7.1177 2.5592 3.5398 40 1 -4.9196 1.4689 3.7178 41 1 -1.8389 4.0827 1.6198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188070556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:50 Heat of formation + Delta-G solvation = -58.710108 kcal Electronic energy + Delta-G solvation = -26978.163020 eV Core-core repulsion = 23016.523771 eV Total energy + Delta-G solvation = -3961.639249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -42.59371 -41.60663 -40.73710 -38.80938 -37.60118 -35.54053 -35.19234 -33.45788 -32.59366 -32.29876 -30.94752 -29.34531 -26.19161 -26.05131 -25.33707 -24.87054 -23.40785 -22.53403 -21.51327 -20.27313 -19.13146 -18.81860 -18.37315 -17.91806 -17.72444 -17.38636 -17.11491 -17.01637 -16.49989 -16.04858 -15.79927 -15.55330 -15.02943 -14.84573 -14.77851 -14.27351 -14.02221 -13.88580 -13.55331 -13.35977 -13.33350 -13.14355 -12.93498 -12.82534 -12.72713 -12.63747 -12.53242 -12.16336 -12.15306 -11.80234 -11.53950 -11.38017 -10.86539 -10.55280 -10.36206 -10.20807 -10.15336 -9.73297 -8.28538 -6.45813 -0.46293 -0.25880 -0.07090 0.07882 1.39349 1.42490 1.45363 1.53284 1.74904 1.95188 2.40113 2.61099 2.68347 2.98539 3.01281 3.29915 3.42392 3.64923 3.74418 3.91858 4.04451 4.13796 4.18214 4.26027 4.32761 4.34951 4.44530 4.49442 4.56980 4.67556 4.79230 5.00328 5.06572 5.13373 5.16896 5.18861 5.20965 5.33104 5.48915 5.54651 5.63197 5.91592 6.06418 6.08905 6.16355 6.57819 6.65727 6.89446 7.25067 8.78308 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.002807 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.925011 B = 9973.567861 C =10826.743248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.982 3.018 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.269 1.269 13 O -0.352 6.352 14 C 0.492 3.508 15 O -0.544 6.544 16 C -0.123 4.123 17 C -0.061 4.061 18 C -0.099 4.099 19 C -0.072 4.072 20 C 0.071 3.929 21 O -0.239 6.239 22 C 0.244 3.756 23 C 0.047 3.953 24 N -0.422 5.422 25 C 0.019 3.981 26 C 0.089 3.911 27 N -0.511 5.511 28 C -0.069 4.069 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.271 0.729 35 H 0.148 0.852 36 H 0.184 0.816 37 H 0.170 0.830 38 H 0.199 0.801 39 H 0.211 0.789 40 H 0.201 0.799 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 6.409 17.744 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.194 1.194 13 O -0.268 6.268 14 C 0.338 3.662 15 O -0.437 6.437 16 C -0.124 4.124 17 C -0.079 4.079 18 C -0.116 4.116 19 C -0.090 4.090 20 C 0.028 3.972 21 O -0.144 6.144 22 C 0.065 3.935 23 C -0.114 4.114 24 N -0.137 5.137 25 C -0.139 4.139 26 C -0.070 4.070 27 N -0.239 5.239 28 C -0.088 4.088 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.201 0.799 37 H 0.188 0.812 38 H 0.215 0.785 39 H 0.228 0.772 40 H 0.217 0.783 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.539 6.580 17.246 23.497 hybrid contribution 0.786 -0.330 -1.154 1.435 sum -13.753 6.251 16.092 22.071 Atomic orbital electron populations 1.21704 0.96566 1.00599 0.99775 1.21866 0.94190 0.98011 1.02576 1.20436 0.94753 0.89267 0.78273 0.97798 1.21286 0.90202 1.40037 1.07205 0.91286 1.25824 1.04353 0.93830 0.94271 1.70013 1.37588 1.37861 1.09824 0.85242 0.77503 0.78774 0.77958 1.18623 1.20304 1.19445 1.86497 1.34757 1.62835 1.42698 1.21671 0.79972 0.76166 0.88356 1.90749 1.56161 1.59898 1.36894 1.19036 0.97066 1.03483 0.92846 1.21822 0.99133 0.95726 0.91195 1.21449 0.95791 0.95662 0.98737 1.21724 0.94269 0.96526 0.96504 1.18409 0.85718 0.99324 0.93717 1.84659 1.10514 1.32224 1.86972 1.21411 0.87893 0.88929 0.95279 1.23231 0.84418 1.03098 1.00683 1.68589 1.29327 1.07922 1.07847 1.24250 1.00342 0.91204 0.98112 1.24147 0.87190 1.02706 0.92932 1.68141 1.35087 1.05722 1.14963 1.21170 0.94710 0.94725 0.98155 0.94923 0.94812 0.91756 0.89337 0.93227 0.91995 0.83402 0.79879 0.81232 0.78470 0.77247 0.78252 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.56 71.98 0.62 -5.27 16 2 C -0.13 -6.58 5.49 30.59 0.17 -6.41 16 3 C 0.23 12.53 2.25 29.85 0.07 12.60 16 4 H 0.00 0.27 7.16 -2.38 -0.02 0.25 16 5 C -0.55 -31.26 8.90 25.60 0.23 -31.03 16 6 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.92 -52.66 11.29 21.45 0.24 -52.42 16 9 Si 0.98 42.76 29.54 68.60 2.03 44.78 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 O -0.35 -17.31 9.05 -56.23 -0.51 -17.82 16 14 C 0.49 22.33 6.35 70.34 0.45 22.78 16 15 O -0.54 -27.74 13.53 19.94 0.27 -27.47 16 16 C -0.12 -4.32 5.87 -20.11 -0.12 -4.44 16 17 C -0.06 -1.64 9.61 22.55 0.22 -1.42 16 18 C -0.10 -1.82 10.02 22.21 0.22 -1.60 16 19 C -0.07 -1.37 9.98 22.42 0.22 -1.15 16 20 C 0.07 1.82 5.26 22.48 0.12 1.94 16 21 O -0.24 -5.79 9.98 -33.35 -0.33 -6.12 16 22 C 0.24 5.64 7.33 84.80 0.62 6.26 16 23 C 0.05 0.89 11.18 84.89 0.95 1.84 16 24 N -0.42 -7.76 10.49 -194.80 -2.04 -9.81 16 25 C 0.02 0.28 11.21 84.62 0.95 1.22 16 26 C 0.09 1.49 11.22 84.62 0.95 2.44 16 27 N -0.51 -12.26 9.20 -308.16 -2.83 -15.09 16 28 C -0.07 -2.23 8.95 22.64 0.20 -2.03 16 29 H 0.03 1.45 6.06 -2.38 -0.01 1.44 16 30 H 0.03 1.63 7.79 -2.39 -0.02 1.61 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 4.92 5.95 -2.39 -0.01 4.90 16 33 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 35 H 0.15 3.96 7.61 -2.91 -0.02 3.94 16 36 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.21 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.11 4.11 7.65 -2.91 -0.02 4.09 16 Total: -1.00 -74.47 356.79 4.19 -70.28 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.06 Total: 16.55 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 6.31 Total: -2.88 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -4.64 Total: -77.32 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.57 Total: -51.42 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.47 4.19 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188070556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.574 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds