Wall clock time and date at job start Tue Mar 31 2020 14:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33010 * 125.23417 * 2 1 4 4 C 1.31605 * 109.69191 * 180.02562 * 3 2 1 5 5 C 1.46714 * 134.55471 * 180.02562 * 4 3 2 6 6 C 1.39313 * 122.05785 * 359.97438 * 5 4 3 7 7 C 1.37758 * 119.61648 * 180.02562 * 6 5 4 8 8 C 1.38889 * 120.56028 * 359.91399 * 7 6 5 9 9 C 1.37598 * 120.79262 * 0.06277 * 8 7 6 10 10 C 1.39776 * 119.76237 * 359.97438 * 9 8 7 11 11 N 1.35448 * 121.38813 * 180.16484 * 10 9 8 12 12 C 1.30872 * 121.97736 * 180.21391 * 11 10 9 13 13 S 1.76199 * 118.62265 * 179.83867 * 12 11 10 14 14 C 1.81004 * 100.00092 * 359.73607 * 13 12 11 15 15 H 1.08998 * 109.47109 * 304.99430 * 14 13 12 16 16 C 1.52997 * 109.47052 * 65.00100 * 14 13 12 17 17 C 1.53004 * 109.46784 * 184.99786 * 14 13 12 18 18 C 1.50701 * 109.47211 * 65.00334 * 17 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 N 1.36851 * 107.72214 * 359.97438 * 4 3 2 27 27 N 1.31006 * 125.23712 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47239 * 269.98237 * 1 2 3 29 29 H 1.09003 * 109.47295 * 29.99028 * 1 2 3 30 30 H 1.09005 * 109.46848 * 149.98570 * 1 2 3 31 31 H 1.08000 * 120.18978 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.72087 * 179.97438 * 7 6 5 33 33 H 1.08006 * 119.60386 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.12020 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46991 * 180.02562 * 16 14 13 36 36 H 1.09004 * 109.46837 * 299.99581 * 16 14 13 37 37 H 1.08998 * 109.47711 * 59.99698 * 16 14 13 38 38 H 1.09000 * 109.47211 * 304.99361 * 17 14 13 39 39 H 1.09007 * 109.46376 * 184.99903 * 17 14 13 40 40 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2743 1.0864 0.0000 4 6 3.5422 0.7338 -0.0006 5 6 4.8140 1.4652 -0.0004 6 6 4.8664 2.8574 0.0001 7 6 6.0888 3.4926 -0.0003 8 6 7.2669 2.7571 0.0007 9 6 7.2384 1.3814 0.0008 10 6 6.0109 0.7128 0.0004 11 7 5.9445 -0.6400 0.0038 12 6 4.8017 -1.2779 -0.0007 13 16 4.8185 -3.0398 0.0000 14 6 6.6039 -3.3372 -0.0008 15 1 7.0587 -2.8158 -0.8431 16 6 7.2078 -2.8192 1.3060 17 6 6.8707 -4.8386 -0.1261 18 6 6.3850 -5.3249 -1.4672 19 1 5.9309 -4.6325 -2.1606 20 6 6.5145 -6.6550 -1.8063 21 7 7.0671 -7.4982 -0.9618 22 14 5.9053 -7.2594 -3.4655 23 1 7.0005 -7.1549 -4.4630 24 1 5.4756 -8.6761 -3.3490 25 1 4.7558 -6.4278 -3.9037 26 7 3.5943 -0.6337 -0.0003 27 7 2.2628 -1.0700 -0.0005 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5141 31 1 3.9540 3.4352 -0.0002 32 1 6.1313 4.5718 -0.0004 33 1 8.2168 3.2711 0.0008 34 1 8.1612 0.8202 0.0020 35 1 8.2830 -2.9979 1.3053 36 1 7.0177 -1.7495 1.3952 37 1 6.7530 -3.3405 2.1483 38 1 6.3422 -5.3689 0.6661 39 1 7.9409 -5.0259 -0.0375 40 1 7.1579 -8.4340 -1.2002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188284569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:33 Heat of formation + Delta-G solvation = 131.809783 kcal Electronic energy + Delta-G solvation = -24651.471649 eV Core-core repulsion = 21173.139584 eV Total energy + Delta-G solvation = -3478.332064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78412 -39.80997 -37.16405 -34.74734 -33.41459 -32.90557 -32.13140 -30.87365 -30.06305 -28.73312 -27.53270 -24.77295 -24.29503 -23.39647 -22.39480 -20.89955 -20.70231 -19.61482 -18.73949 -16.99754 -16.61388 -16.43998 -16.22476 -15.59280 -15.03204 -14.66333 -14.53495 -14.24859 -14.11224 -13.78860 -13.17005 -13.04603 -12.85731 -12.80472 -12.46483 -12.33142 -12.06003 -11.96800 -11.78616 -11.59188 -11.19119 -10.87046 -10.70429 -10.62977 -10.55918 -10.49868 -10.24442 -9.96209 -9.63439 -9.58417 -9.26672 -8.93099 -8.74900 -8.46906 -7.33571 -6.11927 -4.15198 0.15394 0.42574 1.25901 1.50211 1.98695 2.40909 2.63825 2.67408 3.27978 3.34734 3.37945 3.39525 3.74047 3.96469 4.37228 4.38796 4.41245 4.62300 4.73082 5.03398 5.12087 5.25794 5.32609 5.33994 5.43118 5.53868 5.63421 5.71028 5.76264 5.84748 5.99662 6.03929 6.06543 6.16949 6.19444 6.35033 6.44704 6.51803 6.52814 6.70377 7.40845 7.45505 7.49523 7.76021 7.84291 8.19038 8.89351 9.50112 10.98822 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003904 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.802193 B = 7170.123948 C = 8618.732661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.245 3.755 3 N -0.525 5.525 4 C 0.328 3.672 5 C -0.098 4.098 6 C -0.052 4.052 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.102 4.102 10 C 0.155 3.845 11 N -0.497 5.497 12 C 0.365 3.635 13 S 0.070 5.930 14 C -0.068 4.068 15 H 0.097 0.903 16 C -0.148 4.148 17 C 0.037 3.963 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.271 1.271 26 N -0.337 5.337 27 N -0.292 5.292 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.028 0.972 39 H 0.043 0.957 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 20.610 3.947 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.036 4.036 3 N -0.254 5.254 4 C 0.060 3.940 5 C -0.106 4.106 6 C -0.072 4.072 7 C -0.156 4.156 8 C -0.099 4.099 9 C -0.123 4.123 10 C 0.039 3.961 11 N -0.221 5.221 12 C -0.004 4.004 13 S 0.310 5.690 14 C -0.197 4.197 15 H 0.115 0.885 16 C -0.207 4.207 17 C -0.002 4.002 18 C -0.566 4.566 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.196 1.196 26 N -0.123 5.123 27 N -0.120 5.120 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.156 18.695 3.972 19.796 hybrid contribution 0.261 0.893 -0.969 1.344 sum -4.894 19.589 3.003 20.413 Atomic orbital electron populations 1.20196 0.82735 1.04610 1.04243 1.24700 0.98667 0.85001 0.95267 1.70353 0.98094 1.29976 1.26932 1.22712 0.93543 0.82498 0.95294 1.18394 0.87145 0.94599 1.10424 1.20981 0.99034 0.91698 0.95512 1.21149 0.91718 1.00387 1.02354 1.21252 0.98817 0.93420 0.96391 1.20824 0.95990 0.93963 1.01492 1.18768 0.92729 0.88391 0.96257 1.69403 1.18853 1.08771 1.25093 1.25846 0.78919 1.02949 0.92713 1.86942 1.14180 0.83749 1.84113 1.23857 0.89645 1.04778 1.01426 0.88455 1.22120 1.01122 1.01596 0.95859 1.19126 0.98491 0.84471 0.98129 1.21238 1.40110 0.94107 1.01179 0.91951 1.24966 0.94960 0.96819 0.97159 1.69942 1.43656 1.03874 1.35499 0.86591 0.79335 0.78123 0.84080 1.20539 1.21097 1.19607 1.48760 1.05781 1.06827 1.50933 1.78383 0.83715 1.21451 1.28473 0.89250 0.89141 0.89269 0.84443 0.84960 0.84773 0.83928 0.91700 0.91502 0.92709 0.95421 0.93883 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.25 3.67 8.10 -156.81 -1.27 2.40 16 3 N -0.52 -8.33 11.22 -8.65 -0.10 -8.43 16 4 C 0.33 5.51 7.97 -154.67 -1.23 4.28 16 5 C -0.10 -1.43 5.89 -104.88 -0.62 -2.05 16 6 C -0.05 -0.58 9.86 -39.36 -0.39 -0.96 16 7 C -0.14 -1.18 10.02 -39.52 -0.40 -1.58 16 8 C -0.08 -0.69 10.00 -39.57 -0.40 -1.08 16 9 C -0.10 -1.17 10.02 -39.24 -0.39 -1.57 16 10 C 0.16 2.32 6.63 -84.50 -0.56 1.76 16 11 N -0.50 -8.50 6.65 -10.74 -0.07 -8.57 16 12 C 0.37 6.77 7.77 -88.39 -0.69 6.09 16 13 S 0.07 1.39 20.87 -107.50 -2.24 -0.85 16 14 C -0.07 -1.35 2.13 -26.73 -0.06 -1.41 16 15 H 0.10 1.98 7.94 -51.92 -0.41 1.57 16 16 C -0.15 -2.51 8.96 37.16 0.33 -2.18 16 17 C 0.04 0.89 4.44 -27.88 -0.12 0.76 16 18 C -0.53 -14.18 8.53 -34.44 -0.29 -14.47 16 19 H 0.06 1.66 7.60 -52.49 -0.40 1.27 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 22 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 N -0.34 -6.18 3.95 -10.85 -0.04 -6.22 16 27 N -0.29 -5.19 12.62 32.43 0.41 -4.78 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.09 5.63 -51.93 -0.29 0.79 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -31.61 354.45 -11.68 -43.29 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.89 Total: -2.54 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -5.80 Total: -8.55 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.93 Total: -53.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.24 Total: -0.85 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.61 -11.68 -43.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188284569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.101 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds