Wall clock time and date at job start Tue Mar 31 2020 14:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33010 * 125.23417 * 2 1 4 4 C 1.31605 * 109.69191 * 180.02562 * 3 2 1 5 5 C 1.46714 * 134.55471 * 180.02562 * 4 3 2 6 6 C 1.39313 * 122.05785 * 359.97438 * 5 4 3 7 7 C 1.37758 * 119.61648 * 180.02562 * 6 5 4 8 8 C 1.38889 * 120.56028 * 359.91399 * 7 6 5 9 9 C 1.37598 * 120.79262 * 0.06277 * 8 7 6 10 10 C 1.39776 * 119.76237 * 359.97438 * 9 8 7 11 11 N 1.35448 * 121.38813 * 180.16484 * 10 9 8 12 12 C 1.30872 * 121.97736 * 180.21391 * 11 10 9 13 13 S 1.76199 * 118.62265 * 179.83867 * 12 11 10 14 14 C 1.81004 * 100.00092 * 359.73607 * 13 12 11 15 15 H 1.08998 * 109.47109 * 304.99430 * 14 13 12 16 16 C 1.52997 * 109.47052 * 65.00100 * 14 13 12 17 17 C 1.53004 * 109.46784 * 184.99786 * 14 13 12 18 18 C 1.50701 * 109.47211 * 65.00334 * 17 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 N 1.36851 * 107.72214 * 359.97438 * 4 3 2 27 27 N 1.31006 * 125.23712 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47239 * 269.98237 * 1 2 3 29 29 H 1.09003 * 109.47295 * 29.99028 * 1 2 3 30 30 H 1.09005 * 109.46848 * 149.98570 * 1 2 3 31 31 H 1.08000 * 120.18978 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.72087 * 179.97438 * 7 6 5 33 33 H 1.08006 * 119.60386 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.12020 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46991 * 180.02562 * 16 14 13 36 36 H 1.09004 * 109.46837 * 299.99581 * 16 14 13 37 37 H 1.08998 * 109.47711 * 59.99698 * 16 14 13 38 38 H 1.09000 * 109.47211 * 304.99361 * 17 14 13 39 39 H 1.09007 * 109.46376 * 184.99903 * 17 14 13 40 40 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2743 1.0864 0.0000 4 6 3.5422 0.7338 -0.0006 5 6 4.8140 1.4652 -0.0004 6 6 4.8664 2.8574 0.0001 7 6 6.0888 3.4926 -0.0003 8 6 7.2669 2.7571 0.0007 9 6 7.2384 1.3814 0.0008 10 6 6.0109 0.7128 0.0004 11 7 5.9445 -0.6400 0.0038 12 6 4.8017 -1.2779 -0.0007 13 16 4.8185 -3.0398 0.0000 14 6 6.6039 -3.3372 -0.0008 15 1 7.0587 -2.8158 -0.8431 16 6 7.2078 -2.8192 1.3060 17 6 6.8707 -4.8386 -0.1261 18 6 6.3850 -5.3249 -1.4672 19 1 5.9309 -4.6325 -2.1606 20 6 6.5145 -6.6550 -1.8063 21 7 7.0671 -7.4982 -0.9618 22 14 5.9053 -7.2594 -3.4655 23 1 7.0005 -7.1549 -4.4630 24 1 5.4756 -8.6761 -3.3490 25 1 4.7558 -6.4278 -3.9037 26 7 3.5943 -0.6337 -0.0003 27 7 2.2628 -1.0700 -0.0005 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5141 31 1 3.9540 3.4352 -0.0002 32 1 6.1313 4.5718 -0.0004 33 1 8.2168 3.2711 0.0008 34 1 8.1612 0.8202 0.0020 35 1 8.2830 -2.9979 1.3053 36 1 7.0177 -1.7495 1.3952 37 1 6.7530 -3.3405 2.1483 38 1 6.3422 -5.3689 0.6661 39 1 7.9409 -5.0259 -0.0375 40 1 7.1579 -8.4340 -1.2002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188284569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:31 Heat of formation + Delta-G solvation = 116.268640 kcal Electronic energy + Delta-G solvation = -24652.145563 eV Core-core repulsion = 21173.139584 eV Total energy + Delta-G solvation = -3479.005979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -43.96442 -40.84631 -38.23836 -36.53676 -34.62703 -34.00949 -33.98642 -31.78957 -31.15739 -29.74995 -29.33966 -25.88883 -25.37109 -25.29654 -23.41293 -22.48038 -21.85747 -20.68657 -19.94218 -18.56662 -18.22015 -17.82830 -17.30780 -16.78142 -16.53510 -16.29979 -15.56920 -15.34953 -15.04640 -14.87492 -14.71621 -14.34031 -13.98611 -13.80787 -13.70458 -13.53906 -13.40538 -13.30802 -13.18591 -12.84642 -12.70050 -12.57089 -12.38752 -12.33534 -11.71717 -11.66201 -11.55494 -11.38011 -11.33715 -11.17744 -11.04099 -10.57804 -10.02488 -9.83860 -8.70437 -8.23697 -6.32797 -0.97890 -0.61385 -0.13736 0.50271 0.73787 1.16443 1.31236 1.37697 1.39050 1.49906 1.54989 2.30976 2.38521 2.76607 2.81570 3.11589 3.35156 3.40097 3.64149 3.99929 4.05986 4.18053 4.22502 4.30209 4.49894 4.52046 4.60254 4.65016 4.69688 4.81305 4.88695 4.89302 4.96914 5.00963 5.13292 5.23953 5.25349 5.32752 5.35977 5.38411 5.46391 5.73044 5.73596 6.12615 6.28191 6.57453 6.78695 7.35754 8.87644 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003904 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.802193 B = 7170.123948 C = 8618.732661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.246 3.754 3 N -0.532 5.532 4 C 0.315 3.685 5 C -0.112 4.112 6 C -0.061 4.061 7 C -0.107 4.107 8 C -0.062 4.062 9 C -0.103 4.103 10 C 0.113 3.887 11 N -0.490 5.490 12 C 0.350 3.650 13 S 0.019 5.981 14 C -0.050 4.050 15 H 0.090 0.910 16 C -0.137 4.137 17 C 0.045 3.955 18 C -0.538 4.538 19 H 0.059 0.941 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.952 3.048 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.270 1.270 26 N -0.349 5.349 27 N -0.335 5.335 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.150 0.850 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.153 0.847 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.005 0.995 39 H 0.028 0.972 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 24.515 3.504 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.035 4.035 3 N -0.261 5.261 4 C 0.047 3.953 5 C -0.119 4.119 6 C -0.082 4.082 7 C -0.126 4.126 8 C -0.082 4.082 9 C -0.124 4.124 10 C -0.003 4.003 11 N -0.212 5.212 12 C -0.022 4.022 13 S 0.257 5.743 14 C -0.180 4.180 15 H 0.109 0.891 16 C -0.196 4.196 17 C 0.006 3.994 18 C -0.576 4.576 19 H 0.077 0.923 20 C -0.187 4.187 21 N -0.565 5.565 22 Si 0.777 3.223 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.195 1.195 26 N -0.135 5.135 27 N -0.163 5.163 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.167 0.833 32 H 0.195 0.805 33 H 0.196 0.804 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.046 0.954 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.632 22.652 3.528 23.388 hybrid contribution 0.174 0.068 -0.801 0.822 sum -4.458 22.720 2.727 23.313 Atomic orbital electron populations 1.20477 0.79157 1.05998 1.05912 1.25708 1.00507 0.84123 0.93147 1.70411 0.97866 1.30085 1.27711 1.23348 0.94711 0.82243 0.95030 1.18696 0.86090 0.96117 1.10991 1.21269 1.00993 0.90169 0.95724 1.21730 0.90322 1.02555 0.98011 1.21794 1.00879 0.92110 0.93387 1.21156 0.94945 0.95483 1.00773 1.19181 0.94383 0.87483 0.99232 1.69281 1.18520 1.10547 1.22883 1.25203 0.79773 1.01644 0.95608 1.86856 1.14082 0.86669 1.86653 1.23522 0.89972 1.01731 1.02731 0.89132 1.22036 1.01535 1.01888 0.94121 1.18903 0.96943 0.87251 0.96302 1.21545 1.39654 0.94307 1.02077 0.92323 1.25759 0.95227 0.97106 1.00586 1.70047 1.45010 1.04188 1.37297 0.85630 0.78944 0.77585 0.80095 1.19526 1.20579 1.19491 1.48742 1.05763 1.07447 1.51563 1.78344 0.83925 1.23207 1.30870 0.87245 0.87110 0.88411 0.83264 0.80529 0.80360 0.82977 0.90437 0.90591 0.92809 0.97716 0.95416 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.51 71.23 0.75 -0.25 16 2 C 0.25 7.41 8.10 138.61 1.12 8.53 16 3 N -0.53 -16.80 11.22 -181.29 -2.03 -18.84 16 4 C 0.31 10.67 7.97 136.02 1.08 11.75 16 5 C -0.11 -3.15 5.89 -20.03 -0.12 -3.27 16 6 C -0.06 -1.17 9.86 22.41 0.22 -0.95 16 7 C -0.11 -1.27 10.02 22.31 0.22 -1.05 16 8 C -0.06 -0.75 10.00 22.27 0.22 -0.53 16 9 C -0.10 -2.07 10.02 22.49 0.23 -1.85 16 10 C 0.11 3.27 6.63 39.73 0.26 3.53 16 11 N -0.49 -17.03 6.65 -187.88 -1.25 -18.28 16 12 C 0.35 13.55 7.77 179.57 1.39 14.94 16 13 S 0.02 0.81 20.87 -56.49 -1.18 -0.37 16 14 C -0.05 -2.10 2.13 30.59 0.07 -2.04 16 15 H 0.09 3.84 7.94 -2.40 -0.02 3.82 16 16 C -0.14 -4.76 8.96 71.98 0.64 -4.12 16 17 C 0.04 2.27 4.44 29.85 0.13 2.41 16 18 C -0.54 -29.95 8.53 25.60 0.22 -29.73 16 19 H 0.06 3.25 7.60 -2.91 -0.02 3.23 16 20 C 0.01 0.69 5.46 84.65 0.46 1.15 16 21 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 22 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 N -0.35 -13.32 3.95 -188.23 -0.74 -14.07 16 27 N -0.34 -12.39 12.62 -51.32 -0.65 -13.04 16 28 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.08 2.50 5.63 -2.38 -0.01 2.48 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -73.29 354.45 4.43 -68.86 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.07 Total: 5.29 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 6.91 Total: -1.48 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.39 Total: -118.89 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.18 Total: -0.37 kcal Total: -73.29 4.43 -68.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188284569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.127 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds