Wall clock time and date at job start Tue Mar 31 2020 16:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47008 * 2 1 4 4 C 1.35745 * 116.99840 * 180.02562 * 3 2 1 5 5 N 1.32143 * 119.72769 * 359.97438 * 4 3 2 6 6 C 1.32002 * 121.72155 * 180.02562 * 5 4 3 7 7 C 1.38080 * 120.97669 * 0.02562 * 6 5 4 8 8 C 1.38737 * 119.34880 * 359.95436 * 7 6 5 9 9 C 1.38980 * 118.42421 * 0.04627 * 8 7 6 10 10 N 1.40047 * 120.50714 * 180.25052 * 9 8 7 11 11 C 1.34772 * 120.00078 * 325.85190 * 10 9 8 12 12 O 1.21611 * 119.99865 * 4.25437 * 11 10 9 13 13 C 1.47506 * 120.00021 * 184.24861 * 11 10 9 14 14 C 1.39684 * 120.19842 * 0.02562 * 13 11 10 15 15 C 1.37823 * 119.91448 * 179.97438 * 14 13 11 16 16 C 1.38565 * 120.33255 * 0.02562 * 15 14 13 17 17 C 1.38033 * 120.40276 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.07063 * 359.74814 * 17 16 15 19 19 O 1.35519 * 120.16435 * 180.27179 * 18 17 16 20 20 C 1.34811 * 116.99986 * 5.60972 * 19 18 17 21 21 H 1.08006 * 120.00201 * 354.92172 * 20 19 18 22 22 C 1.38702 * 120.00559 * 174.92648 * 20 19 18 23 23 N 1.31511 * 120.00315 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99525 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46718 * 90.00193 * 24 22 20 26 26 H 1.48498 * 109.46959 * 210.00043 * 24 22 20 27 27 H 1.48496 * 109.47238 * 330.00301 * 24 22 20 28 28 H 1.09004 * 109.47455 * 59.99336 * 1 2 3 29 29 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47241 * 299.99841 * 1 2 3 31 31 H 1.09001 * 109.46812 * 240.00439 * 2 1 3 32 32 H 1.08998 * 109.47263 * 119.99996 * 2 1 3 33 33 H 1.08001 * 119.51472 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.32545 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.78756 * 180.02562 * 8 7 6 36 36 H 0.96999 * 119.99645 * 145.86204 * 10 9 8 37 37 H 1.07998 * 120.03897 * 359.97438 * 14 13 11 38 38 H 1.08001 * 119.83231 * 179.97438 * 15 14 13 39 39 H 1.08001 * 119.80586 * 179.97438 * 16 15 14 40 40 H 1.07996 * 119.96576 * 179.97438 * 17 16 15 41 41 H 0.97001 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 -0.0005 5 7 4.1520 0.4734 -0.0005 6 6 5.4659 0.6007 -0.0005 7 6 6.0591 1.8476 0.0000 8 6 5.2592 2.9811 -0.0005 9 6 3.8791 2.8169 -0.0004 10 7 3.0306 3.9311 -0.0061 11 6 3.3904 5.0555 0.6439 12 8 4.4844 5.1302 1.1698 13 6 2.4574 6.1956 0.7173 14 6 1.1997 6.1142 0.1150 15 6 0.3324 7.1828 0.1877 16 6 0.7015 8.3395 0.8553 17 6 1.9410 8.4345 1.4553 18 6 2.8256 7.3661 1.3973 19 8 4.0409 7.4553 1.9904 20 6 4.2863 8.5624 2.7194 21 1 3.5636 9.3646 2.7432 22 6 5.4672 8.6715 3.4388 23 7 5.7068 9.7517 4.1495 24 14 6.7171 7.2838 3.3981 25 1 7.6684 7.5072 2.2799 26 1 7.4618 7.2506 4.6824 27 1 6.0147 5.9906 3.1995 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 6.0861 -0.2835 -0.0009 34 1 7.1352 1.9395 0.0004 35 1 5.6985 3.9677 -0.0005 36 1 2.1839 3.8934 -0.4779 37 1 0.9074 5.2150 -0.4068 38 1 -0.6396 7.1185 -0.2788 39 1 0.0153 9.1719 0.9067 40 1 2.2215 9.3396 1.9734 41 1 6.5325 9.8278 4.6529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194190850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:24 Heat of formation + Delta-G solvation = -26.480689 kcal Electronic energy + Delta-G solvation = -27414.982048 eV Core-core repulsion = 23454.740372 eV Total energy + Delta-G solvation = -3960.241676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.64 seconds Orbital eigenvalues (eV) -40.97639 -39.76939 -38.52405 -37.85397 -36.61181 -34.72744 -32.51784 -32.20689 -31.74321 -30.63571 -29.28475 -28.94146 -25.42500 -24.61082 -23.84883 -22.66996 -22.36568 -21.29866 -20.18934 -18.70973 -18.24076 -17.96958 -17.05447 -16.69370 -16.46377 -16.07370 -15.17344 -14.88755 -14.71816 -14.50326 -14.21906 -14.07376 -13.93612 -13.80006 -13.51073 -13.34570 -12.96764 -12.74827 -12.47533 -12.43121 -12.35972 -12.21151 -11.67236 -11.49948 -11.33277 -10.93163 -10.89878 -10.79697 -10.65352 -10.09231 -9.97514 -9.64826 -9.33809 -9.01425 -8.94071 -8.49119 -7.89303 -7.54172 -6.52839 -4.18108 1.05872 1.31117 1.53293 2.12840 2.89362 3.22546 3.28264 3.31781 3.38028 3.61428 3.83642 4.29844 4.33058 4.43223 4.64694 4.82289 4.82947 4.92910 4.98874 5.03658 5.10140 5.19038 5.30724 5.31340 5.44123 5.56605 5.59315 5.63975 5.81085 5.86218 5.96605 5.99787 6.16179 6.30012 6.37870 6.47795 6.71921 6.75569 6.93471 7.08370 7.23011 7.41191 7.58229 7.71815 7.79924 7.88566 8.61518 8.81990 9.43706 10.52025 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.004303 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.687452 B = 6505.749373 C = 8502.541884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.069 3.931 3 O -0.309 6.309 4 C 0.293 3.707 5 N -0.525 5.525 6 C 0.107 3.893 7 C -0.186 4.186 8 C -0.054 4.054 9 C 0.101 3.899 10 N -0.669 5.669 11 C 0.562 3.438 12 O -0.503 6.503 13 C -0.229 4.229 14 C -0.038 4.038 15 C -0.219 4.219 16 C -0.048 4.048 17 C -0.226 4.226 18 C 0.204 3.796 19 O -0.164 6.164 20 C -0.397 4.397 21 H 0.109 0.891 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.897 3.103 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.235 1.235 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.160 0.840 36 H 0.410 0.590 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 -16.111 -10.155 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.006 4.006 3 O -0.217 6.217 4 C 0.110 3.890 5 N -0.248 5.248 6 C -0.048 4.048 7 C -0.207 4.207 8 C -0.081 4.081 9 C 0.003 3.997 10 N -0.316 5.316 11 C 0.354 3.646 12 O -0.378 6.378 13 C -0.234 4.234 14 C -0.057 4.057 15 C -0.238 4.238 16 C -0.066 4.066 17 C -0.245 4.245 18 C 0.145 3.855 19 O -0.064 6.064 20 C -0.471 4.471 21 H 0.126 0.874 22 C -0.133 4.133 23 N -0.502 5.502 24 Si 0.721 3.279 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.158 1.158 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.247 0.753 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.930 -16.646 -9.555 20.406 hybrid contribution 0.485 0.294 -0.074 0.572 sum -6.445 -16.352 -9.630 20.041 Atomic orbital electron populations 1.21824 0.93108 1.02754 1.03417 1.22549 0.94576 0.81150 1.02316 1.86194 1.16585 1.30564 1.88307 1.19557 0.84327 0.88558 0.96515 1.67266 1.06732 1.31770 1.19061 1.22264 0.88970 0.97373 0.96228 1.21949 1.01502 0.92603 1.04639 1.21782 0.90749 1.01314 0.94302 1.17743 0.90931 0.84834 1.06224 1.43332 1.22601 1.11608 1.54081 1.18372 0.87233 0.81665 0.77344 1.90840 1.21651 1.80733 1.44539 1.18654 0.96865 0.94100 1.13782 1.20787 0.91693 0.97609 0.95565 1.20545 1.00437 0.95019 1.07826 1.20996 0.95069 0.96798 0.93768 1.21291 0.95305 1.00499 1.07362 1.18976 0.84875 0.91503 0.90100 1.83757 1.26511 1.41201 1.54954 1.20937 1.06669 0.94197 1.25343 0.87356 1.24502 0.97407 0.97576 0.93846 1.69630 1.26301 1.26712 1.27588 0.86243 0.80449 0.84014 0.77158 1.19852 1.21181 1.15809 0.91660 0.90441 0.91537 0.91813 0.91764 0.82493 0.84329 0.82265 0.75286 0.86719 0.86825 0.86684 0.84296 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.07 0.71 6.03 37.16 0.22 0.93 16 3 O -0.31 -4.10 9.68 -18.94 -0.18 -4.28 16 4 C 0.29 4.32 7.51 -16.94 -0.13 4.19 16 5 N -0.52 -7.19 9.21 -13.17 -0.12 -7.32 16 6 C 0.11 1.27 11.17 -17.54 -0.20 1.07 16 7 C -0.19 -2.35 10.10 -39.46 -0.40 -2.75 16 8 C -0.05 -0.85 8.82 -39.12 -0.34 -1.20 16 9 C 0.10 1.61 6.35 -83.35 -0.53 1.09 16 10 N -0.67 -10.77 5.15 -10.59 -0.05 -10.82 16 11 C 0.56 11.27 7.62 -12.49 -0.10 11.18 16 12 O -0.50 -11.94 12.45 -16.59 -0.21 -12.15 16 13 C -0.23 -4.56 5.89 -104.81 -0.62 -5.18 16 14 C -0.04 -0.59 9.53 -39.19 -0.37 -0.97 16 15 C -0.22 -3.31 10.02 -39.61 -0.40 -3.70 16 16 C -0.05 -0.79 10.03 -39.54 -0.40 -1.19 16 17 C -0.23 -4.63 9.16 -39.44 -0.36 -4.99 16 18 C 0.20 4.68 6.66 -38.59 -0.26 4.43 16 19 O -0.16 -4.40 6.67 -21.05 -0.14 -4.54 16 20 C -0.40 -11.11 9.95 30.90 0.31 -10.80 16 21 H 0.11 3.02 5.44 -52.48 -0.29 2.74 16 22 C 0.07 2.05 5.49 -17.52 -0.10 1.96 16 23 N -0.87 -24.84 13.96 55.48 0.77 -24.06 16 24 Si 0.90 22.60 28.62 -169.99 -4.86 17.73 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.24 -6.25 6.95 56.52 0.39 -5.86 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 32 H 0.06 0.68 8.11 -51.93 -0.42 0.25 16 33 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.16 2.81 6.25 -52.49 -0.33 2.48 16 36 H 0.41 5.44 6.61 -40.82 -0.27 5.17 16 37 H 0.11 1.39 6.41 -52.49 -0.34 1.05 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 41 H 0.28 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -32.57 353.06 -7.21 -39.79 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.46 Total: 7.06 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.28 Total: -6.73 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.60 Total: -42.20 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.53 Total: -20.97 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.86 Total: 17.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.57 -7.21 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194190850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.306 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.64 seconds